RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 SHISA5Q8N114 240 aa5.77□□□□□ -1.49
CUX1-220ENST00000607092 ZCCHC7Q8N3Z6 543 aaKnown RBP5.77□□□□□ -1.49
CUX1-220ENST00000607092 GBP7Q8N8V2 638 aaPredicted RBP5.77□□□□□ -1.49
CUX1-220ENST00000607092 SNX31Q8N9S9 440 aa5.77□□□□□ -1.49
CUX1-220ENST00000607092 C17orf47Q8NEP4 570 aa5.77□□□□□ -1.49
CUX1-220ENST00000607092 WFDC11Q8NEX6 87 aa5.77□□□□□ -1.49
CUX1-220ENST00000607092 TNIP2Q8NFZ5 429 aa5.77□□□□□ -1.49
CUX1-220ENST00000607092 ZPLD1Q8TCW7 415 aa5.77□□□□□ -1.49
CUX1-220ENST00000607092 CDKL2Q92772 493 aa5.77□□□□□ -1.49
CUX1-220ENST00000607092 SLCO2A1Q92959 643 aa5.77□□□□□ -1.49
CUX1-220ENST00000607092 RIT1Q92963 219 aa5.77□□□□□ -1.49
CUX1-220ENST00000607092 ABTB1Q969K4 478 aaPredicted RBP5.77□□□□□ -1.49
CUX1-220ENST00000607092 RGMAQ96B86 450 aa5.77□□□□□ -1.49
CUX1-220ENST00000607092 COX4I2Q96KJ9 171 aa5.77□□□□□ -1.49
CUX1-220ENST00000607092 JSRP1Q96MG2 331 aaPredicted RBP5.77□□□□□ -1.49
CUX1-220ENST00000607092 F2RL3Q96RI0 385 aa5.77□□□□□ -1.49
CUX1-220ENST00000607092 GAL3ST4Q96RP7 486 aa5.77□□□□□ -1.49
CUX1-220ENST00000607092 CSF3RQ99062 836 aa5.77□□□□□ -1.49
CUX1-220ENST00000607092 CNPPD1Q9BV87 410 aa5.77□□□□□ -1.49
CUX1-220ENST00000607092 RBM24Q9BX46 236 aaKnown RBP5.77□□□□□ -1.49
CUX1-220ENST00000607092 MS4A8Q9BY19 250 aa5.77□□□□□ -1.49
CUX1-220ENST00000607092 DERL2Q9GZP9 239 aa5.77□□□□□ -1.49
CUX1-220ENST00000607092 WWTR1Q9GZV5 400 aa5.77□□□□□ -1.49
CUX1-220ENST00000607092 SLC6A15Q9H2J7 730 aa5.77□□□□□ -1.49
CUX1-220ENST00000607092 LIME1Q9H400 295 aa5.77□□□□□ -1.49
CUX1-220ENST00000607092 LIN28AQ9H9Z2 209 aaKnown RBP5.77□□□□□ -1.49
CUX1-220ENST00000607092 LZTFL1Q9NQ48 299 aa5.77□□□□□ -1.49
CUX1-220ENST00000607092 PRDM7Q9NQW5 492 aa5.77□□□□□ -1.49
CUX1-220ENST00000607092 JKAMPQ9P055 326 aa5.77□□□□□ -1.49
CUX1-220ENST00000607092 SPRR3Q9UBC9 169 aa5.77□□□□□ -1.49
CUX1-220ENST00000607092 EGFL7Q9UHF1 273 aa5.77□□□□□ -1.49
CUX1-220ENST00000607092 C15orf41Q9Y2V0 281 aa5.77□□□□□ -1.49
CUX1-220ENST00000607092 CHCHD2Q9Y6H1 151 aaPredicted RBP5.77□□□□□ -1.49
CUX1-220ENST00000607092 MPDZO75970 2070 aa5.77□□□□□ -1.49
CUX1-220ENST00000607092 ROS1P08922 2347 aa5.76□□□□□ -1.49
CUX1-220ENST00000607092 C2orf92A0A1B0GVN3 265 aa5.76□□□□□ -1.49
CUX1-220ENST00000607092 FAM95CA0A1B0GW59 222 aa5.76□□□□□ -1.49
CUX1-220ENST00000607092 NPEPPSL1A6NEC2 478 aa5.76□□□□□ -1.49
CUX1-220ENST00000607092 LRRC3CA6NJW4 275 aa5.76□□□□□ -1.49
CUX1-220ENST00000607092 TGFBR3LH3BV60 316 aa5.76□□□□□ -1.49
CUX1-220ENST00000607092 ACOX3O15254 700 aa5.76□□□□□ -1.49
CUX1-220ENST00000607092 ZSCAN12O43309 604 aa5.76□□□□□ -1.49
CUX1-220ENST00000607092 LDB3O75112 727 aa5.76□□□□□ -1.49
CUX1-220ENST00000607092 GUCY1B2O75343 617 aa5.76□□□□□ -1.49
CUX1-220ENST00000607092 CBR3O75828 277 aa5.76□□□□□ -1.49
CUX1-220ENST00000607092 RCBTB2O95199 551 aa5.76□□□□□ -1.49
CUX1-220ENST00000607092 ETHE1O95571 254 aa5.76□□□□□ -1.49
CUX1-220ENST00000607092 SLC35E2BP0CK96 405 aa5.76□□□□□ -1.49
CUX1-220ENST00000607092 SLC35E2P0CK97 266 aa5.76□□□□□ -1.49
CUX1-220ENST00000607092 CD53P19397 219 aa5.76□□□□□ -1.49
CUX1-220ENST00000607092 ENDOUP21128 410 aaKnown RBP5.76□□□□□ -1.49
CUX1-220ENST00000607092 PTX3P26022 381 aaPredicted RBP5.76□□□□□ -1.49
CUX1-220ENST00000607092 CXCR5P32302 372 aa5.76□□□□□ -1.49
CUX1-220ENST00000607092 PIK3CGP48736 1102 aa5.76□□□□□ -1.49
CUX1-220ENST00000607092 TRPC1P48995 793 aa5.76□□□□□ -1.49
CUX1-220ENST00000607092 ZNF136P52737 540 aa5.76□□□□□ -1.49
CUX1-220ENST00000607092 SLC37A1P57057 533 aa5.76□□□□□ -1.49
CUX1-220ENST00000607092 EEFSECP57772 596 aaKnown RBP5.76□□□□□ -1.49
CUX1-220ENST00000607092 TNFRSF17Q02223 184 aa5.76□□□□□ -1.49
CUX1-220ENST00000607092 DOC2AQ14183 400 aa5.76□□□□□ -1.49
CUX1-220ENST00000607092 E2F2Q14209 437 aa5.76□□□□□ -1.49
CUX1-220ENST00000607092 SETDB1Q15047 1291 aa5.76□□□□□ -1.49
CUX1-220ENST00000607092 EBPQ15125 230 aaKnown RBP5.76□□□□□ -1.49
CUX1-220ENST00000607092 TOMM20Q15388 145 aa5.76□□□□□ -1.49
CUX1-220ENST00000607092 TSNQ15631 228 aaKnown RBP5.76□□□□□ -1.49
CUX1-220ENST00000607092 Q5PR19 223 aa5.76□□□□□ -1.49
CUX1-220ENST00000607092 DEPDC1Q5TB30 811 aa5.76□□□□□ -1.49
CUX1-220ENST00000607092 PRAMEF20Q5VT98 475 aa5.76□□□□□ -1.49
CUX1-220ENST00000607092 TIGD3Q6B0B8 471 aa5.76□□□□□ -1.49
CUX1-220ENST00000607092 OR4C11Q6IEV9 310 aa5.76□□□□□ -1.49
CUX1-220ENST00000607092 SLC30A6Q6NXT4 461 aa5.76□□□□□ -1.49
CUX1-220ENST00000607092 TTC27Q6P3X3 843 aa5.76□□□□□ -1.49
CUX1-220ENST00000607092 TMEM81Q6P7N7 255 aa5.76□□□□□ -1.49
CUX1-220ENST00000607092 VASH1Q7L8A9 365 aaPredicted RBP5.76□□□□□ -1.49
CUX1-220ENST00000607092 CHMP1BQ7LBR1 199 aa5.76□□□□□ -1.49
CUX1-220ENST00000607092 CCDC91Q7Z6B0 441 aa5.76□□□□□ -1.49
CUX1-220ENST00000607092 MILR1Q7Z6M3 343 aa5.76□□□□□ -1.49
CUX1-220ENST00000607092 ZC3HC1Q86WB0 502 aaKnown RBP5.76□□□□□ -1.49
CUX1-220ENST00000607092 C9orf40Q8IXQ3 194 aa5.76□□□□□ -1.49
CUX1-220ENST00000607092 LAS2Q8IYD9 372 aa5.76□□□□□ -1.49
CUX1-220ENST00000607092 LRRN4CLQ8ND94 238 aa5.76□□□□□ -1.49
CUX1-220ENST00000607092 TMEM52Q8NDY8 209 aa5.76□□□□□ -1.49
CUX1-220ENST00000607092 OR10G3Q8NGC4 313 aa5.76□□□□□ -1.49
CUX1-220ENST00000607092 STAG3L4Q8TBR4 150 aa5.76□□□□□ -1.49
CUX1-220ENST00000607092 ACTRT1Q8TDG2 376 aa5.76□□□□□ -1.49
CUX1-220ENST00000607092 ZNF473Q8WTR7 871 aaKnown RBP5.76□□□□□ -1.49
CUX1-220ENST00000607092 ARSGQ96EG1 525 aa5.76□□□□□ -1.49
CUX1-220ENST00000607092 TMEM41AQ96HV5 264 aa5.76□□□□□ -1.49
CUX1-220ENST00000607092 RILPQ96NA2 401 aa5.76□□□□□ -1.49
CUX1-220ENST00000607092 TRIB1Q96RU8 372 aa5.76□□□□□ -1.49
CUX1-220ENST00000607092 SLC39A3Q9BRY0 314 aa5.76□□□□□ -1.49
CUX1-220ENST00000607092 ANGPTL4Q9BY76 406 aa5.76□□□□□ -1.49
CUX1-220ENST00000607092 AICDAQ9GZX7 198 aa5.76□□□□□ -1.49
CUX1-220ENST00000607092 UBQLN3Q9H347 655 aa5.76□□□□□ -1.49
CUX1-220ENST00000607092 RHOJQ9H4E5 214 aa5.76□□□□□ -1.49
CUX1-220ENST00000607092 ACTR8Q9H981 624 aa5.76□□□□□ -1.49
CUX1-220ENST00000607092 HHATLQ9HCP6 504 aa5.76□□□□□ -1.49
CUX1-220ENST00000607092 SEMA4BQ9NPR2 832 aaPredicted RBP5.76□□□□□ -1.49
CUX1-220ENST00000607092 PSD3Q9NYI0 1048 aa5.76□□□□□ -1.49
CUX1-220ENST00000607092 CD274Q9NZQ7 290 aa5.76□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms