RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 NDUFA2O43678 99 aa12.78□□□□□ -0.36
SKA3-201ENST00000298260 SSNA1O43805 119 aa12.78□□□□□ -0.36
SKA3-201ENST00000298260 MPZL2O60487 215 aa12.78□□□□□ -0.36
SKA3-201ENST00000298260 ACSL4O60488 711 aa12.78□□□□□ -0.36
SKA3-201ENST00000298260 MTX2O75431 263 aa12.78□□□□□ -0.36
SKA3-201ENST00000298260 SOD1P00441 154 aa12.78□□□□□ -0.36
SKA3-201ENST00000298260 RHCEP18577 417 aa12.78□□□□□ -0.36
SKA3-201ENST00000298260 RAE1P78406 368 aaKnown RBP12.78□□□□□ -0.36
SKA3-201ENST00000298260 SIM1P81133 766 aaPredicted RBP12.78□□□□□ -0.36
SKA3-201ENST00000298260 TLE2Q04725 743 aa12.78□□□□□ -0.36
SKA3-201ENST00000298260 MAP4K2Q12851 820 aa12.78□□□□□ -0.36
SKA3-201ENST00000298260 BOP1Q14137 746 aaKnown RBP12.78□□□□□ -0.36
SKA3-201ENST00000298260 CHRNA6Q15825 494 aa12.78□□□□□ -0.36
SKA3-201ENST00000298260 PRSS53Q2L4Q9 553 aa12.78□□□□□ -0.36
SKA3-201ENST00000298260 GCNT6Q5T4J0 391 aa12.78□□□□□ -0.36
SKA3-201ENST00000298260 CXorf57Q6NSI4 855 aaKnown RBP12.78□□□□□ -0.36
SKA3-201ENST00000298260 LYPD4Q6UWN0 246 aa12.78□□□□□ -0.36
SKA3-201ENST00000298260 ALKAL2Q6UX46 152 aa12.78□□□□□ -0.36
SKA3-201ENST00000298260 RASSF6Q6ZTQ3 369 aa12.78□□□□□ -0.36
SKA3-201ENST00000298260 ZNF527Q8NB42 609 aa12.78□□□□□ -0.36
SKA3-201ENST00000298260 CSGALNACT1Q8TDX6 532 aa12.78□□□□□ -0.36
SKA3-201ENST00000298260 HMGB4Q8WW32 186 aa12.78□□□□□ -0.36
SKA3-201ENST00000298260 OTUB1Q96FW1 271 aaPredicted RBP12.78□□□□□ -0.36
SKA3-201ENST00000298260 SCMH1Q96GD3 660 aa12.78□□□□□ -0.36
SKA3-201ENST00000298260 FOPNLQ96NB1 174 aa12.78□□□□□ -0.36
SKA3-201ENST00000298260 ABHD1Q96SE0 405 aa12.78□□□□□ -0.36
SKA3-201ENST00000298260 DDOQ99489 341 aa12.78□□□□□ -0.36
SKA3-201ENST00000298260 USB1Q9BQ65 265 aaKnown RBP12.78□□□□□ -0.36
SKA3-201ENST00000298260 TRIM62Q9BVG3 475 aa12.78□□□□□ -0.36
SKA3-201ENST00000298260 KATNBL1Q9H079 304 aa12.78□□□□□ -0.36
SKA3-201ENST00000298260 VPS29Q9UBQ0 182 aa12.78□□□□□ -0.36
SKA3-201ENST00000298260 CRLS1Q9UJA2 301 aa12.78□□□□□ -0.36
SKA3-201ENST00000298260 FBXL2Q9UKC9 423 aa12.78□□□□□ -0.36
SKA3-201ENST00000298260 FLVCR2Q9UPI3 526 aa12.78□□□□□ -0.36
SKA3-201ENST00000298260 DSPPQ9NZW4 1301 aa12.77□□□□□ -0.36
SKA3-201ENST00000298260 DRGXA6NNA5 263 aa12.77□□□□□ -0.36
SKA3-201ENST00000298260 RAB36O95755 333 aa12.77□□□□□ -0.36
SKA3-201ENST00000298260 CH25HO95992 272 aa12.77□□□□□ -0.36
SKA3-201ENST00000298260 F11P03951 625 aa12.77□□□□□ -0.36
SKA3-201ENST00000298260 IFNW1P05000 195 aa12.77□□□□□ -0.36
SKA3-201ENST00000298260 HK1P19367 917 aa12.77□□□□□ -0.36
SKA3-201ENST00000298260 ITGALP20701 1170 aa12.77□□□□□ -0.36
SKA3-201ENST00000298260 IDSP22304 550 aa12.77□□□□□ -0.36
SKA3-201ENST00000298260 MAPKAPK2P49137 400 aa12.77□□□□□ -0.36
SKA3-201ENST00000298260 ATP12AP54707 1039 aa12.77□□□□□ -0.36
SKA3-201ENST00000298260 ZP1P60852 638 aa12.77□□□□□ -0.36
SKA3-201ENST00000298260 HSF2Q03933 536 aa12.77□□□□□ -0.36
SKA3-201ENST00000298260 CRHR2Q13324 411 aa12.77□□□□□ -0.36
SKA3-201ENST00000298260 NFATC2Q13469 925 aa12.77□□□□□ -0.36
SKA3-201ENST00000298260 PIN1Q13526 163 aaPredicted RBP12.77□□□□□ -0.36
SKA3-201ENST00000298260 PUS10Q3MIT2 529 aaKnown RBP12.77□□□□□ -0.36
SKA3-201ENST00000298260 ESPNLQ6ZVH7 1005 aa12.77□□□□□ -0.36
SKA3-201ENST00000298260 OR4F15Q8NGB8 312 aa12.77□□□□□ -0.36
SKA3-201ENST00000298260 OR4D11Q8NGI4 311 aa12.77□□□□□ -0.36
SKA3-201ENST00000298260 GEMIN6Q8WXD5 167 aaKnown RBP12.77□□□□□ -0.36
SKA3-201ENST00000298260 FATE1Q969F0 183 aa12.77□□□□□ -0.36
SKA3-201ENST00000298260 NXPE2Q96DL1 559 aa12.77□□□□□ -0.36
SKA3-201ENST00000298260 ZNF582Q96NG8 517 aaPredicted RBP12.77□□□□□ -0.36
SKA3-201ENST00000298260 PARK7Q99497 189 aaKnown RBP12.77□□□□□ -0.36
SKA3-201ENST00000298260 GPA33Q99795 319 aa12.77□□□□□ -0.36
SKA3-201ENST00000298260 ZCCHC4Q9H5U6 513 aa12.77□□□□□ -0.36
SKA3-201ENST00000298260 DLL4Q9NR61 685 aa12.77□□□□□ -0.36
SKA3-201ENST00000298260 ZFR2Q9UPR6 939 aaKnown RBP12.77□□□□□ -0.36
SKA3-201ENST00000298260 NOD1Q9Y239 953 aa12.77□□□□□ -0.36
SKA3-201ENST00000298260 PRRC2BQ5JSZ5 2229 aaKnown RBP12.77□□□□□ -0.37
SKA3-201ENST00000298260 E7EQ34 232 aa12.77□□□□□ -0.37
SKA3-201ENST00000298260 G3V3Q6 166 aa12.77□□□□□ -0.37
SKA3-201ENST00000298260 LPLP06858 475 aa12.77□□□□□ -0.37
SKA3-201ENST00000298260 CD9P21926 228 aa12.77□□□□□ -0.37
SKA3-201ENST00000298260 CCR7P32248 378 aa12.77□□□□□ -0.37
SKA3-201ENST00000298260 IRS1P35568 1242 aa12.77□□□□□ -0.37
SKA3-201ENST00000298260 YBEYP58557 167 aaPredicted RBP12.77□□□□□ -0.37
SKA3-201ENST00000298260 SNRPGP62308 76 aaKnown RBP12.77□□□□□ -0.37
SKA3-201ENST00000298260 IRF8Q02556 426 aa12.77□□□□□ -0.37
SKA3-201ENST00000298260 TAF10Q12962 218 aa12.77□□□□□ -0.37
SKA3-201ENST00000298260 ABRQ12979 859 aa12.77□□□□□ -0.37
SKA3-201ENST00000298260 ADAM15Q13444 863 aa12.77□□□□□ -0.37
SKA3-201ENST00000298260 XKR6Q5GH73 641 aa12.77□□□□□ -0.37
SKA3-201ENST00000298260 MEDAGQ5VYS4 303 aa12.77□□□□□ -0.37
SKA3-201ENST00000298260 TNFAIP8L2Q6P589 184 aaPredicted RBP12.77□□□□□ -0.37
SKA3-201ENST00000298260 SAMD12Q8N8I0 201 aa12.77□□□□□ -0.37
SKA3-201ENST00000298260 HERVK_113Q902F9 699 aa12.77□□□□□ -0.37
SKA3-201ENST00000298260 RAB8BQ92930 207 aa12.77□□□□□ -0.37
SKA3-201ENST00000298260 ZSWIM3Q96MP5 696 aa12.77□□□□□ -0.37
SKA3-201ENST00000298260 DMRTA2Q96SC8 542 aa12.77□□□□□ -0.37
SKA3-201ENST00000298260 PRR14Q9BWN1 585 aa12.77□□□□□ -0.37
SKA3-201ENST00000298260 NLNQ9BYT8 704 aa12.77□□□□□ -0.37
SKA3-201ENST00000298260 SHARPINQ9H0F6 387 aa12.77□□□□□ -0.37
SKA3-201ENST00000298260 FNIP2Q9P278 1114 aa12.77□□□□□ -0.37
SKA3-201ENST00000298260 GSTK1Q9Y2Q3 226 aa12.77□□□□□ -0.37
SKA3-201ENST00000298260 MAB21L2Q9Y586 359 aa12.77□□□□□ -0.37
SKA3-201ENST00000298260 PCDHGA9Q9Y5G4 932 aaKnown RBP12.77□□□□□ -0.37
SKA3-201ENST00000298260 CHD5Q8TDI0 1954 aa12.77□□□□□ -0.37
SKA3-201ENST00000298260 MGAT4DA6NG13 374 aa12.76□□□□□ -0.37
SKA3-201ENST00000298260 RRN3P2A6NIE6 340 aa12.76□□□□□ -0.37
SKA3-201ENST00000298260 SGK494L7N484 410 aa12.76□□□□□ -0.37
SKA3-201ENST00000298260 CBX7O95931 251 aa12.76□□□□□ -0.37
SKA3-201ENST00000298260 DHFRP00374 187 aa12.76□□□□□ -0.37
SKA3-201ENST00000298260 MT-ND4P03905 459 aa12.76□□□□□ -0.37
SKA3-201ENST00000298260 NR2F6P10588 404 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms