RNA–Protein interactions for RNA: ENST00000597325.1

SHKBP1-213, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 366 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-213ENST00000597325 C14orf105Q9NVL8 296 aa11.31□□□□□ -0.6
SHKBP1-213ENST00000597325 FAM120CQ9NX05 1096 aaKnown RBP11.31□□□□□ -0.6
SHKBP1-213ENST00000597325 KCMF1Q9P0J7 381 aa11.31□□□□□ -0.6
SHKBP1-213ENST00000597325 IFT80Q9P2H3 777 aaPredicted RBP11.31□□□□□ -0.6
SHKBP1-213ENST00000597325 TAGLN3Q9UI15 199 aa11.31□□□□□ -0.6
SHKBP1-213ENST00000597325 UTS2RQ9UKP6 389 aa11.31□□□□□ -0.6
SHKBP1-213ENST00000597325 ZNF780BQ9Y6R6 833 aa11.31□□□□□ -0.6
SHKBP1-213ENST00000597325 VPS13CQ709C8 3753 aa11.3□□□□□ -0.6
SHKBP1-213ENST00000597325 LOC100653049A0A140TA62 436 aa11.3□□□□□ -0.6
SHKBP1-213ENST00000597325 GABRR3A8MPY1 467 aa11.3□□□□□ -0.6
SHKBP1-213ENST00000597325 MKRN2OSH3BPM6 223 aa11.3□□□□□ -0.6
SHKBP1-213ENST00000597325 CYR61O00622 381 aa11.3□□□□□ -0.6
SHKBP1-213ENST00000597325 TBX19O60806 448 aa11.3□□□□□ -0.6
SHKBP1-213ENST00000597325 B4GALT2O60909 372 aa11.3□□□□□ -0.6
SHKBP1-213ENST00000597325 DNAJB6O75190 326 aa11.3□□□□□ -0.6
SHKBP1-213ENST00000597325 ERAL1O75616 437 aaKnown RBP11.3□□□□□ -0.6
SHKBP1-213ENST00000597325 KRT34O76011 436 aa11.3□□□□□ -0.6
SHKBP1-213ENST00000597325 UBOX5O94941 541 aa11.3□□□□□ -0.6
SHKBP1-213ENST00000597325 CCNYL3P0C7X3 344 aa11.3□□□□□ -0.6
SHKBP1-213ENST00000597325 ESRRAP11474 423 aaPredicted RBP11.3□□□□□ -0.6
SHKBP1-213ENST00000597325 ZNF28P17035 718 aa11.3□□□□□ -0.6
SHKBP1-213ENST00000597325 ITGAXP20702 1163 aa11.3□□□□□ -0.6
SHKBP1-213ENST00000597325 CAPN3P20807 821 aa11.3□□□□□ -0.6
SHKBP1-213ENST00000597325 MNAT1P51948 309 aa11.3□□□□□ -0.6
SHKBP1-213ENST00000597325 DGKQP52824 942 aa11.3□□□□□ -0.6
SHKBP1-213ENST00000597325 LRRC74AQ0VAA2 488 aa11.3□□□□□ -0.6
SHKBP1-213ENST00000597325 SLC13A2Q13183 592 aa11.3□□□□□ -0.6
SHKBP1-213ENST00000597325 MINDY4Q4G0A6 757 aa11.3□□□□□ -0.6
SHKBP1-213ENST00000597325 VPS26BQ4G0F5 336 aa11.3□□□□□ -0.6
SHKBP1-213ENST00000597325 ATP1A1-AS1Q5TC04 95 aa11.3□□□□□ -0.6
SHKBP1-213ENST00000597325 OR4F3Q6IEY1 312 aa11.3□□□□□ -0.6
SHKBP1-213ENST00000597325 C6orf15Q6UXA7 325 aaPredicted RBP11.3□□□□□ -0.6
SHKBP1-213ENST00000597325 SPNS3Q6ZMD2 512 aa11.3□□□□□ -0.6
SHKBP1-213ENST00000597325 MSANTD1Q6ZTZ1 278 aa11.3□□□□□ -0.6
SHKBP1-213ENST00000597325 FUNDC1Q8IVP5 155 aa11.3□□□□□ -0.6
SHKBP1-213ENST00000597325 MCEMP1Q8IX19 187 aa11.3□□□□□ -0.6
SHKBP1-213ENST00000597325 ZNF595Q8IYB9 648 aa11.3□□□□□ -0.6
SHKBP1-213ENST00000597325 SLC38A9Q8NBW4 561 aa11.3□□□□□ -0.6
SHKBP1-213ENST00000597325 GALNT6Q8NCL4 622 aa11.3□□□□□ -0.6
SHKBP1-213ENST00000597325 OR8J2Q8NGG1 315 aa11.3□□□□□ -0.6
SHKBP1-213ENST00000597325 ZFP28Q8NHY6 868 aa11.3□□□□□ -0.6
SHKBP1-213ENST00000597325 VPS33AQ96AX1 596 aa11.3□□□□□ -0.6
SHKBP1-213ENST00000597325 BBS4Q96RK4 519 aa11.3□□□□□ -0.6
SHKBP1-213ENST00000597325 PRTFDC1Q9NRG1 225 aa11.3□□□□□ -0.6
SHKBP1-213ENST00000597325 ARL8BQ9NVJ2 186 aa11.3□□□□□ -0.6
SHKBP1-213ENST00000597325 C5AR2Q9P296 337 aa11.3□□□□□ -0.6
SHKBP1-213ENST00000597325 LEF1Q9UJU2 399 aaPredicted RBP11.3□□□□□ -0.6
SHKBP1-213ENST00000597325 EXO1Q9UQ84 846 aaKnown RBP11.3□□□□□ -0.6
SHKBP1-213ENST00000597325 NDUFAF1Q9Y375 327 aa11.3□□□□□ -0.6
SHKBP1-213ENST00000597325 TMEM184BQ9Y519 407 aaPredicted RBP11.3□□□□□ -0.6
SHKBP1-213ENST00000597325 CROCCQ5TZA2 2017 aa11.3□□□□□ -0.6
SHKBP1-213ENST00000597325 A0A1W2PP18 115 aa11.29□□□□□ -0.6
SHKBP1-213ENST00000597325 FAM227AF5H4B4 570 aa11.29□□□□□ -0.6
SHKBP1-213ENST00000597325 MRASO14807 208 aa11.29□□□□□ -0.6
SHKBP1-213ENST00000597325 RAD1O60671 282 aa11.29□□□□□ -0.6
SHKBP1-213ENST00000597325 CDC123O75794 336 aaPredicted RBP11.29□□□□□ -0.6
SHKBP1-213ENST00000597325 CBX6O95503 412 aa11.29□□□□□ -0.6
SHKBP1-213ENST00000597325 LAMP1P11279 417 aa11.29□□□□□ -0.6
SHKBP1-213ENST00000597325 CALB2P22676 271 aa11.29□□□□□ -0.6
SHKBP1-213ENST00000597325 ZFP36L2P47974 494 aaKnown RBP11.29□□□□□ -0.6
SHKBP1-213ENST00000597325 HSD17B7P56937 341 aa11.29□□□□□ -0.6
SHKBP1-213ENST00000597325 MXRA7P84157 204 aa11.29□□□□□ -0.6
SHKBP1-213ENST00000597325 MAPKAPK3Q16644 382 aa11.29□□□□□ -0.6
SHKBP1-213ENST00000597325 COQ5Q5HYK3 327 aa11.29□□□□□ -0.6
SHKBP1-213ENST00000597325 ZNF385CQ66K41 422 aaPredicted RBP11.29□□□□□ -0.6
SHKBP1-213ENST00000597325 REP15Q6BDI9 236 aa11.29□□□□□ -0.6
SHKBP1-213ENST00000597325 COX15Q7KZN9 410 aa11.29□□□□□ -0.6
SHKBP1-213ENST00000597325 ZC3H7AQ8IWR0 971 aaKnown RBP11.29□□□□□ -0.6
SHKBP1-213ENST00000597325 PCYOX1LQ8NBM8 494 aa11.29□□□□□ -0.6
SHKBP1-213ENST00000597325 OR4K14Q8NGD5 310 aa11.29□□□□□ -0.6
SHKBP1-213ENST00000597325 MIEF2Q96C03 454 aa11.29□□□□□ -0.6
SHKBP1-213ENST00000597325 COQ8BQ96D53 544 aa11.29□□□□□ -0.6
SHKBP1-213ENST00000597325 ZBED6CLQ96FA7 236 aaPredicted RBP11.29□□□□□ -0.6
SHKBP1-213ENST00000597325 NSL1Q96IY1 281 aa11.29□□□□□ -0.6
SHKBP1-213ENST00000597325 ITCHQ96J02 903 aa11.29□□□□□ -0.6
SHKBP1-213ENST00000597325 SPRY4Q9C004 299 aa11.29□□□□□ -0.6
SHKBP1-213ENST00000597325 SLC35C2Q9NQQ7 365 aa11.29□□□□□ -0.6
SHKBP1-213ENST00000597325 TAS2R7Q9NYW3 318 aa11.29□□□□□ -0.6
SHKBP1-213ENST00000597325 CTSFQ9UBX1 484 aa11.29□□□□□ -0.6
SHKBP1-213ENST00000597325 NXT1Q9UKK6 140 aaKnown RBP11.29□□□□□ -0.6
SHKBP1-213ENST00000597325 PCDHGB4Q9UN71 923 aa11.29□□□□□ -0.6
SHKBP1-213ENST00000597325 MMACHCQ9Y4U1 282 aa11.29□□□□□ -0.6
SHKBP1-213ENST00000597325 TNRC6AQ8NDV7 1962 aaKnown RBP11.28□□□□□ -0.6
SHKBP1-213ENST00000597325 MAP1AP78559 2803 aaPredicted RBP11.28□□□□□ -0.6
SHKBP1-213ENST00000597325 NUP210LQ5VU65 1888 aa11.28□□□□□ -0.6
SHKBP1-213ENST00000597325 LOC101059948A0A1B0GTJ6 334 aa11.28□□□□□ -0.6
SHKBP1-213ENST00000597325 SYNDIG1LA6NDD5 238 aa11.28□□□□□ -0.6
SHKBP1-213ENST00000597325 RNASET2O00584 256 aaKnown RBP11.28□□□□□ -0.6
SHKBP1-213ENST00000597325 PGRMC2O15173 223 aa11.28□□□□□ -0.6
SHKBP1-213ENST00000597325 HNRNPCL1O60812 293 aaKnown RBP11.28□□□□□ -0.6
SHKBP1-213ENST00000597325 BMP10O95393 424 aa11.28□□□□□ -0.6
SHKBP1-213ENST00000597325 DLGAP3O95886 979 aa11.28□□□□□ -0.6
SHKBP1-213ENST00000597325 ONECUT2O95948 504 aa11.28□□□□□ -0.6
SHKBP1-213ENST00000597325 ALBP02768 609 aa11.28□□□□□ -0.6
SHKBP1-213ENST00000597325 CD63P08962 238 aa11.28□□□□□ -0.6
SHKBP1-213ENST00000597325 CSNK2A2P19784 350 aaPredicted RBP11.28□□□□□ -0.6
SHKBP1-213ENST00000597325 MPIP34949 423 aa11.28□□□□□ -0.6
SHKBP1-213ENST00000597325 GPC1P35052 558 aa11.28□□□□□ -0.6
SHKBP1-213ENST00000597325 CPA2P48052 419 aa11.28□□□□□ -0.6
SHKBP1-213ENST00000597325 NUDT2P50583 147 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms