RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 PLK5Q496M5 336 aa11.73□□□□□ -0.53
NUP88-201ENST00000225696 RNLSQ5VYX0 342 aa11.73□□□□□ -0.53
NUP88-201ENST00000225696 C6orf120Q7Z4R8 191 aa11.73□□□□□ -0.53
NUP88-201ENST00000225696 LHFPL3Q86UP9 236 aa11.73□□□□□ -0.53
NUP88-201ENST00000225696 LAPTM4BQ86VI4 370 aa11.73□□□□□ -0.53
NUP88-201ENST00000225696 IQCHQ86VS3 1027 aa11.73□□□□□ -0.53
NUP88-201ENST00000225696 LRRC56Q8IYG6 542 aaPredicted RBP11.73□□□□□ -0.53
NUP88-201ENST00000225696 TMEM145Q8NBT3 493 aa11.73□□□□□ -0.53
NUP88-201ENST00000225696 HCAR2Q8TDS4 363 aa11.73□□□□□ -0.53
NUP88-201ENST00000225696 CYB5D2Q8WUJ1 264 aa11.73□□□□□ -0.53
NUP88-201ENST00000225696 DEDD2Q8WXF8 326 aa11.73□□□□□ -0.53
NUP88-201ENST00000225696 SLC9A6Q92581 669 aa11.73□□□□□ -0.53
NUP88-201ENST00000225696 GLYATL1Q969I3 302 aa11.73□□□□□ -0.53
NUP88-201ENST00000225696 NEURL3Q96EH8 262 aa11.73□□□□□ -0.53
NUP88-201ENST00000225696 TREX2Q9BQ50 279 aaPredicted RBP11.73□□□□□ -0.53
NUP88-201ENST00000225696 HDHD5Q9BXW7 423 aa11.73□□□□□ -0.53
NUP88-201ENST00000225696 ZNF717Q9BY31 904 aaPredicted RBP11.73□□□□□ -0.53
NUP88-201ENST00000225696 GALNT9Q9HCQ5 603 aa11.73□□□□□ -0.53
NUP88-201ENST00000225696 SIRT3Q9NTG7 399 aaPredicted RBP11.73□□□□□ -0.53
NUP88-201ENST00000225696 LSM7Q9UK45 103 aaKnown RBP11.73□□□□□ -0.53
NUP88-201ENST00000225696 A0A1W2PRU2 124 aa11.72□□□□□ -0.53
NUP88-201ENST00000225696 FAM25AB3EWG3 89 aa11.72□□□□□ -0.53
NUP88-201ENST00000225696 FAM25CB3EWG5 89 aa11.72□□□□□ -0.53
NUP88-201ENST00000225696 FAM25GB3EWG6 89 aa11.72□□□□□ -0.53
NUP88-201ENST00000225696 LIMS3P0CW19 117 aa11.72□□□□□ -0.53
NUP88-201ENST00000225696 LIMS4P0CW20 117 aa11.72□□□□□ -0.53
NUP88-201ENST00000225696 IFI30P13284 250 aa11.72□□□□□ -0.53
NUP88-201ENST00000225696 CPN2P22792 545 aa11.72□□□□□ -0.53
NUP88-201ENST00000225696 HLA-DMAP28067 261 aa11.72□□□□□ -0.53
NUP88-201ENST00000225696 EVI2BP34910 448 aa11.72□□□□□ -0.53
NUP88-201ENST00000225696 MAP2K3P46734 347 aa11.72□□□□□ -0.53
NUP88-201ENST00000225696 AVPR1BP47901 424 aa11.72□□□□□ -0.53
NUP88-201ENST00000225696 AGFG1P52594 562 aaKnown RBP11.72□□□□□ -0.53
NUP88-201ENST00000225696 EPHB3P54753 998 aa11.72□□□□□ -0.53
NUP88-201ENST00000225696 MANFP55145 182 aaKnown RBP11.72□□□□□ -0.53
NUP88-201ENST00000225696 WNT4P56705 351 aa11.72□□□□□ -0.53
NUP88-201ENST00000225696 CNTN1Q12860 1018 aa11.72□□□□□ -0.53
NUP88-201ENST00000225696 ZNF658BQ4V348 819 aaPredicted RBP11.72□□□□□ -0.53
NUP88-201ENST00000225696 MPP7Q5T2T1 576 aa11.72□□□□□ -0.53
NUP88-201ENST00000225696 LCN1P1Q5VSP4 162 aa11.72□□□□□ -0.53
NUP88-201ENST00000225696 PLET1Q6UQ28 207 aa11.72□□□□□ -0.53
NUP88-201ENST00000225696 NXPE4Q6UWF7 544 aa11.72□□□□□ -0.53
NUP88-201ENST00000225696 HSDL2Q6YN16 418 aa11.72□□□□□ -0.53
NUP88-201ENST00000225696 DDX53Q86TM3 631 aaKnown RBP11.72□□□□□ -0.53
NUP88-201ENST00000225696 TCTE3Q8IZS6 198 aa11.72□□□□□ -0.53
NUP88-201ENST00000225696 TRAM1L1Q8N609 369 aa11.72□□□□□ -0.53
NUP88-201ENST00000225696 OR4K5Q8NGD3 323 aa11.72□□□□□ -0.53
NUP88-201ENST00000225696 SLC5A11Q8WWX8 675 aa11.72□□□□□ -0.53
NUP88-201ENST00000225696 CLIP3Q96DZ5 547 aa11.72□□□□□ -0.53
NUP88-201ENST00000225696 WDR34Q96EX3 536 aa11.72□□□□□ -0.53
NUP88-201ENST00000225696 ZNF354BQ96LW1 612 aa11.72□□□□□ -0.53
NUP88-201ENST00000225696 F2RL3Q96RI0 385 aa11.72□□□□□ -0.53
NUP88-201ENST00000225696 SOSTQ9BQB4 213 aa11.72□□□□□ -0.53
NUP88-201ENST00000225696 FAM83CQ9BQN1 747 aa11.72□□□□□ -0.53
NUP88-201ENST00000225696 SGPP1Q9BX95 441 aa11.72□□□□□ -0.53
NUP88-201ENST00000225696 POLDIP3Q9BY77 421 aaKnown RBP11.72□□□□□ -0.53
NUP88-201ENST00000225696 MRPL9Q9BYD2 267 aaKnown RBP11.72□□□□□ -0.53
NUP88-201ENST00000225696 ANKRA2Q9H9E1 313 aa11.72□□□□□ -0.53
NUP88-201ENST00000225696 A4GALTQ9NPC4 353 aa11.72□□□□□ -0.53
NUP88-201ENST00000225696 MRPL17Q9NRX2 175 aaKnown RBP11.72□□□□□ -0.53
NUP88-201ENST00000225696 MCUBQ9NWR8 336 aa11.72□□□□□ -0.53
NUP88-201ENST00000225696 ACAD8Q9UKU7 415 aa11.72□□□□□ -0.53
NUP88-201ENST00000225696 PLXNA2O75051 1894 aa11.72□□□□□ -0.53
NUP88-201ENST00000225696 NEDD8-MDP1E9PL57 170 aa11.72□□□□□ -0.53
NUP88-201ENST00000225696 LEFTY2O00292 366 aa11.72□□□□□ -0.53
NUP88-201ENST00000225696 LRRC32Q14392 662 aa11.72□□□□□ -0.53
NUP88-201ENST00000225696 SNAPC1Q16533 368 aa11.72□□□□□ -0.53
NUP88-201ENST00000225696 BTBD16Q32M84 506 aa11.72□□□□□ -0.53
NUP88-201ENST00000225696 TPGS2Q68CL5 300 aa11.72□□□□□ -0.53
NUP88-201ENST00000225696 QSOX2Q6ZRP7 698 aa11.72□□□□□ -0.53
NUP88-201ENST00000225696 SLC9B2Q86UD5 537 aa11.72□□□□□ -0.53
NUP88-201ENST00000225696 CPXM2Q8N436 756 aa11.72□□□□□ -0.53
NUP88-201ENST00000225696 AMER3Q8N944 861 aa11.72□□□□□ -0.53
NUP88-201ENST00000225696 OR8D4Q8NGM9 314 aa11.72□□□□□ -0.53
NUP88-201ENST00000225696 OR6T1Q8NGN1 323 aa11.72□□□□□ -0.53
NUP88-201ENST00000225696 OR5H6Q8NGV6 325 aa11.72□□□□□ -0.53
NUP88-201ENST00000225696 GRPEL2Q8TAA5 225 aa11.72□□□□□ -0.53
NUP88-201ENST00000225696 EXOSC8Q96B26 276 aaKnown RBP11.72□□□□□ -0.53
NUP88-201ENST00000225696 RNFT2Q96EX2 444 aa11.72□□□□□ -0.53
NUP88-201ENST00000225696 EFCAB11Q9BUY7 163 aa11.72□□□□□ -0.53
NUP88-201ENST00000225696 TMEM245Q9H330 911 aa11.72□□□□□ -0.53
NUP88-201ENST00000225696 SEC14L3Q9UDX4 400 aa11.72□□□□□ -0.53
NUP88-201ENST00000225696 DYRK1BQ9Y463 629 aa11.72□□□□□ -0.53
NUP88-201ENST00000225696 PCYT1BQ9Y5K3 369 aaPredicted RBP11.72□□□□□ -0.53
NUP88-201ENST00000225696 CHD7Q9P2D1 2997 aa11.72□□□□□ -0.53
NUP88-201ENST00000225696 C2orf92A0A1B0GVN3 265 aa11.71□□□□□ -0.53
NUP88-201ENST00000225696 PPM1DO15297 605 aa11.71□□□□□ -0.53
NUP88-201ENST00000225696 SLC28A2O43868 658 aa11.71□□□□□ -0.53
NUP88-201ENST00000225696 SH3BP5O60239 455 aa11.71□□□□□ -0.53
NUP88-201ENST00000225696 ICMTO60725 284 aa11.71□□□□□ -0.53
NUP88-201ENST00000225696 SRPRAP08240 638 aaKnown RBP11.71□□□□□ -0.53
NUP88-201ENST00000225696 DDX5P17844 614 aaKnown RBP11.71□□□□□ -0.53
NUP88-201ENST00000225696 SLC6A11P48066 632 aa11.71□□□□□ -0.53
NUP88-201ENST00000225696 POLR2LP62875 67 aaKnown RBP11.71□□□□□ -0.53
NUP88-201ENST00000225696 MLLT1Q03111 559 aaPredicted RBP11.71□□□□□ -0.53
NUP88-201ENST00000225696 TYW3Q6IPR3 259 aaKnown RBP11.71□□□□□ -0.53
NUP88-201ENST00000225696 SZRD1Q7Z422 152 aa11.71□□□□□ -0.53
NUP88-201ENST00000225696 METTL3Q86U44 580 aaKnown RBP11.71□□□□□ -0.53
NUP88-201ENST00000225696 SLC30A8Q8IWU4 369 aa11.71□□□□□ -0.53
NUP88-201ENST00000225696 SLC43A3Q8NBI5 491 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms