RNA–Protein interactions for RNA: ENST00000224237.9

VIM-201, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIM, Length 1,868 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-201ENST00000224237 HCN3Q9P1Z3 774 aa17.03■□□□□ 0.32
VIM-201ENST00000224237 ABCG2Q9UNQ0 655 aa17.03■□□□□ 0.32
VIM-201ENST00000224237 U3KQA8 63 aa17.03■□□□□ 0.32
VIM-201ENST00000224237 CPED1A4D0V7 1026 aa17.02■□□□□ 0.32
VIM-201ENST00000224237 TMEM150CB9EJG8 249 aa17.02■□□□□ 0.32
VIM-201ENST00000224237 G3V2T6 193 aa17.02■□□□□ 0.32
VIM-201ENST00000224237 OR2B3O76000 313 aa17.02■□□□□ 0.32
VIM-201ENST00000224237 SYPP08247 313 aa17.02■□□□□ 0.32
VIM-201ENST00000224237 IFI6P09912 130 aa17.02■□□□□ 0.32
VIM-201ENST00000224237 ID2Q02363 134 aa17.02■□□□□ 0.32
VIM-201ENST00000224237 FAM214AQ32MH5 1076 aa17.02■□□□□ 0.32
VIM-201ENST00000224237 IFI44LQ53G44 452 aa17.02■□□□□ 0.32
VIM-201ENST00000224237 ZNF628Q5EBL2 1059 aa17.02■□□□□ 0.32
VIM-201ENST00000224237 TMEM71Q6P5X7 295 aa17.02■□□□□ 0.32
VIM-201ENST00000224237 APLFQ8IW19 511 aaPredicted RBP17.02■□□□□ 0.32
VIM-201ENST00000224237 OR2L13Q8N349 312 aa17.02■□□□□ 0.32
VIM-201ENST00000224237 OR7G2Q8NG99 324 aa17.02■□□□□ 0.32
VIM-201ENST00000224237 NAT6Q93015 286 aa17.02■□□□□ 0.32
VIM-201ENST00000224237 MMABQ96EY8 250 aaPredicted RBP17.02■□□□□ 0.32
VIM-201ENST00000224237 MYCBPQ99417 103 aaPredicted RBP17.02■□□□□ 0.32
VIM-201ENST00000224237 NUDT22Q9BRQ3 303 aa17.02■□□□□ 0.32
VIM-201ENST00000224237 ZNF768Q9H5H4 540 aaKnown RBP17.02■□□□□ 0.32
VIM-201ENST00000224237 SCOCQ9UIL1 159 aa17.02■□□□□ 0.32
VIM-201ENST00000224237 GMEB2Q9UKD1 530 aa17.02■□□□□ 0.32
VIM-201ENST00000224237 RAB23Q9ULC3 237 aa17.02■□□□□ 0.32
VIM-201ENST00000224237 GIMAP1-GIMAP5A0A087WTJ2 511 aa17.01■□□□□ 0.31
VIM-201ENST00000224237 H3BMH7 237 aa17.01■□□□□ 0.31
VIM-201ENST00000224237 hCG_2039718K7EN88 272 aa17.01■□□□□ 0.31
VIM-201ENST00000224237 SLC28A2O43868 658 aa17.01■□□□□ 0.31
VIM-201ENST00000224237 E2F6O75461 281 aa17.01■□□□□ 0.31
VIM-201ENST00000224237 NR2F1P10589 423 aa17.01■□□□□ 0.31
VIM-201ENST00000224237 NELFEP18615 380 aaKnown RBP17.01■□□□□ 0.31
VIM-201ENST00000224237 CRISP3P54108 245 aa17.01■□□□□ 0.31
VIM-201ENST00000224237 MAPK11Q15759 364 aa17.01■□□□□ 0.31
VIM-201ENST00000224237 RPS26P11Q5JNZ5 115 aaPredicted RBP17.01■□□□□ 0.31
VIM-201ENST00000224237 OR2T5Q6IEZ7 315 aa17.01■□□□□ 0.31
VIM-201ENST00000224237 TMEM154Q6P9G4 183 aa17.01■□□□□ 0.31
VIM-201ENST00000224237 FAM111BQ6SJ93 734 aa17.01■□□□□ 0.31
VIM-201ENST00000224237 ARMC8Q8IUR7 673 aa17.01■□□□□ 0.31
VIM-201ENST00000224237 ZNF595Q8IYB9 648 aa17.01■□□□□ 0.31
VIM-201ENST00000224237 OR2T29Q8NH02 315 aa17.01■□□□□ 0.31
VIM-201ENST00000224237 SPPL2AQ8TCT8 520 aa17.01■□□□□ 0.31
VIM-201ENST00000224237 ANKRD9Q96BM1 317 aaPredicted RBP17.01■□□□□ 0.31
VIM-201ENST00000224237 GIMAP5Q96F15 307 aa17.01■□□□□ 0.31
VIM-201ENST00000224237 C7orf34Q96L11 122 aa17.01■□□□□ 0.31
VIM-201ENST00000224237 ZNF607Q96SK3 696 aa17.01■□□□□ 0.31
VIM-201ENST00000224237 ACTRT3Q9BYD9 372 aa17.01■□□□□ 0.31
VIM-201ENST00000224237 EQTNQ9NQ60 294 aa17.01■□□□□ 0.31
VIM-201ENST00000224237 SCN2AQ99250 2005 aa17.01■□□□□ 0.31
VIM-201ENST00000224237 A0A087WV62 115 aa17.01■□□□□ 0.31
VIM-201ENST00000224237 A8MU76 341 aa17.01■□□□□ 0.31
VIM-201ENST00000224237 DPM1O60762 260 aa17.01■□□□□ 0.31
VIM-201ENST00000224237 ARSFP54793 590 aa17.01■□□□□ 0.31
VIM-201ENST00000224237 ITGA1P56199 1179 aa17.01■□□□□ 0.31
VIM-201ENST00000224237 PERM1Q5SV97 790 aa17.01■□□□□ 0.31
VIM-201ENST00000224237 OTUD3Q5T2D3 398 aaPredicted RBP17.01■□□□□ 0.31
VIM-201ENST00000224237 C6orf52Q5T4I8 152 aa17.01■□□□□ 0.31
VIM-201ENST00000224237 TCEAL6Q6IPX3 200 aa17.01■□□□□ 0.31
VIM-201ENST00000224237 BMP8AQ7Z5Y6 402 aa17.01■□□□□ 0.31
VIM-201ENST00000224237 MARVELD2Q8N4S9 558 aa17.01■□□□□ 0.31
VIM-201ENST00000224237 EID2Q8N6I1 236 aa17.01■□□□□ 0.31
VIM-201ENST00000224237 OR5K1Q8NHB7 308 aa17.01■□□□□ 0.31
VIM-201ENST00000224237 ZNF675Q8TD23 568 aa17.01■□□□□ 0.31
VIM-201ENST00000224237 MAGEE2Q8TD90 523 aaPredicted RBP17.01■□□□□ 0.31
VIM-201ENST00000224237 RASSF5Q8WWW0 418 aa17.01■□□□□ 0.31
VIM-201ENST00000224237 GEMIN6Q8WXD5 167 aaKnown RBP17.01■□□□□ 0.31
VIM-201ENST00000224237 TCEAL3Q969E4 200 aa17.01■□□□□ 0.31
VIM-201ENST00000224237 MVB12AQ96EY5 273 aa17.01■□□□□ 0.31
VIM-201ENST00000224237 C16orf58Q96GQ5 468 aa17.01■□□□□ 0.31
VIM-201ENST00000224237 PEX11GQ96HA9 241 aa17.01■□□□□ 0.31
VIM-201ENST00000224237 TREX2Q9BQ50 279 aaPredicted RBP17.01■□□□□ 0.31
VIM-201ENST00000224237 YIPF4Q9BSR8 244 aa17.01■□□□□ 0.31
VIM-201ENST00000224237 GTPBP2Q9BX10 602 aaKnown RBP17.01■□□□□ 0.31
VIM-201ENST00000224237 CUTCQ9NTM9 273 aa17.01■□□□□ 0.31
VIM-201ENST00000224237 PRAMEF27A3QJZ7 478 aa17■□□□□ 0.31
VIM-201ENST00000224237 DUXAA6NLW8 204 aa17■□□□□ 0.31
VIM-201ENST00000224237 PCDHGA12O60330 932 aa17■□□□□ 0.31
VIM-201ENST00000224237 CPNE6O95741 557 aa17■□□□□ 0.31
VIM-201ENST00000224237 NT5EP21589 574 aa17■□□□□ 0.31
VIM-201ENST00000224237 ALDH3A2P51648 485 aa17■□□□□ 0.31
VIM-201ENST00000224237 MAPK10P53779 464 aa17■□□□□ 0.31
VIM-201ENST00000224237 SYPL1Q16563 259 aa17■□□□□ 0.31
VIM-201ENST00000224237 NHSL2Q5HYW2 709 aa17■□□□□ 0.31
VIM-201ENST00000224237 PRAMEF8Q5VWM4 474 aa17■□□□□ 0.31
VIM-201ENST00000224237 PRAMEF7Q5VXH5 474 aa17■□□□□ 0.31
VIM-201ENST00000224237 MFSD12Q6NUT3 480 aa17■□□□□ 0.31
VIM-201ENST00000224237 STK32CQ86UX6 486 aa17■□□□□ 0.31
VIM-201ENST00000224237 GPR135Q8IZ08 494 aa17■□□□□ 0.31
VIM-201ENST00000224237 BBS10Q8TAM1 723 aa17■□□□□ 0.31
VIM-201ENST00000224237 OR7D2Q96RA2 312 aa17■□□□□ 0.31
VIM-201ENST00000224237 ANKRA2Q9H9E1 313 aa17■□□□□ 0.31
VIM-201ENST00000224237 FANCEQ9HB96 536 aa17■□□□□ 0.31
VIM-201ENST00000224237 SMPD3Q9NY59 655 aaPredicted RBP17■□□□□ 0.31
VIM-201ENST00000224237 C19orf53Q9UNZ5 99 aaPredicted RBP17■□□□□ 0.31
VIM-201ENST00000224237 CLDN4O14493 209 aa16.99■□□□□ 0.31
VIM-201ENST00000224237 PLOD3O60568 738 aa16.99■□□□□ 0.31
VIM-201ENST00000224237 SERPINB7O75635 380 aa16.99■□□□□ 0.31
VIM-201ENST00000224237 MFN2O95140 757 aa16.99■□□□□ 0.31
VIM-201ENST00000224237 HPRP00739 348 aa16.99■□□□□ 0.31
VIM-201ENST00000224237 SLC35E2P0CK97 266 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms