RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 EEF1A2Q05639 463 aaKnown RBP12.75□□□□□ -0.37
CCDC88C-201ENST00000331194 SIGLEC14Q08ET2 396 aa12.75□□□□□ -0.37
CCDC88C-201ENST00000331194 KLHL12Q53G59 568 aa12.75□□□□□ -0.37
CCDC88C-201ENST00000331194 C12orf73Q69YU5 71 aa12.75□□□□□ -0.37
CCDC88C-201ENST00000331194 NEIL3Q8TAT5 605 aa12.75□□□□□ -0.37
CCDC88C-201ENST00000331194 MRPS31Q92665 395 aaKnown RBP12.75□□□□□ -0.37
CCDC88C-201ENST00000331194 WBP2Q969T9 261 aa12.75□□□□□ -0.37
CCDC88C-201ENST00000331194 MED8Q96G25 268 aa12.75□□□□□ -0.37
CCDC88C-201ENST00000331194 HIST1H2AHQ96KK5 128 aa12.75□□□□□ -0.37
CCDC88C-201ENST00000331194 SUSD3Q96L08 255 aa12.75□□□□□ -0.37
CCDC88C-201ENST00000331194 GPA33Q99795 319 aa12.75□□□□□ -0.37
CCDC88C-201ENST00000331194 HIST1H2AJQ99878 128 aa12.75□□□□□ -0.37
CCDC88C-201ENST00000331194 THAP7Q9BT49 309 aaPredicted RBP12.75□□□□□ -0.37
CCDC88C-201ENST00000331194 H2AFJQ9BTM1 129 aa12.75□□□□□ -0.37
CCDC88C-201ENST00000331194 SORBS1Q9BX66 1292 aaKnown RBP12.75□□□□□ -0.37
CCDC88C-201ENST00000331194 POLMQ9NP87 494 aaPredicted RBP12.75□□□□□ -0.37
CCDC88C-201ENST00000331194 SLC35C2Q9NQQ7 365 aa12.75□□□□□ -0.37
CCDC88C-201ENST00000331194 ZNF624Q9P2J8 865 aaPredicted RBP12.75□□□□□ -0.37
CCDC88C-201ENST00000331194 UBQLN2Q9UHD9 624 aa12.75□□□□□ -0.37
CCDC88C-201ENST00000331194 BTNL2Q9UIR0 455 aa12.75□□□□□ -0.37
CCDC88C-201ENST00000331194 RUVBL1Q9Y265 456 aaKnown RBP12.75□□□□□ -0.37
CCDC88C-201ENST00000331194 GSTK1Q9Y2Q3 226 aa12.75□□□□□ -0.37
CCDC88C-201ENST00000331194 PRRC2BQ5JSZ5 2229 aaKnown RBP12.74□□□□□ -0.37
CCDC88C-201ENST00000331194 GLYATL1P3A0A0U1RQE8 302 aa12.74□□□□□ -0.37
CCDC88C-201ENST00000331194 KLKB1P03952 638 aa12.74□□□□□ -0.37
CCDC88C-201ENST00000331194 ACSM4P0C7M7 580 aa12.74□□□□□ -0.37
CCDC88C-201ENST00000331194 HSD3B1P14060 373 aa12.74□□□□□ -0.37
CCDC88C-201ENST00000331194 JUPP14923 745 aa12.74□□□□□ -0.37
CCDC88C-201ENST00000331194 GJA1P17302 382 aa12.74□□□□□ -0.37
CCDC88C-201ENST00000331194 ELAVL4P26378 380 aaKnown RBP12.74□□□□□ -0.37
CCDC88C-201ENST00000331194 SLC6A12P48065 614 aa12.74□□□□□ -0.37
CCDC88C-201ENST00000331194 CCR6P51684 374 aa12.74□□□□□ -0.37
CCDC88C-201ENST00000331194 WDR5P61964 334 aaKnown RBP12.74□□□□□ -0.37
CCDC88C-201ENST00000331194 B4GALNT1Q00973 533 aa12.74□□□□□ -0.37
CCDC88C-201ENST00000331194 PIN1Q13526 163 aaPredicted RBP12.74□□□□□ -0.37
CCDC88C-201ENST00000331194 GINS1Q14691 196 aa12.74□□□□□ -0.37
CCDC88C-201ENST00000331194 LRRC73Q5JTD7 316 aa12.74□□□□□ -0.37
CCDC88C-201ENST00000331194 CLLU1Q5K131 121 aa12.74□□□□□ -0.37
CCDC88C-201ENST00000331194 RTL4Q6ZR62 310 aa12.74□□□□□ -0.37
CCDC88C-201ENST00000331194 LRRC70Q7Z2Q7 622 aa12.74□□□□□ -0.37
CCDC88C-201ENST00000331194 SLAIN1Q8ND83 568 aa12.74□□□□□ -0.37
CCDC88C-201ENST00000331194 PPA2Q9H2U2 334 aa12.74□□□□□ -0.37
CCDC88C-201ENST00000331194 CLEC4MQ9H2X3 399 aaPredicted RBP12.74□□□□□ -0.37
CCDC88C-201ENST00000331194 RANBP3Q9H6Z4 567 aaPredicted RBP12.74□□□□□ -0.37
CCDC88C-201ENST00000331194 TESQ9UGI8 421 aaKnown RBP12.74□□□□□ -0.37
CCDC88C-201ENST00000331194 DIMT1Q9UNQ2 313 aaKnown RBP12.74□□□□□ -0.37
CCDC88C-201ENST00000331194 LINC01387J3KSC0 135 aa12.74□□□□□ -0.37
CCDC88C-201ENST00000331194 NTN1O95631 604 aa12.74□□□□□ -0.37
CCDC88C-201ENST00000331194 NR2F6P10588 404 aa12.74□□□□□ -0.37
CCDC88C-201ENST00000331194 FOSL1P15407 271 aa12.74□□□□□ -0.37
CCDC88C-201ENST00000331194 RHOAP61586 193 aa12.74□□□□□ -0.37
CCDC88C-201ENST00000331194 CAMK2DQ13557 499 aa12.74□□□□□ -0.37
CCDC88C-201ENST00000331194 NTRK2Q16620 822 aa12.74□□□□□ -0.37
CCDC88C-201ENST00000331194 GGTA1PQ4G0N0 100 aa12.74□□□□□ -0.37
CCDC88C-201ENST00000331194 TMEM201Q5SNT2 666 aa12.74□□□□□ -0.37
CCDC88C-201ENST00000331194 DCST1Q5T197 706 aa12.74□□□□□ -0.37
CCDC88C-201ENST00000331194 TCTN3Q6NUS6 607 aa12.74□□□□□ -0.37
CCDC88C-201ENST00000331194 TNFAIP8L2Q6P589 184 aaPredicted RBP12.74□□□□□ -0.37
CCDC88C-201ENST00000331194 GPALPP1Q8IXQ4 340 aa12.74□□□□□ -0.37
CCDC88C-201ENST00000331194 ADGRF3Q8IZF5 1079 aa12.74□□□□□ -0.37
CCDC88C-201ENST00000331194 PIAS4Q8N2W9 510 aaPredicted RBP12.74□□□□□ -0.37
CCDC88C-201ENST00000331194 GPR26Q8NDV2 337 aa12.74□□□□□ -0.37
CCDC88C-201ENST00000331194 TRPV1Q8NER1 839 aa12.74□□□□□ -0.37
CCDC88C-201ENST00000331194 WDR20Q8TBZ3 569 aa12.74□□□□□ -0.37
CCDC88C-201ENST00000331194 SLC7A13Q8TCU3 470 aa12.74□□□□□ -0.37
CCDC88C-201ENST00000331194 RAB8BQ92930 207 aa12.74□□□□□ -0.37
CCDC88C-201ENST00000331194 ASIC4Q96FT7 647 aa12.74□□□□□ -0.37
CCDC88C-201ENST00000331194 OR51J1Q9H342 316 aa12.74□□□□□ -0.37
CCDC88C-201ENST00000331194 FOLH1BQ9HBA9 442 aa12.74□□□□□ -0.37
CCDC88C-201ENST00000331194 SGK2Q9HBY8 427 aa12.74□□□□□ -0.37
CCDC88C-201ENST00000331194 IMP3Q9NV31 184 aaKnown RBP12.74□□□□□ -0.37
CCDC88C-201ENST00000331194 A0A1W2PPL8 197 aa12.73□□□□□ -0.37
CCDC88C-201ENST00000331194 SGK494L7N484 410 aa12.73□□□□□ -0.37
CCDC88C-201ENST00000331194 PROS1P07225 676 aa12.73□□□□□ -0.37
CCDC88C-201ENST00000331194 ANXA3P12429 323 aa12.73□□□□□ -0.37
CCDC88C-201ENST00000331194 ZNF8P17098 575 aaPredicted RBP12.73□□□□□ -0.37
CCDC88C-201ENST00000331194 HK1P19367 917 aa12.73□□□□□ -0.37
CCDC88C-201ENST00000331194 POU3F2P20265 443 aaPredicted RBP12.73□□□□□ -0.37
CCDC88C-201ENST00000331194 HNF1BP35680 557 aa12.73□□□□□ -0.37
CCDC88C-201ENST00000331194 FLT3LGP49771 235 aa12.73□□□□□ -0.37
CCDC88C-201ENST00000331194 GAS1P54826 345 aa12.73□□□□□ -0.37
CCDC88C-201ENST00000331194 CCSMST1Q4G0I0 132 aa12.73□□□□□ -0.37
CCDC88C-201ENST00000331194 PGBD2Q6P3X8 592 aa12.73□□□□□ -0.37
CCDC88C-201ENST00000331194 GPR135Q8IZ08 494 aa12.73□□□□□ -0.37
CCDC88C-201ENST00000331194 GPR32P1Q8NGA4 272 aa12.73□□□□□ -0.37
CCDC88C-201ENST00000331194 OR52H1Q8NGJ2 320 aa12.73□□□□□ -0.37
CCDC88C-201ENST00000331194 OR6M1Q8NGM8 313 aa12.73□□□□□ -0.37
CCDC88C-201ENST00000331194 OR10Z1Q8NGY1 313 aa12.73□□□□□ -0.37
CCDC88C-201ENST00000331194 UFD1Q92890 307 aa12.73□□□□□ -0.37
CCDC88C-201ENST00000331194 RNFT2Q96EX2 444 aa12.73□□□□□ -0.37
CCDC88C-201ENST00000331194 ART5Q96L15 291 aa12.73□□□□□ -0.37
CCDC88C-201ENST00000331194 FCRL1Q96LA6 429 aa12.73□□□□□ -0.37
CCDC88C-201ENST00000331194 USB1Q9BQ65 265 aaKnown RBP12.73□□□□□ -0.37
CCDC88C-201ENST00000331194 ENAMQ9NRM1 1142 aa12.73□□□□□ -0.37
CCDC88C-201ENST00000331194 NLGN3Q9NZ94 848 aa12.73□□□□□ -0.37
CCDC88C-201ENST00000331194 ZNF282Q9UDV7 671 aaPredicted RBP12.73□□□□□ -0.37
CCDC88C-201ENST00000331194 TP53BP1Q12888 1972 aaPredicted RBP12.73□□□□□ -0.37
CCDC88C-201ENST00000331194 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP12.73□□□□□ -0.37
CCDC88C-201ENST00000331194 TEX13CA0A0J9YWL9 993 aa12.73□□□□□ -0.37
CCDC88C-201ENST00000331194 KELP23276 732 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms