RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 PWWP2BQ6NUJ5 590 aa13.38□□□□□ -0.27
USP39-220ENST00000613444 ZFP1Q6P2D0 407 aa13.38□□□□□ -0.27
USP39-220ENST00000613444 COL26A1Q96A83 441 aa13.38□□□□□ -0.27
USP39-220ENST00000613444 GIMAP5Q96F15 307 aa13.38□□□□□ -0.27
USP39-220ENST00000613444 RSRC1Q96IZ7 334 aaKnown RBP13.38□□□□□ -0.27
USP39-220ENST00000613444 RAD21L1Q9H4I0 556 aa13.38□□□□□ -0.27
USP39-220ENST00000613444 TMEM38AQ9H6F2 299 aa13.38□□□□□ -0.27
USP39-220ENST00000613444 APMAPQ9HDC9 416 aa13.38□□□□□ -0.27
USP39-220ENST00000613444 NDOR1Q9UHB4 597 aa13.38□□□□□ -0.27
USP39-220ENST00000613444 UPK1AO00322 258 aa13.37□□□□□ -0.27
USP39-220ENST00000613444 GDF9O60383 454 aa13.37□□□□□ -0.27
USP39-220ENST00000613444 GCM2O75603 506 aaPredicted RBP13.37□□□□□ -0.27
USP39-220ENST00000613444 CDC123O75794 336 aaPredicted RBP13.37□□□□□ -0.27
USP39-220ENST00000613444 FHP07954 510 aa13.37□□□□□ -0.27
USP39-220ENST00000613444 SLC7A1P30825 629 aa13.37□□□□□ -0.27
USP39-220ENST00000613444 PCGF2P35227 344 aa13.37□□□□□ -0.27
USP39-220ENST00000613444 CRYBA2P53672 197 aa13.37□□□□□ -0.27
USP39-220ENST00000613444 TP53BP2Q13625 1128 aa13.37□□□□□ -0.27
USP39-220ENST00000613444 PACS2Q86VP3 889 aa13.37□□□□□ -0.27
USP39-220ENST00000613444 SIMC1Q8NDZ2 872 aa13.37□□□□□ -0.27
USP39-220ENST00000613444 MOAP1Q96BY2 351 aa13.37□□□□□ -0.27
USP39-220ENST00000613444 SLC22A11Q9NSA0 550 aa13.37□□□□□ -0.27
USP39-220ENST00000613444 CCM2LQ9NUG4 571 aaPredicted RBP13.37□□□□□ -0.27
USP39-220ENST00000613444 RARRES3Q9UL19 164 aa13.37□□□□□ -0.27
USP39-220ENST00000613444 CDC14AQ9UNH5 594 aa13.37□□□□□ -0.27
USP39-220ENST00000613444 SRPK3Q9UPE1 567 aa13.37□□□□□ -0.27
USP39-220ENST00000613444 DHRS12A0PJE2 317 aa13.37□□□□□ -0.27
USP39-220ENST00000613444 GSTA4O15217 222 aa13.37□□□□□ -0.27
USP39-220ENST00000613444 EMC8O43402 210 aa13.37□□□□□ -0.27
USP39-220ENST00000613444 SLC35E2P0CK97 266 aa13.37□□□□□ -0.27
USP39-220ENST00000613444 FGF5P12034 268 aa13.37□□□□□ -0.27
USP39-220ENST00000613444 PPP2R1BP30154 601 aa13.37□□□□□ -0.27
USP39-220ENST00000613444 EFNA3P52797 238 aa13.37□□□□□ -0.27
USP39-220ENST00000613444 SLC34A1Q06495 639 aa13.37□□□□□ -0.27
USP39-220ENST00000613444 MAPK11Q15759 364 aa13.37□□□□□ -0.27
USP39-220ENST00000613444 PRICKLE4Q2TBC4 344 aa13.37□□□□□ -0.27
USP39-220ENST00000613444 GCNT6Q5T4J0 391 aa13.37□□□□□ -0.27
USP39-220ENST00000613444 C1orf189Q5VU69 101 aa13.37□□□□□ -0.27
USP39-220ENST00000613444 IRAK1BP1Q5VVH5 260 aa13.37□□□□□ -0.27
USP39-220ENST00000613444 TNFAIP8L2Q6P589 184 aaPredicted RBP13.37□□□□□ -0.27
USP39-220ENST00000613444 FAM111BQ6SJ93 734 aa13.37□□□□□ -0.27
USP39-220ENST00000613444 CEACAM20Q6UY09 585 aa13.37□□□□□ -0.27
USP39-220ENST00000613444 DGAT2L6Q6ZPD8 337 aa13.37□□□□□ -0.27
USP39-220ENST00000613444 OR2L13Q8N349 312 aa13.37□□□□□ -0.27
USP39-220ENST00000613444 CTHRC1Q96CG8 243 aa13.37□□□□□ -0.27
USP39-220ENST00000613444 MAGED4Q96JG8 741 aa13.37□□□□□ -0.27
USP39-220ENST00000613444 ZNF304Q9HCX3 659 aa13.37□□□□□ -0.27
USP39-220ENST00000613444 PRTFDC1Q9NRG1 225 aa13.37□□□□□ -0.27
USP39-220ENST00000613444 DCAF13Q9NV06 445 aaKnown RBP13.37□□□□□ -0.27
USP39-220ENST00000613444 FAF1Q9UNN5 650 aaPredicted RBP13.37□□□□□ -0.27
USP39-220ENST00000613444 MRPS33Q9Y291 106 aaKnown RBP13.37□□□□□ -0.27
USP39-220ENST00000613444 EFCAB7A8K855 629 aa13.36□□□□□ -0.27
USP39-220ENST00000613444 HMGN4O00479 90 aa13.36□□□□□ -0.27
USP39-220ENST00000613444 HMGN2P05204 90 aaKnown RBP13.36□□□□□ -0.27
USP39-220ENST00000613444 CT62P0C5K7 136 aa13.36□□□□□ -0.27
USP39-220ENST00000613444 ARAFP10398 606 aa13.36□□□□□ -0.27
USP39-220ENST00000613444 CCKBRP32239 447 aa13.36□□□□□ -0.27
USP39-220ENST00000613444 CSTF2P33240 577 aaKnown RBP eCLIP13.36□□□□□ -0.27
USP39-220ENST00000613444 HSD17B7P56937 341 aa13.36□□□□□ -0.27
USP39-220ENST00000613444 DSTNP60981 165 aa13.36□□□□□ -0.27
USP39-220ENST00000613444 RBBP4Q09028 425 aa13.36□□□□□ -0.27
USP39-220ENST00000613444 TRMT12Q53H54 448 aaKnown RBP13.36□□□□□ -0.27
USP39-220ENST00000613444 MTX3Q5HYI7 312 aa13.36□□□□□ -0.27
USP39-220ENST00000613444 COX15Q7KZN9 410 aa13.36□□□□□ -0.27
USP39-220ENST00000613444 LILRA2Q8N149 483 aa13.36□□□□□ -0.27
USP39-220ENST00000613444 FAM86B1Q8N7N1 296 aa13.36□□□□□ -0.27
USP39-220ENST00000613444 C11orf65Q8NCR3 313 aa13.36□□□□□ -0.27
USP39-220ENST00000613444 AGBL5Q8NDL9 886 aa13.36□□□□□ -0.27
USP39-220ENST00000613444 NUP43Q8NFH3 380 aa13.36□□□□□ -0.27
USP39-220ENST00000613444 OR56A1Q8NGH5 318 aa13.36□□□□□ -0.27
USP39-220ENST00000613444 MIPOL1Q8TD10 442 aa13.36□□□□□ -0.27
USP39-220ENST00000613444 ZNF675Q8TD23 568 aa13.36□□□□□ -0.27
USP39-220ENST00000613444 RNF31Q96EP0 1072 aa13.36□□□□□ -0.27
USP39-220ENST00000613444 OR1F2PQ96R84 312 aa13.36□□□□□ -0.27
USP39-220ENST00000613444 ARMC1Q9NVT9 282 aa13.36□□□□□ -0.27
USP39-220ENST00000613444 TOR4AQ9NXH8 423 aa13.36□□□□□ -0.27
USP39-220ENST00000613444 MAT2BQ9NZL9 334 aa13.36□□□□□ -0.27
USP39-220ENST00000613444 NCDNQ9UBB6 729 aa13.36□□□□□ -0.27
USP39-220ENST00000613444 AP4S1Q9Y587 144 aa13.36□□□□□ -0.27
USP39-220ENST00000613444 PRAMEF27A3QJZ7 478 aa13.35□□□□□ -0.27
USP39-220ENST00000613444 CLDN4O14493 209 aa13.35□□□□□ -0.27
USP39-220ENST00000613444 SCRG1O75711 98 aa13.35□□□□□ -0.27
USP39-220ENST00000613444 BMP10O95393 424 aa13.35□□□□□ -0.27
USP39-220ENST00000613444 GPIP06744 558 aa13.35□□□□□ -0.27
USP39-220ENST00000613444 IFI6P09912 130 aa13.35□□□□□ -0.27
USP39-220ENST00000613444 MAOAP21397 527 aa13.35□□□□□ -0.27
USP39-220ENST00000613444 KDELR2P33947 212 aa13.35□□□□□ -0.27
USP39-220ENST00000613444 MAN2A2P49641 1150 aa13.35□□□□□ -0.27
USP39-220ENST00000613444 PRR5P85299 388 aa13.35□□□□□ -0.27
USP39-220ENST00000613444 SLC13A2Q13183 592 aa13.35□□□□□ -0.27
USP39-220ENST00000613444 ZNF385CQ66K41 422 aaPredicted RBP13.35□□□□□ -0.27
USP39-220ENST00000613444 PIP4P1Q86T03 277 aa13.35□□□□□ -0.27
USP39-220ENST00000613444 PPP1R3BQ86XI6 285 aa13.35□□□□□ -0.27
USP39-220ENST00000613444 PAPD5Q8NDF8 572 aaKnown RBP13.35□□□□□ -0.27
USP39-220ENST00000613444 NRG4Q8WWG1 115 aa13.35□□□□□ -0.27
USP39-220ENST00000613444 PPWD1Q96BP3 646 aaKnown RBP13.35□□□□□ -0.27
USP39-220ENST00000613444 C16orf58Q96GQ5 468 aa13.35□□□□□ -0.27
USP39-220ENST00000613444 SLC35G5Q96KT7 338 aa13.35□□□□□ -0.27
USP39-220ENST00000613444 C3orf14Q9HBI5 128 aa13.35□□□□□ -0.27
USP39-220ENST00000613444 NECTIN3Q9NQS3 549 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms