RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 UGDHO60701 494 aa14.49□□□□□ -0.09
UPF1-204ENST00000596842 UBL4AP11441 157 aa14.49□□□□□ -0.09
UPF1-204ENST00000596842 TIMP2P16035 220 aa14.49□□□□□ -0.09
UPF1-204ENST00000596842 CSTF2P33240 577 aaKnown RBP eCLIP14.49□□□□□ -0.09
UPF1-204ENST00000596842 C6orf120Q7Z4R8 191 aa14.49□□□□□ -0.09
UPF1-204ENST00000596842 NLRP8Q86W28 1048 aa14.49□□□□□ -0.09
UPF1-204ENST00000596842 OR5AR1Q8NGP9 310 aa14.49□□□□□ -0.09
UPF1-204ENST00000596842 SLC7A13Q8TCU3 470 aa14.49□□□□□ -0.09
UPF1-204ENST00000596842 PRAP1Q96NZ9 151 aa14.49□□□□□ -0.09
UPF1-204ENST00000596842 HHIPQ96QV1 700 aa14.49□□□□□ -0.09
UPF1-204ENST00000596842 ANKRA2Q9H9E1 313 aa14.49□□□□□ -0.09
UPF1-204ENST00000596842 RC3H2Q9HBD1 1191 aaKnown RBP14.49□□□□□ -0.09
UPF1-204ENST00000596842 ATPIF1Q9UII2 106 aa14.49□□□□□ -0.09
UPF1-204ENST00000596842 HS3ST2Q9Y278 367 aa14.49□□□□□ -0.09
UPF1-204ENST00000596842 HSPB11Q9Y547 144 aa14.49□□□□□ -0.09
UPF1-204ENST00000596842 CENPBD1B2RD01 187 aa14.48□□□□□ -0.09
UPF1-204ENST00000596842 OSMP13725 252 aa14.48□□□□□ -0.09
UPF1-204ENST00000596842 RRM2BQ7LG56 351 aa14.48□□□□□ -0.09
UPF1-204ENST00000596842 ATP6V1C2Q8NEY4 427 aa14.48□□□□□ -0.09
UPF1-204ENST00000596842 MAGEB10Q96LZ2 347 aaPredicted RBP14.48□□□□□ -0.09
UPF1-204ENST00000596842 NELL2Q99435 816 aa14.48□□□□□ -0.09
UPF1-204ENST00000596842 HDHD5Q9BXW7 423 aa14.48□□□□□ -0.09
UPF1-204ENST00000596842 OSGEPL1Q9H4B0 414 aa14.48□□□□□ -0.09
UPF1-204ENST00000596842 SLAMF7Q9NQ25 335 aa14.48□□□□□ -0.09
UPF1-204ENST00000596842 VCANP13611 3396 aa14.48□□□□□ -0.09
UPF1-204ENST00000596842 MMP20O60882 483 aa14.48□□□□□ -0.09
UPF1-204ENST00000596842 ARAFP10398 606 aa14.48□□□□□ -0.09
UPF1-204ENST00000596842 SDHBP21912 280 aa14.48□□□□□ -0.09
UPF1-204ENST00000596842 TAP2Q03519 686 aa14.48□□□□□ -0.09
UPF1-204ENST00000596842 INSL4Q14641 139 aa14.48□□□□□ -0.09
UPF1-204ENST00000596842 NCF4Q15080 339 aa14.48□□□□□ -0.09
UPF1-204ENST00000596842 TCTN3Q6NUS6 607 aa14.48□□□□□ -0.09
UPF1-204ENST00000596842 GPR155Q7Z3F1 870 aa14.48□□□□□ -0.09
UPF1-204ENST00000596842 UBQLNLQ8IYU4 475 aa14.48□□□□□ -0.09
UPF1-204ENST00000596842 FTSJ1Q9UET6 329 aa14.48□□□□□ -0.09
UPF1-204ENST00000596842 KIAA0100Q14667 2235 aaKnown RBP14.48□□□□□ -0.09
UPF1-204ENST00000596842 FAM172BPA6NC97 362 aa14.48□□□□□ -0.09
UPF1-204ENST00000596842 SMLR1H3BR10 107 aa14.48□□□□□ -0.09
UPF1-204ENST00000596842 LATO43561 262 aa14.48□□□□□ -0.09
UPF1-204ENST00000596842 POP7O75817 140 aaKnown RBP14.48□□□□□ -0.09
UPF1-204ENST00000596842 HTR3DQ70Z44 454 aa14.48□□□□□ -0.09
UPF1-204ENST00000596842 LAPTM4BQ86VI4 370 aa14.48□□□□□ -0.09
UPF1-204ENST00000596842 C19orf18Q8NEA5 215 aa14.48□□□□□ -0.09
UPF1-204ENST00000596842 NLGN4YQ8NFZ3 816 aaPredicted RBP14.48□□□□□ -0.09
UPF1-204ENST00000596842 OR4D11Q8NGI4 311 aa14.48□□□□□ -0.09
UPF1-204ENST00000596842 TRMT61BQ9BVS5 477 aaKnown RBP14.48□□□□□ -0.09
UPF1-204ENST00000596842 C11orf54Q9H0W9 315 aaPredicted RBP14.48□□□□□ -0.09
UPF1-204ENST00000596842 ASAH2Q9NR71 780 aa14.48□□□□□ -0.09
UPF1-204ENST00000596842 CUEDC1Q9NWM3 386 aaPredicted RBP14.48□□□□□ -0.09
UPF1-204ENST00000596842 ATG2BQ96BY7 2078 aa14.47□□□□□ -0.09
UPF1-204ENST00000596842 CTSLP07711 333 aa14.47□□□□□ -0.09
UPF1-204ENST00000596842 HSD3B1P14060 373 aa14.47□□□□□ -0.09
UPF1-204ENST00000596842 PTX3P26022 381 aaPredicted RBP14.47□□□□□ -0.09
UPF1-204ENST00000596842 ELAVL4P26378 380 aaKnown RBP14.47□□□□□ -0.09
UPF1-204ENST00000596842 HSD3B2P26439 372 aa14.47□□□□□ -0.09
UPF1-204ENST00000596842 APEX1P27695 318 aaKnown RBP14.47□□□□□ -0.09
UPF1-204ENST00000596842 CCR2P41597 374 aa14.47□□□□□ -0.09
UPF1-204ENST00000596842 RBBP4Q09028 425 aa14.47□□□□□ -0.09
UPF1-204ENST00000596842 KCNC3Q14003 757 aa14.47□□□□□ -0.09
UPF1-204ENST00000596842 IL18Q14116 193 aa14.47□□□□□ -0.09
UPF1-204ENST00000596842 RNASE12Q5GAN4 147 aaKnown RBP14.47□□□□□ -0.09
UPF1-204ENST00000596842 TRIQKQ629K1 86 aa14.47□□□□□ -0.09
UPF1-204ENST00000596842 TMEM215Q68D42 235 aa14.47□□□□□ -0.09
UPF1-204ENST00000596842 TP53I13Q8NBR0 393 aaPredicted RBP14.47□□□□□ -0.09
UPF1-204ENST00000596842 OR56A3Q8NH54 315 aa14.47□□□□□ -0.09
UPF1-204ENST00000596842 PUM2Q8TB72 1066 aaKnown RBP eCLIP14.47□□□□□ -0.09
UPF1-204ENST00000596842 EFCAB11Q9BUY7 163 aa14.47□□□□□ -0.09
UPF1-204ENST00000596842 MND1Q9BWT6 205 aa14.47□□□□□ -0.09
UPF1-204ENST00000596842 EGLN3Q9H6Z9 239 aa14.47□□□□□ -0.09
UPF1-204ENST00000596842 SRRDQ9UH36 339 aa14.47□□□□□ -0.09
UPF1-204ENST00000596842 RPL36Q9Y3U8 105 aaKnown RBP14.47□□□□□ -0.09
UPF1-204ENST00000596842 HCFC2Q9Y5Z7 792 aa14.47□□□□□ -0.09
UPF1-204ENST00000596842 SCG5P05408 212 aa14.47□□□□□ -0.09
UPF1-204ENST00000596842 RFX2P48378 723 aa14.47□□□□□ -0.09
UPF1-204ENST00000596842 P2RX3P56373 397 aa14.47□□□□□ -0.09
UPF1-204ENST00000596842 NTHL1P78549 312 aa14.47□□□□□ -0.09
UPF1-204ENST00000596842 RAB33AQ14088 237 aa14.47□□□□□ -0.09
UPF1-204ENST00000596842 ZNF79Q15937 498 aa14.47□□□□□ -0.09
UPF1-204ENST00000596842 GPAT3Q53EU6 434 aa14.47□□□□□ -0.09
UPF1-204ENST00000596842 ZDHHC20Q5W0Z9 365 aa14.47□□□□□ -0.09
UPF1-204ENST00000596842 ZNF57Q68EA5 555 aaPredicted RBP14.47□□□□□ -0.09
UPF1-204ENST00000596842 KIAA1161Q6NSJ0 714 aa14.47□□□□□ -0.09
UPF1-204ENST00000596842 METTL3Q86U44 580 aaKnown RBP14.47□□□□□ -0.09
UPF1-204ENST00000596842 GPR32P1Q8NGA4 272 aa14.47□□□□□ -0.09
UPF1-204ENST00000596842 OR9A1PQ8NGU1 263 aa14.47□□□□□ -0.09
UPF1-204ENST00000596842 DOK4Q8TEW6 326 aa14.47□□□□□ -0.09
UPF1-204ENST00000596842 SPATA9Q9BWV2 254 aa14.47□□□□□ -0.09
UPF1-204ENST00000596842 CDCA4Q9BXL8 241 aa14.47□□□□□ -0.09
UPF1-204ENST00000596842 ENOPH1Q9UHY7 261 aa14.47□□□□□ -0.09
UPF1-204ENST00000596842 CLEC4AQ9UMR7 237 aa14.47□□□□□ -0.09
UPF1-204ENST00000596842 STUB1Q9UNE7 303 aa14.47□□□□□ -0.09
UPF1-204ENST00000596842 SCN8AQ9UQD0 1980 aa14.47□□□□□ -0.09
UPF1-204ENST00000596842 PDPK1O15530 556 aa14.47□□□□□ -0.09
UPF1-204ENST00000596842 HOXC11O43248 304 aaPredicted RBP14.47□□□□□ -0.09
UPF1-204ENST00000596842 MPZL2O60487 215 aa14.47□□□□□ -0.09
UPF1-204ENST00000596842 CCNYL3P0C7X3 344 aa14.47□□□□□ -0.09
UPF1-204ENST00000596842 ETV5P41161 510 aa14.47□□□□□ -0.09
UPF1-204ENST00000596842 ETV1P50549 477 aa14.47□□□□□ -0.09
UPF1-204ENST00000596842 TEAD2Q15562 447 aa14.47□□□□□ -0.09
UPF1-204ENST00000596842 PRAMEF14Q5SWL7 426 aa14.47□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms