RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 SNX7Q9UNH6 387 aa10.1□□□□□ -0.79
USP28-201ENST00000003302 LANCL1O43813 399 aa10.1□□□□□ -0.79
USP28-201ENST00000003302 RHOP08100 348 aa10.1□□□□□ -0.79
USP28-201ENST00000003302 ASMTP46597 345 aa10.1□□□□□ -0.79
USP28-201ENST00000003302 LTB4RQ15722 352 aa10.1□□□□□ -0.79
USP28-201ENST00000003302 REEP3Q6NUK4 255 aa10.1□□□□□ -0.79
USP28-201ENST00000003302 SLC30A6Q6NXT4 461 aa10.1□□□□□ -0.79
USP28-201ENST00000003302 ZNF556Q9HAH1 456 aa10.1□□□□□ -0.79
USP28-201ENST00000003302 TMA7Q9Y2S6 64 aaKnown RBP10.1□□□□□ -0.79
USP28-201ENST00000003302 KLK4Q9Y5K2 254 aa10.1□□□□□ -0.79
USP28-201ENST00000003302 SPIN1Q9Y657 262 aaPredicted RBP10.1□□□□□ -0.79
USP28-201ENST00000003302 A0A1W2PPV9 198 aa10.09□□□□□ -0.79
USP28-201ENST00000003302 MEIOCA2RUB1 952 aa10.09□□□□□ -0.79
USP28-201ENST00000003302 PDZK1P1A8MUH7 402 aa10.09□□□□□ -0.79
USP28-201ENST00000003302 SLC16A5O15375 505 aa10.09□□□□□ -0.79
USP28-201ENST00000003302 MAGEB4O15481 346 aaPredicted RBP10.09□□□□□ -0.79
USP28-201ENST00000003302 PTTG1O95997 202 aa10.09□□□□□ -0.79
USP28-201ENST00000003302 RHCEP18577 417 aa10.09□□□□□ -0.79
USP28-201ENST00000003302 GPC1P35052 558 aa10.09□□□□□ -0.79
USP28-201ENST00000003302 PNLIPRP1P54315 467 aa10.09□□□□□ -0.79
USP28-201ENST00000003302 LRRC32Q14392 662 aa10.09□□□□□ -0.79
USP28-201ENST00000003302 LASP1Q14847 261 aaKnown RBP10.09□□□□□ -0.79
USP28-201ENST00000003302 ZNF805Q5CZA5 627 aa10.09□□□□□ -0.79
USP28-201ENST00000003302 GHDCQ8N2G8 530 aa10.09□□□□□ -0.79
USP28-201ENST00000003302 ZNF557Q8N988 423 aaPredicted RBP10.09□□□□□ -0.79
USP28-201ENST00000003302 OR9A1PQ8NGU1 263 aa10.09□□□□□ -0.79
USP28-201ENST00000003302 ZSCAN5AQ9BUG6 496 aa10.09□□□□□ -0.79
USP28-201ENST00000003302 ZBP1Q9H171 429 aa10.09□□□□□ -0.79
USP28-201ENST00000003302 GLIPR2Q9H4G4 154 aa10.09□□□□□ -0.79
USP28-201ENST00000003302 MED20Q9H944 212 aa10.09□□□□□ -0.79
USP28-201ENST00000003302 COMMD3Q9UBI1 195 aa10.09□□□□□ -0.79
USP28-201ENST00000003302 FBXW2Q9UKT8 454 aa10.09□□□□□ -0.79
USP28-201ENST00000003302 SIRT4Q9Y6E7 314 aaPredicted RBP10.09□□□□□ -0.79
USP28-201ENST00000003302 CFAP47Q6ZTR5 3102 aa10.09□□□□□ -0.79
USP28-201ENST00000003302 MPDZO75970 2070 aa10.09□□□□□ -0.79
USP28-201ENST00000003302 ANKRD34BA5PLL1 514 aa10.09□□□□□ -0.79
USP28-201ENST00000003302 PIP5K1CO60331 668 aa10.09□□□□□ -0.79
USP28-201ENST00000003302 LATS1O95835 1130 aa10.09□□□□□ -0.79
USP28-201ENST00000003302 SYPP08247 313 aa10.09□□□□□ -0.79
USP28-201ENST00000003302 DDX5P17844 614 aaKnown RBP10.09□□□□□ -0.79
USP28-201ENST00000003302 DGKGP49619 791 aa10.09□□□□□ -0.79
USP28-201ENST00000003302 CDC42P60953 191 aa10.09□□□□□ -0.79
USP28-201ENST00000003302 ALDH6A1Q02252 535 aaKnown RBP10.09□□□□□ -0.79
USP28-201ENST00000003302 FCHO2Q0JRZ9 810 aa10.09□□□□□ -0.79
USP28-201ENST00000003302 LARS2Q15031 903 aaKnown RBP10.09□□□□□ -0.79
USP28-201ENST00000003302 ZNF791Q3KP31 576 aaPredicted RBP10.09□□□□□ -0.79
USP28-201ENST00000003302 ANXA8L1Q5VT79 327 aa10.09□□□□□ -0.79
USP28-201ENST00000003302 MMAAQ8IVH4 418 aaKnown RBP10.09□□□□□ -0.79
USP28-201ENST00000003302 OR4K5Q8NGD3 323 aa10.09□□□□□ -0.79
USP28-201ENST00000003302 DTD2Q96FN9 168 aa10.09□□□□□ -0.79
USP28-201ENST00000003302 RNF170Q96K19 258 aa10.09□□□□□ -0.79
USP28-201ENST00000003302 KATNB1Q9BVA0 655 aa10.09□□□□□ -0.79
USP28-201ENST00000003302 CCDC59Q9P031 241 aaKnown RBP10.09□□□□□ -0.79
USP28-201ENST00000003302 KLHL42Q9P2K6 505 aa10.09□□□□□ -0.79
USP28-201ENST00000003302 ERAL1O75616 437 aaKnown RBP10.09□□□□□ -0.79
USP28-201ENST00000003302 ATXN8OSP0DMR3 200 aa10.09□□□□□ -0.79
USP28-201ENST00000003302 HSD3B1P14060 373 aa10.09□□□□□ -0.79
USP28-201ENST00000003302 CEBPBP17676 345 aa10.09□□□□□ -0.79
USP28-201ENST00000003302 MAPK12P53778 367 aa10.09□□□□□ -0.79
USP28-201ENST00000003302 WDR5P61964 334 aaKnown RBP10.09□□□□□ -0.79
USP28-201ENST00000003302 GINS1Q14691 196 aa10.09□□□□□ -0.79
USP28-201ENST00000003302 GLYR1Q49A26 553 aaPredicted RBP10.09□□□□□ -0.79
USP28-201ENST00000003302 CCDC80Q76M96 950 aa10.09□□□□□ -0.79
USP28-201ENST00000003302 SYT9Q86SS6 491 aa10.09□□□□□ -0.79
USP28-201ENST00000003302 VRK2Q86Y07 508 aa10.09□□□□□ -0.79
USP28-201ENST00000003302 FAM46DQ8NEK8 389 aa10.09□□□□□ -0.79
USP28-201ENST00000003302 PCNPQ8WW12 178 aaKnown RBP10.09□□□□□ -0.79
USP28-201ENST00000003302 UCK2Q9BZX2 261 aa10.09□□□□□ -0.79
USP28-201ENST00000003302 OR52A5Q9H2C5 316 aa10.09□□□□□ -0.79
USP28-201ENST00000003302 OR51I1Q9H343 314 aa10.09□□□□□ -0.79
USP28-201ENST00000003302 ASAH2Q9NR71 780 aa10.09□□□□□ -0.79
USP28-201ENST00000003302 AP3M1Q9Y2T2 418 aa10.09□□□□□ -0.79
USP28-201ENST00000003302 INSL6Q9Y581 213 aa10.09□□□□□ -0.79
USP28-201ENST00000003302 NBEAQ8NFP9 2946 aa10.09□□□□□ -0.79
USP28-201ENST00000003302 MED26O95402 600 aa10.09□□□□□ -0.79
USP28-201ENST00000003302 OSMP13725 252 aa10.09□□□□□ -0.79
USP28-201ENST00000003302 RECQLP46063 649 aaPredicted RBP10.09□□□□□ -0.79
USP28-201ENST00000003302 ZNF45Q02386 682 aa10.09□□□□□ -0.79
USP28-201ENST00000003302 CAMK1Q14012 370 aa10.09□□□□□ -0.79
USP28-201ENST00000003302 MTFR2Q6P444 385 aa10.09□□□□□ -0.79
USP28-201ENST00000003302 USP30Q70CQ3 517 aa10.09□□□□□ -0.79
USP28-201ENST00000003302 PRICKLE2Q7Z3G6 844 aa10.09□□□□□ -0.79
USP28-201ENST00000003302 NKAIN4Q8IVV8 208 aa10.09□□□□□ -0.79
USP28-201ENST00000003302 TMEFF1Q8IYR6 380 aa10.09□□□□□ -0.79
USP28-201ENST00000003302 CCDC116Q8IYX3 515 aa10.09□□□□□ -0.79
USP28-201ENST00000003302 NANOGP1Q8N7R0 232 aa10.09□□□□□ -0.79
USP28-201ENST00000003302 COQ10AQ96MF6 247 aa10.09□□□□□ -0.79
USP28-201ENST00000003302 ISG20L2Q9H9L3 353 aaKnown RBP10.09□□□□□ -0.79
USP28-201ENST00000003302 MYNNQ9NPC7 610 aa10.09□□□□□ -0.79
USP28-201ENST00000003302 MBNL1Q9NR56 388 aaKnown RBP10.09□□□□□ -0.79
USP28-201ENST00000003302 SAGE1Q9NXZ1 904 aa10.09□□□□□ -0.79
USP28-201ENST00000003302 TRPC4Q9UBN4 977 aa10.09□□□□□ -0.79
USP28-201ENST00000003302 EML5Q05BV3 1969 aa10.08□□□□□ -0.8
USP28-201ENST00000003302 EFCAB10A6NFE3 127 aa10.08□□□□□ -0.8
USP28-201ENST00000003302 ERVH48-1M5A8F1 160 aa10.08□□□□□ -0.8
USP28-201ENST00000003302 SLC28A2O43868 658 aa10.08□□□□□ -0.8
USP28-201ENST00000003302 AGFG1P52594 562 aaKnown RBP10.08□□□□□ -0.8
USP28-201ENST00000003302 CTBP2P56545 445 aa10.08□□□□□ -0.8
USP28-201ENST00000003302 MLF2Q15773 248 aaPredicted RBP10.08□□□□□ -0.8
USP28-201ENST00000003302 PRAMEF14Q5SWL7 426 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 338.4 ms