RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 POLR3GO15318 223 aaPredicted RBP9.83□□□□□ -0.84
LIG1-210ENST00000596332 KLHL41O60662 606 aa9.83□□□□□ -0.84
LIG1-210ENST00000596332 PSMG1O95456 288 aa9.83□□□□□ -0.84
LIG1-210ENST00000596332 VIMP08670 466 aaKnown RBP9.83□□□□□ -0.84
LIG1-210ENST00000596332 CSNK2A2P19784 350 aaPredicted RBP9.83□□□□□ -0.84
LIG1-210ENST00000596332 PRPS1L1P21108 318 aa9.83□□□□□ -0.84
LIG1-210ENST00000596332 MAPK1P28482 360 aa9.83□□□□□ -0.84
LIG1-210ENST00000596332 SSTR4P31391 388 aa9.83□□□□□ -0.84
LIG1-210ENST00000596332 MAP3K8P41279 467 aa9.83□□□□□ -0.84
LIG1-210ENST00000596332 NME5P56597 212 aa9.83□□□□□ -0.84
LIG1-210ENST00000596332 MRPS35P82673 323 aaKnown RBP9.83□□□□□ -0.84
LIG1-210ENST00000596332 ACTN3Q08043 901 aaPredicted RBP9.83□□□□□ -0.84
LIG1-210ENST00000596332 SF3A3Q12874 501 aaKnown RBP eCLIP9.83□□□□□ -0.84
LIG1-210ENST00000596332 AIMP2Q13155 320 aaKnown RBP9.83□□□□□ -0.84
LIG1-210ENST00000596332 MAD2L1Q13257 205 aaPredicted RBP9.83□□□□□ -0.84
LIG1-210ENST00000596332 BTBD16Q32M84 506 aa9.83□□□□□ -0.84
LIG1-210ENST00000596332 PDCD4Q53EL6 469 aaKnown RBP9.83□□□□□ -0.84
LIG1-210ENST00000596332 EXOSC6Q5RKV6 272 aaKnown RBP9.83□□□□□ -0.84
LIG1-210ENST00000596332 BORAQ6PGQ7 559 aa9.83□□□□□ -0.84
LIG1-210ENST00000596332 PAOXQ6QHF9 649 aa9.83□□□□□ -0.84
LIG1-210ENST00000596332 C16orf47Q6ZP98 133 aaPredicted RBP9.83□□□□□ -0.84
LIG1-210ENST00000596332 ZNF227Q86WZ6 799 aa9.83□□□□□ -0.84
LIG1-210ENST00000596332 C9orf40Q8IXQ3 194 aa9.83□□□□□ -0.84
LIG1-210ENST00000596332 LRRC25Q8N386 305 aaPredicted RBP9.83□□□□□ -0.84
LIG1-210ENST00000596332 ZNF441Q8N8Z8 693 aa9.83□□□□□ -0.84
LIG1-210ENST00000596332 OR7G2Q8NG99 324 aa9.83□□□□□ -0.84
LIG1-210ENST00000596332 OR8J2Q8NGG1 315 aa9.83□□□□□ -0.84
LIG1-210ENST00000596332 OR9A2Q8NGT5 310 aa9.83□□□□□ -0.84
LIG1-210ENST00000596332 CDC26Q8NHZ8 85 aa9.83□□□□□ -0.84
LIG1-210ENST00000596332 PSMA8Q8TAA3 256 aa9.83□□□□□ -0.84
LIG1-210ENST00000596332 BRIX1Q8TDN6 353 aaKnown RBP9.83□□□□□ -0.84
LIG1-210ENST00000596332 RIT1Q92963 219 aa9.83□□□□□ -0.84
LIG1-210ENST00000596332 CHMP6Q96FZ7 201 aa9.83□□□□□ -0.84
LIG1-210ENST00000596332 ABHD17AQ96GS6 310 aa9.83□□□□□ -0.84
LIG1-210ENST00000596332 RBM18Q96H35 190 aaKnown RBP9.83□□□□□ -0.84
LIG1-210ENST00000596332 FBXL20Q96IG2 436 aa9.83□□□□□ -0.84
LIG1-210ENST00000596332 THOC3Q96J01 351 aaKnown RBP9.83□□□□□ -0.84
LIG1-210ENST00000596332 FER1L6-AS2Q96M78 137 aa9.83□□□□□ -0.84
LIG1-210ENST00000596332 DGAT2Q96PD7 388 aa9.83□□□□□ -0.84
LIG1-210ENST00000596332 BBC3Q96PG8 261 aaPredicted RBP9.83□□□□□ -0.84
LIG1-210ENST00000596332 SMAD5Q99717 465 aaKnown RBP9.83□□□□□ -0.84
LIG1-210ENST00000596332 TMEM120AQ9BXJ8 343 aa9.83□□□□□ -0.84
LIG1-210ENST00000596332 SERHLQ9NQF3 203 aa9.83□□□□□ -0.84
LIG1-210ENST00000596332 NTMQ9P121 344 aa9.83□□□□□ -0.84
LIG1-210ENST00000596332 G3BP2Q9UN86 482 aaKnown RBP9.83□□□□□ -0.84
LIG1-210ENST00000596332 DTX4Q9Y2E6 619 aa9.83□□□□□ -0.84
LIG1-210ENST00000596332 PIEZO2Q9H5I5 2752 aa9.83□□□□□ -0.84
LIG1-210ENST00000596332 ZFYVE26Q68DK2 2539 aa9.83□□□□□ -0.84
LIG1-210ENST00000596332 GIMAP1-GIMAP5A0A087WTJ2 511 aa9.82□□□□□ -0.84
LIG1-210ENST00000596332 A6NL46 340 aa9.82□□□□□ -0.84
LIG1-210ENST00000596332 PLOD2O00469 737 aa9.82□□□□□ -0.84
LIG1-210ENST00000596332 PLOD3O60568 738 aa9.82□□□□□ -0.84
LIG1-210ENST00000596332 SHOX2O60902 331 aaPredicted RBP9.82□□□□□ -0.84
LIG1-210ENST00000596332 NADKO95544 446 aaPredicted RBP9.82□□□□□ -0.84
LIG1-210ENST00000596332 IFNA16P05015 189 aa9.82□□□□□ -0.84
LIG1-210ENST00000596332 FAM87AP0C7U9 286 aa9.82□□□□□ -0.84
LIG1-210ENST00000596332 PCSK2P16519 638 aa9.82□□□□□ -0.84
LIG1-210ENST00000596332 HOXB9P17482 250 aaPredicted RBP9.82□□□□□ -0.84
LIG1-210ENST00000596332 PTPN6P29350 595 aa9.82□□□□□ -0.84
LIG1-210ENST00000596332 CD97P48960 835 aa9.82□□□□□ -0.84
LIG1-210ENST00000596332 EMDP50402 254 aa9.82□□□□□ -0.84
LIG1-210ENST00000596332 ST13P50502 369 aaKnown RBP9.82□□□□□ -0.84
LIG1-210ENST00000596332 CDK9P50750 372 aaKnown RBP9.82□□□□□ -0.84
LIG1-210ENST00000596332 DGKQP52824 942 aa9.82□□□□□ -0.84
LIG1-210ENST00000596332 POLE2P56282 527 aa9.82□□□□□ -0.84
LIG1-210ENST00000596332 PLIN5Q00G26 463 aa9.82□□□□□ -0.84
LIG1-210ENST00000596332 RAPSNQ13702 412 aa9.82□□□□□ -0.84
LIG1-210ENST00000596332 ZNF267Q14586 743 aaPredicted RBP9.82□□□□□ -0.84
LIG1-210ENST00000596332 MYBPC3Q14896 1274 aa9.82□□□□□ -0.84
LIG1-210ENST00000596332 MLC1Q15049 377 aa9.82□□□□□ -0.84
LIG1-210ENST00000596332 EXT1Q16394 746 aa9.82□□□□□ -0.84
LIG1-210ENST00000596332 GSTA3Q16772 222 aa9.82□□□□□ -0.84
LIG1-210ENST00000596332 SPANXN4Q5MJ08 99 aa9.82□□□□□ -0.84
LIG1-210ENST00000596332 ZNF468Q5VIY5 522 aaPredicted RBP9.82□□□□□ -0.84
LIG1-210ENST00000596332 FCRLBQ6BAA4 426 aa9.82□□□□□ -0.84
LIG1-210ENST00000596332 NXNQ6DKJ4 435 aa9.82□□□□□ -0.84
LIG1-210ENST00000596332 OR4F3Q6IEY1 312 aa9.82□□□□□ -0.84
LIG1-210ENST00000596332 LYPD8Q6UX82 237 aa9.82□□□□□ -0.84
LIG1-210ENST00000596332 PIGWQ7Z7B1 504 aa9.82□□□□□ -0.84
LIG1-210ENST00000596332 KBTBD2Q8IY47 623 aa9.82□□□□□ -0.84
LIG1-210ENST00000596332 CPSF7Q8N684 471 aaKnown RBP9.82□□□□□ -0.84
LIG1-210ENST00000596332 OR14A16Q8NHC5 309 aa9.82□□□□□ -0.84
LIG1-210ENST00000596332 HOXB13Q92826 284 aaPredicted RBP9.82□□□□□ -0.84
LIG1-210ENST00000596332 KAT2AQ92830 837 aa9.82□□□□□ -0.84
LIG1-210ENST00000596332 ADIPOR1Q96A54 375 aa9.82□□□□□ -0.84
LIG1-210ENST00000596332 PPCDCQ96CD2 204 aa9.82□□□□□ -0.84
LIG1-210ENST00000596332 ELP4Q96EB1 424 aa9.82□□□□□ -0.84
LIG1-210ENST00000596332 GIMAP5Q96F15 307 aa9.82□□□□□ -0.84
LIG1-210ENST00000596332 LHPPQ9H008 270 aa9.82□□□□□ -0.84
LIG1-210ENST00000596332 LIN28AQ9H9Z2 209 aaKnown RBP9.82□□□□□ -0.84
LIG1-210ENST00000596332 ACSS1Q9NUB1 689 aaPredicted RBP9.82□□□□□ -0.84
LIG1-210ENST00000596332 SH3BP4Q9P0V3 963 aa9.82□□□□□ -0.84
LIG1-210ENST00000596332 KLHL14Q9P2G3 628 aa9.82□□□□□ -0.84
LIG1-210ENST00000596332 ADAM21Q9UKJ8 722 aa9.82□□□□□ -0.84
LIG1-210ENST00000596332 PSME2Q9UL46 239 aa9.82□□□□□ -0.84
LIG1-210ENST00000596332 ERVK-19Q9WJR5 959 aa9.82□□□□□ -0.84
LIG1-210ENST00000596332 PCDHGA9Q9Y5G4 932 aaKnown RBP9.82□□□□□ -0.84
LIG1-210ENST00000596332 CLCA3PQ9Y6N3 262 aa9.82□□□□□ -0.84
LIG1-210ENST00000596332 BOD1L1Q8NFC6 3051 aa9.82□□□□□ -0.84
LIG1-210ENST00000596332 CHD6Q8TD26 2715 aa9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms