RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 CHCHD2Q9Y6H1 151 aaPredicted RBP16.96■□□□□ 0.31
CLN3-241ENST00000635861 IKBKGQ9Y6K9 419 aa16.96■□□□□ 0.31
CLN3-241ENST00000635861 TP53I11O14683 189 aa16.96■□□□□ 0.3
CLN3-241ENST00000635861 CLDN9O95484 217 aa16.96■□□□□ 0.3
CLN3-241ENST00000635861 CELA3AP09093 270 aa16.96■□□□□ 0.3
CLN3-241ENST00000635861 FAM58BPP0C7Q3 252 aa16.96■□□□□ 0.3
CLN3-241ENST00000635861 CD1EP15812 388 aa16.96■□□□□ 0.3
CLN3-241ENST00000635861 PHBP35232 272 aa16.96■□□□□ 0.3
CLN3-241ENST00000635861 TMED10P49755 219 aaKnown RBP16.96■□□□□ 0.3
CLN3-241ENST00000635861 ZNF267Q14586 743 aaPredicted RBP16.96■□□□□ 0.3
CLN3-241ENST00000635861 OR52E8Q6IFG1 317 aa16.96■□□□□ 0.3
CLN3-241ENST00000635861 GOLGA7Q7Z5G4 137 aa16.96■□□□□ 0.3
CLN3-241ENST00000635861 RNF175Q8N4F7 328 aa16.96■□□□□ 0.3
CLN3-241ENST00000635861 FAM13CQ8NE31 585 aa16.96■□□□□ 0.3
CLN3-241ENST00000635861 GAL3ST4Q96RP7 486 aa16.96■□□□□ 0.3
CLN3-241ENST00000635861 SECISBP2Q96T21 854 aaKnown RBP16.96■□□□□ 0.3
CLN3-241ENST00000635861 SERPINI1Q99574 410 aa16.96■□□□□ 0.3
CLN3-241ENST00000635861 SEMA4BQ9NPR2 832 aaPredicted RBP16.96■□□□□ 0.3
CLN3-241ENST00000635861 MTORP42345 2549 aa16.95■□□□□ 0.3
CLN3-241ENST00000635861 A0A096LPK6 155 aa16.95■□□□□ 0.3
CLN3-241ENST00000635861 A0A0G2JNJ9 132 aa16.95■□□□□ 0.3
CLN3-241ENST00000635861 A0A1W2PR48 441 aa16.95■□□□□ 0.3
CLN3-241ENST00000635861 HRKO00198 91 aa16.95■□□□□ 0.3
CLN3-241ENST00000635861 CTAGE8P0CG41 777 aa16.95■□□□□ 0.3
CLN3-241ENST00000635861 TYK2P29597 1187 aa16.95■□□□□ 0.3
CLN3-241ENST00000635861 IRF9Q00978 393 aa16.95■□□□□ 0.3
CLN3-241ENST00000635861 CPSF6Q16630 551 aaKnown RBP eCLIP16.95■□□□□ 0.3
CLN3-241ENST00000635861 CTAGE4Q8IX94 777 aa16.95■□□□□ 0.3
CLN3-241ENST00000635861 NEIL3Q8TAT5 605 aa16.95■□□□□ 0.3
CLN3-241ENST00000635861 PROK2Q9HC23 129 aa16.95■□□□□ 0.3
CLN3-241ENST00000635861 Q9UFV3 132 aa16.95■□□□□ 0.3
CLN3-241ENST00000635861 CNOT11Q9UKZ1 510 aaKnown RBP16.95■□□□□ 0.3
CLN3-241ENST00000635861 C2orf92A0A1B0GVN3 265 aa16.94■□□□□ 0.3
CLN3-241ENST00000635861 HMX2A2RU54 273 aa16.94■□□□□ 0.3
CLN3-241ENST00000635861 TMPRSS11DO60235 418 aa16.94■□□□□ 0.3
CLN3-241ENST00000635861 EEDO75530 441 aaKnown RBP16.94■□□□□ 0.3
CLN3-241ENST00000635861 ENDOUP21128 410 aaKnown RBP16.94■□□□□ 0.3
CLN3-241ENST00000635861 RPP38P78345 283 aaKnown RBP16.94■□□□□ 0.3
CLN3-241ENST00000635861 RPS6KA2Q15349 733 aa16.94■□□□□ 0.3
CLN3-241ENST00000635861 TECRLQ5HYJ1 363 aa16.94■□□□□ 0.3
CLN3-241ENST00000635861 TEX35Q5T0J7 233 aa16.94■□□□□ 0.3
CLN3-241ENST00000635861 PRAMEF20Q5VT98 475 aa16.94■□□□□ 0.3
CLN3-241ENST00000635861 LIX1Q8N485 282 aa16.94■□□□□ 0.3
CLN3-241ENST00000635861 ZNF441Q8N8Z8 693 aa16.94■□□□□ 0.3
CLN3-241ENST00000635861 C17orf47Q8NEP4 570 aa16.94■□□□□ 0.3
CLN3-241ENST00000635861 OR10G3Q8NGC4 313 aa16.94■□□□□ 0.3
CLN3-241ENST00000635861 ZNF597Q96LX8 424 aa16.94■□□□□ 0.3
CLN3-241ENST00000635861 DOCK7Q96N67 2140 aa16.94■□□□□ 0.3
CLN3-241ENST00000635861 GPR78Q96P69 363 aa16.94■□□□□ 0.3
CLN3-241ENST00000635861 DOHHQ9BU89 302 aa16.94■□□□□ 0.3
CLN3-241ENST00000635861 NTMT1Q9BV86 223 aa16.94■□□□□ 0.3
CLN3-241ENST00000635861 AHSPQ9NZD4 102 aa16.94■□□□□ 0.3
CLN3-241ENST00000635861 SPRR3Q9UBC9 169 aa16.94■□□□□ 0.3
CLN3-241ENST00000635861 ADAM29Q9UKF5 820 aa16.94■□□□□ 0.3
CLN3-241ENST00000635861 LRRC3CA6NJW4 275 aa16.93■□□□□ 0.3
CLN3-241ENST00000635861 HSPB2A8KAH6 182 aa16.93■□□□□ 0.3
CLN3-241ENST00000635861 STX16-NPEPL1H3BU86 382 aa16.93■□□□□ 0.3
CLN3-241ENST00000635861 STX16O14662 325 aa16.93■□□□□ 0.3
CLN3-241ENST00000635861 CDH16O75309 829 aa16.93■□□□□ 0.3
CLN3-241ENST00000635861 PRKRAO75569 313 aaKnown RBP16.93■□□□□ 0.3
CLN3-241ENST00000635861 SNX4O95219 450 aa16.93■□□□□ 0.3
CLN3-241ENST00000635861 AIFM1O95831 613 aa16.93■□□□□ 0.3
CLN3-241ENST00000635861 ALDOAP04075 364 aaKnown RBP16.93■□□□□ 0.3
CLN3-241ENST00000635861 CLPSP04118 112 aa16.93■□□□□ 0.3
CLN3-241ENST00000635861 RBP1P09455 135 aa16.93■□□□□ 0.3
CLN3-241ENST00000635861 PIK3R1P27986 724 aa16.93■□□□□ 0.3
CLN3-241ENST00000635861 NRG3P56975 720 aa16.93■□□□□ 0.3
CLN3-241ENST00000635861 CBX1P83916 185 aa16.93■□□□□ 0.3
CLN3-241ENST00000635861 FUT7Q11130 342 aa16.93■□□□□ 0.3
CLN3-241ENST00000635861 MYBPHQ13203 477 aa16.93■□□□□ 0.3
CLN3-241ENST00000635861 SF3B4Q15427 424 aaKnown RBP eCLIP16.93■□□□□ 0.32e-7■■■■□ 24.8
CLN3-241ENST00000635861 HSPB2Q16082 182 aa16.93■□□□□ 0.3
CLN3-241ENST00000635861 C6orf163Q5TEZ5 329 aa16.93■□□□□ 0.3
CLN3-241ENST00000635861 TMEM198Q66K66 360 aa16.93■□□□□ 0.3
CLN3-241ENST00000635861 PAGE2Q7Z2X7 111 aa16.93■□□□□ 0.3
CLN3-241ENST00000635861 TMEM200AQ86VY9 491 aa16.93■□□□□ 0.3
CLN3-241ENST00000635861 RELL1Q8IUW5 271 aa16.93■□□□□ 0.3
CLN3-241ENST00000635861 GALNT12Q8IXK2 581 aa16.93■□□□□ 0.3
CLN3-241ENST00000635861 MMGT1Q8N4V1 131 aa16.93■□□□□ 0.3
CLN3-241ENST00000635861 LRRN4CLQ8ND94 238 aa16.93■□□□□ 0.3
CLN3-241ENST00000635861 FUT8Q9BYC5 575 aa16.93■□□□□ 0.3
CLN3-241ENST00000635861 ACSS3Q9H6R3 686 aa16.93■□□□□ 0.3
CLN3-241ENST00000635861 CXorf21Q9HAI6 301 aa16.93■□□□□ 0.3
CLN3-241ENST00000635861 CPSF2Q9P2I0 782 aaKnown RBP16.93■□□□□ 0.3
CLN3-241ENST00000635861 RNF11Q9Y3C5 154 aa16.93■□□□□ 0.3
CLN3-241ENST00000635861 HRNRQ86YZ3 2850 aaPredicted RBP16.92■□□□□ 0.3
CLN3-241ENST00000635861 AHRRA9YTQ3 701 aa16.92■□□□□ 0.3
CLN3-241ENST00000635861 TRIM3O75382 744 aaPredicted RBP16.92■□□□□ 0.3
CLN3-241ENST00000635861 ZWINTO95229 277 aa16.92■□□□□ 0.3
CLN3-241ENST00000635861 RFPL3SP0C7P2 107 aa16.92■□□□□ 0.3
CLN3-241ENST00000635861 ADH7P40394 386 aa16.92■□□□□ 0.3
CLN3-241ENST00000635861 TRADDQ15628 312 aa16.92■□□□□ 0.3
CLN3-241ENST00000635861 GGTA1PQ4G0N0 100 aa16.92■□□□□ 0.3
CLN3-241ENST00000635861 HLA-DQA1Q5Y7H0 255 aa16.92■□□□□ 0.3
CLN3-241ENST00000635861 ULK2Q8IYT8 1036 aa16.92■□□□□ 0.3
CLN3-241ENST00000635861 NOA1Q8NC60 698 aaKnown RBP16.92■□□□□ 0.3
CLN3-241ENST00000635861 OR7G1Q8NGA0 311 aa16.92■□□□□ 0.3
CLN3-241ENST00000635861 DIO2Q92813 273 aa16.92■□□□□ 0.3
CLN3-241ENST00000635861 ATP6V1E2Q96A05 226 aa16.92■□□□□ 0.3
CLN3-241ENST00000635861 ISL2Q96A47 359 aa16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 277.6 ms