RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 GRK2P25098 689 aa14.11□□□□□ -0.15
LIG1-219ENST00000600055 TRHRP34981 398 aaPredicted RBP14.11□□□□□ -0.15
LIG1-219ENST00000600055 SOX18P35713 384 aa14.11□□□□□ -0.15
LIG1-219ENST00000600055 HLCSP50747 726 aa14.11□□□□□ -0.15
LIG1-219ENST00000600055 SLC37A1P57057 533 aa14.11□□□□□ -0.15
LIG1-219ENST00000600055 MGAT2Q10469 447 aa14.11□□□□□ -0.15
LIG1-219ENST00000600055 BST1Q10588 318 aa14.11□□□□□ -0.15
LIG1-219ENST00000600055 HEPACAMQ14CZ8 416 aa14.11□□□□□ -0.15
LIG1-219ENST00000600055 XKR7Q5GH72 579 aa14.11□□□□□ -0.15
LIG1-219ENST00000600055 CCDC116Q8IYX3 515 aa14.11□□□□□ -0.15
LIG1-219ENST00000600055 OR8K3Q8NH51 312 aa14.11□□□□□ -0.15
LIG1-219ENST00000600055 SUN3Q8TAQ9 357 aa14.11□□□□□ -0.15
LIG1-219ENST00000600055 GFM2Q969S9 779 aaKnown RBP14.11□□□□□ -0.15
LIG1-219ENST00000600055 ART5Q96L15 291 aa14.11□□□□□ -0.15
LIG1-219ENST00000600055 FCRL1Q96LA6 429 aa14.11□□□□□ -0.15
LIG1-219ENST00000600055 TAAR6Q96RI8 345 aa14.11□□□□□ -0.15
LIG1-219ENST00000600055 RASL10BQ96S79 203 aa14.11□□□□□ -0.15
LIG1-219ENST00000600055 BRINP2Q9C0B6 783 aa14.11□□□□□ -0.15
LIG1-219ENST00000600055 MYNNQ9NPC7 610 aa14.11□□□□□ -0.15
LIG1-219ENST00000600055 PFDN4Q9NQP4 134 aa14.11□□□□□ -0.15
LIG1-219ENST00000600055 NKIRAS1Q9NYS0 192 aa14.11□□□□□ -0.15
LIG1-219ENST00000600055 YARS2Q9Y2Z4 477 aaKnown RBP14.11□□□□□ -0.15
LIG1-219ENST00000600055 ZNF780BQ9Y6R6 833 aa14.11□□□□□ -0.15
LIG1-219ENST00000600055 ATP1B1P05026 303 aa14.1□□□□□ -0.15
LIG1-219ENST00000600055 SDC1P18827 310 aa14.1□□□□□ -0.15
LIG1-219ENST00000600055 DDCP20711 480 aa14.1□□□□□ -0.15
LIG1-219ENST00000600055 S1PR1P21453 382 aa14.1□□□□□ -0.15
LIG1-219ENST00000600055 GSTM5P46439 218 aa14.1□□□□□ -0.15
LIG1-219ENST00000600055 CYB561P49447 251 aa14.1□□□□□ -0.15
LIG1-219ENST00000600055 SSR4P51571 173 aa14.1□□□□□ -0.15
LIG1-219ENST00000600055 SLC18A1P54219 525 aa14.1□□□□□ -0.15
LIG1-219ENST00000600055 PMP22Q01453 160 aa14.1□□□□□ -0.15
LIG1-219ENST00000600055 FUT7Q11130 342 aa14.1□□□□□ -0.15
LIG1-219ENST00000600055 PDCD2Q16342 344 aaPredicted RBP14.1□□□□□ -0.15
LIG1-219ENST00000600055 PRICKLE4Q2TBC4 344 aa14.1□□□□□ -0.15
LIG1-219ENST00000600055 RPUSD3Q6P087 351 aaKnown RBP14.1□□□□□ -0.15
LIG1-219ENST00000600055 RNF111Q6ZNA4 994 aa14.1□□□□□ -0.15
LIG1-219ENST00000600055 TICAM1Q8IUC6 712 aa14.1□□□□□ -0.15
LIG1-219ENST00000600055 LRRC25Q8N386 305 aaPredicted RBP14.1□□□□□ -0.15
LIG1-219ENST00000600055 TMEM156Q8N614 296 aa14.1□□□□□ -0.15
LIG1-219ENST00000600055 SIMC1Q8NDZ2 872 aa14.1□□□□□ -0.15
LIG1-219ENST00000600055 OR5L2Q8NGL0 311 aa14.1□□□□□ -0.15
LIG1-219ENST00000600055 CLHC1Q8NHS4 586 aa14.1□□□□□ -0.15
LIG1-219ENST00000600055 GRHL3Q8TE85 626 aa14.1□□□□□ -0.15
LIG1-219ENST00000600055 METTL2AQ96IZ6 378 aaKnown RBP14.1□□□□□ -0.15
LIG1-219ENST00000600055 ATP6V1G3Q96LB4 118 aa14.1□□□□□ -0.15
LIG1-219ENST00000600055 PPP1R36Q96LQ0 422 aa14.1□□□□□ -0.15
LIG1-219ENST00000600055 TSSK3Q96PN8 268 aa14.1□□□□□ -0.15
LIG1-219ENST00000600055 GAL3ST4Q96RP7 486 aa14.1□□□□□ -0.15
LIG1-219ENST00000600055 SH3GL2Q99962 352 aa14.1□□□□□ -0.15
LIG1-219ENST00000600055 TRIM45Q9H8W5 580 aaPredicted RBP14.1□□□□□ -0.15
LIG1-219ENST00000600055 SLC35C2Q9NQQ7 365 aa14.1□□□□□ -0.15
LIG1-219ENST00000600055 PNPOQ9NVS9 261 aa14.1□□□□□ -0.15
LIG1-219ENST00000600055 MAT2BQ9NZL9 334 aa14.1□□□□□ -0.15
LIG1-219ENST00000600055 BAIAP2L1Q9UHR4 511 aa14.1□□□□□ -0.15
LIG1-219ENST00000600055 RAP2CQ9Y3L5 183 aa14.1□□□□□ -0.15
LIG1-219ENST00000600055 AKAP10O43572 662 aa14.09□□□□□ -0.15
LIG1-219ENST00000600055 SLC25A12O75746 678 aa14.09□□□□□ -0.15
LIG1-219ENST00000600055 SASH3O75995 380 aa14.09□□□□□ -0.15
LIG1-219ENST00000600055 OR6B1O95007 311 aa14.09□□□□□ -0.15
LIG1-219ENST00000600055 LRATO95237 230 aa14.09□□□□□ -0.15
LIG1-219ENST00000600055 WISP1O95388 367 aa14.09□□□□□ -0.15
LIG1-219ENST00000600055 SP1P08047 785 aa14.09□□□□□ -0.15
LIG1-219ENST00000600055 CD46P15529 392 aa14.09□□□□□ -0.15
LIG1-219ENST00000600055 SOX3P41225 446 aa14.09□□□□□ -0.15
LIG1-219ENST00000600055 MRPS35P82673 323 aaKnown RBP14.09□□□□□ -0.15
LIG1-219ENST00000600055 MAP4K2Q12851 820 aa14.09□□□□□ -0.15
LIG1-219ENST00000600055 DUSP8Q13202 625 aa14.09□□□□□ -0.15
LIG1-219ENST00000600055 EXOSC7Q15024 291 aaKnown RBP14.09□□□□□ -0.15
LIG1-219ENST00000600055 EBPQ15125 230 aaKnown RBP14.09□□□□□ -0.15
LIG1-219ENST00000600055 TRMT12Q53H54 448 aaKnown RBP14.09□□□□□ -0.15
LIG1-219ENST00000600055 PIGGQ5H8A4 983 aa14.09□□□□□ -0.15
LIG1-219ENST00000600055 C6orf163Q5TEZ5 329 aa14.09□□□□□ -0.15
LIG1-219ENST00000600055 SLC25A25Q6KCM7 469 aa14.09□□□□□ -0.15
LIG1-219ENST00000600055 ANKRD26P1Q6NSI1 321 aa14.09□□□□□ -0.15
LIG1-219ENST00000600055 IL20RBQ6UXL0 311 aa14.09□□□□□ -0.15
LIG1-219ENST00000600055 VWA5B2Q8N398 1253 aa14.09□□□□□ -0.15
LIG1-219ENST00000600055 ZNF615Q8N8J6 731 aa14.09□□□□□ -0.15
LIG1-219ENST00000600055 OR9A2Q8NGT5 310 aa14.09□□□□□ -0.15
LIG1-219ENST00000600055 NUBPLQ8TB37 319 aa14.09□□□□□ -0.15
LIG1-219ENST00000600055 ASB15Q8WXK1 588 aa14.09□□□□□ -0.15
LIG1-219ENST00000600055 SCMH1Q96GD3 660 aa14.09□□□□□ -0.15
LIG1-219ENST00000600055 PPP3R2Q96LZ3 170 aa14.09□□□□□ -0.15
LIG1-219ENST00000600055 C5orf34Q96MH7 638 aa14.09□□□□□ -0.15
LIG1-219ENST00000600055 BARD1Q99728 777 aaKnown RBP14.09□□□□□ -0.15
LIG1-219ENST00000600055 CCT7Q99832 543 aa14.09□□□□□ -0.15
LIG1-219ENST00000600055 C1orf50Q9BV19 199 aa14.09□□□□□ -0.15
LIG1-219ENST00000600055 WWTR1Q9GZV5 400 aa14.09□□□□□ -0.15
LIG1-219ENST00000600055 OR10A5Q9H207 317 aa14.09□□□□□ -0.15
LIG1-219ENST00000600055 ACBD3Q9H3P7 528 aa14.09□□□□□ -0.15
LIG1-219ENST00000600055 VIPAS39Q9H9C1 493 aa14.09□□□□□ -0.15
LIG1-219ENST00000600055 EHD3Q9NZN3 535 aa14.09□□□□□ -0.15
LIG1-219ENST00000600055 ZNF639Q9UID6 485 aa14.09□□□□□ -0.15
LIG1-219ENST00000600055 ENTPD4Q9Y227 616 aa14.09□□□□□ -0.15
LIG1-219ENST00000600055 EPB41L3Q9Y2J2 1087 aaPredicted RBP14.09□□□□□ -0.15
LIG1-219ENST00000600055 NADKO95544 446 aaPredicted RBP14.08□□□□□ -0.16
LIG1-219ENST00000600055 BCKDHAP12694 445 aa14.08□□□□□ -0.16
LIG1-219ENST00000600055 PCSK2P16519 638 aa14.08□□□□□ -0.16
LIG1-219ENST00000600055 UQCRFS1P47985 274 aa14.08□□□□□ -0.16
LIG1-219ENST00000600055 RPL14P50914 215 aaKnown RBP14.08□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms