RNA–Protein interactions for RNA: ENST00000596104.5

LIG1-209, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 531 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-209ENST00000596104 C15orf41Q9Y2V0 281 aa9.12□□□□□ -0.95
LIG1-209ENST00000596104 SLC6A5Q9Y345 797 aa9.12□□□□□ -0.95
LIG1-209ENST00000596104 A0A1W2PR48 441 aa9.11□□□□□ -0.95
LIG1-209ENST00000596104 CXorf49A8MYA2 514 aaPredicted RBP9.11□□□□□ -0.95
LIG1-209ENST00000596104 EEF1E1-BLOC1S5C9J1V9 151 aa9.11□□□□□ -0.95
LIG1-209ENST00000596104 TP53I11O14683 189 aa9.11□□□□□ -0.95
LIG1-209ENST00000596104 EEF1E1O43324 174 aaKnown RBP9.11□□□□□ -0.95
LIG1-209ENST00000596104 TMPRSS11DO60235 418 aa9.11□□□□□ -0.95
LIG1-209ENST00000596104 OR10H2O60403 315 aa9.11□□□□□ -0.95
LIG1-209ENST00000596104 TRAPPC6AO75865 159 aa9.11□□□□□ -0.95
LIG1-209ENST00000596104 SEC31AO94979 1220 aaKnown RBP9.11□□□□□ -0.95
LIG1-209ENST00000596104 SNX4O95219 450 aa9.11□□□□□ -0.95
LIG1-209ENST00000596104 HEXAP06865 529 aa9.11□□□□□ -0.95
LIG1-209ENST00000596104 PCNAP12004 261 aa9.11□□□□□ -0.95
LIG1-209ENST00000596104 BMP7P18075 431 aa9.11□□□□□ -0.95
LIG1-209ENST00000596104 GALNSP34059 522 aa9.11□□□□□ -0.95
LIG1-209ENST00000596104 OPRM1P35372 400 aa9.11□□□□□ -0.95
LIG1-209ENST00000596104 SOX18P35713 384 aa9.11□□□□□ -0.95
LIG1-209ENST00000596104 GMPRP36959 345 aa9.11□□□□□ -0.95
LIG1-209ENST00000596104 FBXW4P57775 412 aa9.11□□□□□ -0.95
LIG1-209ENST00000596104 NKX6-1P78426 367 aaPredicted RBP9.11□□□□□ -0.95
LIG1-209ENST00000596104 ILF2Q12905 390 aaKnown RBP9.11□□□□□ -0.95
LIG1-209ENST00000596104 PDIA2Q13087 525 aaKnown RBP9.11□□□□□ -0.95
LIG1-209ENST00000596104 PCBP2Q15366 365 aaKnown RBP eCLIP9.11□□□□□ -0.95
LIG1-209ENST00000596104 SF3B4Q15427 424 aaKnown RBP eCLIP9.11□□□□□ -0.95
LIG1-209ENST00000596104 ZKSCAN8Q15776 578 aaPredicted RBP9.11□□□□□ -0.95
LIG1-209ENST00000596104 EIPR1Q53HC9 387 aa9.11□□□□□ -0.95
LIG1-209ENST00000596104 SHEQ5VZ18 495 aa9.11□□□□□ -0.95
LIG1-209ENST00000596104 CLEC9AQ6UXN8 241 aa9.11□□□□□ -0.95
LIG1-209ENST00000596104 SYDE1Q6ZW31 735 aaPredicted RBP9.11□□□□□ -0.95
LIG1-209ENST00000596104 TAGAPQ8N103 731 aa9.11□□□□□ -0.95
LIG1-209ENST00000596104 C9orf106Q8NAJ2 232 aa9.11□□□□□ -0.95
LIG1-209ENST00000596104 HUS1BQ8NHY5 278 aa9.11□□□□□ -0.95
LIG1-209ENST00000596104 RIT1Q92963 219 aa9.11□□□□□ -0.95
LIG1-209ENST00000596104 TP53INP1Q96A56 240 aa9.11□□□□□ -0.95
LIG1-209ENST00000596104 RGMAQ96B86 450 aa9.11□□□□□ -0.95
LIG1-209ENST00000596104 TSPAN17Q96FV3 270 aa9.11□□□□□ -0.95
LIG1-209ENST00000596104 UBXN10Q96LJ8 280 aa9.11□□□□□ -0.95
LIG1-209ENST00000596104 DACH2Q96NX9 599 aa9.11□□□□□ -0.95
LIG1-209ENST00000596104 TRIB1Q96RU8 372 aa9.11□□□□□ -0.95
LIG1-209ENST00000596104 SECISBP2Q96T21 854 aaKnown RBP9.11□□□□□ -0.95
LIG1-209ENST00000596104 GPR22Q99680 433 aa9.11□□□□□ -0.95
LIG1-209ENST00000596104 CALHM2Q9HA72 323 aa9.11□□□□□ -0.95
LIG1-209ENST00000596104 SNX15Q9NRS6 342 aa9.11□□□□□ -0.95
LIG1-209ENST00000596104 BEX4Q9NWD9 120 aaPredicted RBP9.11□□□□□ -0.95
LIG1-209ENST00000596104 FETUBQ9UGM5 382 aa9.11□□□□□ -0.95
LIG1-209ENST00000596104 CAMK2AQ9UQM7 478 aa9.11□□□□□ -0.95
LIG1-209ENST00000596104 ASB4Q9Y574 426 aa9.11□□□□□ -0.95
LIG1-209ENST00000596104 NPFFR2Q9Y5X5 522 aa9.11□□□□□ -0.95
LIG1-209ENST00000596104 JMJD1CQ15652 2540 aa9.11□□□□□ -0.95
LIG1-209ENST00000596104 A0A0A6YYD5 115 aa9.1□□□□□ -0.95
LIG1-209ENST00000596104 C2orf92A0A1B0GVN3 265 aa9.1□□□□□ -0.95
LIG1-209ENST00000596104 A0A1W2PS29 197 aa9.1□□□□□ -0.95
LIG1-209ENST00000596104 GLOD5A6NK44 160 aa9.1□□□□□ -0.95
LIG1-209ENST00000596104 K7EPI3 171 aa9.1□□□□□ -0.95
LIG1-209ENST00000596104 EEDO75530 441 aaKnown RBP9.1□□□□□ -0.95
LIG1-209ENST00000596104 SLC35E2BP0CK96 405 aa9.1□□□□□ -0.95
LIG1-209ENST00000596104 SLC35E2P0CK97 266 aa9.1□□□□□ -0.95
LIG1-209ENST00000596104 STMN1P16949 149 aa9.1□□□□□ -0.95
LIG1-209ENST00000596104 TLX1P31314 330 aaPredicted RBP9.1□□□□□ -0.95
LIG1-209ENST00000596104 SSTR4P31391 388 aa9.1□□□□□ -0.95
LIG1-209ENST00000596104 BUD31P41223 144 aaPredicted RBP9.1□□□□□ -0.95
LIG1-209ENST00000596104 PIK3CBP42338 1070 aa9.1□□□□□ -0.95
LIG1-209ENST00000596104 CASP3P42574 277 aa9.1□□□□□ -0.95
LIG1-209ENST00000596104 SLCO1A2P46721 670 aa9.1□□□□□ -0.95
LIG1-209ENST00000596104 RPL21P46778 160 aaKnown RBP9.1□□□□□ -0.95
LIG1-209ENST00000596104 ARFIP1P53367 373 aa9.1□□□□□ -0.95
LIG1-209ENST00000596104 NAGLUP54802 743 aa9.1□□□□□ -0.95
LIG1-209ENST00000596104 FOXF2Q12947 444 aa9.1□□□□□ -0.95
LIG1-209ENST00000596104 DDX39BQ13838 428 aaKnown RBP9.1□□□□□ -0.95
LIG1-209ENST00000596104 POU4F3Q15319 338 aa9.1□□□□□ -0.95
LIG1-209ENST00000596104 WIPI1Q5MNZ9 446 aaPredicted RBP9.1□□□□□ -0.95
LIG1-209ENST00000596104 TIGD3Q6B0B8 471 aa9.1□□□□□ -0.95
LIG1-209ENST00000596104 GRHL2Q6ISB3 625 aa9.1□□□□□ -0.95
LIG1-209ENST00000596104 PRIMA1Q86XR5 153 aa9.1□□□□□ -0.95
LIG1-209ENST00000596104 ZNF615Q8N8J6 731 aa9.1□□□□□ -0.95
LIG1-209ENST00000596104 ZPLD1Q8TCW7 415 aa9.1□□□□□ -0.95
LIG1-209ENST00000596104 UBTD2Q8WUN7 234 aa9.1□□□□□ -0.95
LIG1-209ENST00000596104 SMPDL3BQ92485 455 aa9.1□□□□□ -0.95
LIG1-209ENST00000596104 EXT2Q93063 718 aa9.1□□□□□ -0.95
LIG1-209ENST00000596104 UCN3Q969E3 161 aa9.1□□□□□ -0.95
LIG1-209ENST00000596104 ABTB1Q969K4 478 aaPredicted RBP9.1□□□□□ -0.95
LIG1-209ENST00000596104 ADIPOR1Q96A54 375 aa9.1□□□□□ -0.95
LIG1-209ENST00000596104 TMEM41AQ96HV5 264 aa9.1□□□□□ -0.95
LIG1-209ENST00000596104 COX4I2Q96KJ9 171 aa9.1□□□□□ -0.95
LIG1-209ENST00000596104 ATOH8Q96SQ7 321 aa9.1□□□□□ -0.95
LIG1-209ENST00000596104 RBBP8Q99708 897 aa9.1□□□□□ -0.95
LIG1-209ENST00000596104 YIPF4Q9BSR8 244 aa9.1□□□□□ -0.95
LIG1-209ENST00000596104 DDX31Q9H8H2 851 aaKnown RBP9.1□□□□□ -0.95
LIG1-209ENST00000596104 CXorf21Q9HAI6 301 aa9.1□□□□□ -0.95
LIG1-209ENST00000596104 TEX10Q9NXF1 929 aaPredicted RBP9.1□□□□□ -0.95
LIG1-209ENST00000596104 NUDT4Q9NZJ9 180 aa9.1□□□□□ -0.95
LIG1-209ENST00000596104 ADGRE2Q9UHX3 823 aa9.1□□□□□ -0.95
LIG1-209ENST00000596104 RNF112Q9ULX5 631 aa9.1□□□□□ -0.95
LIG1-209ENST00000596104 TSC22D4Q9Y3Q8 395 aa9.1□□□□□ -0.95
LIG1-209ENST00000596104 EML6Q6ZMW3 1958 aa9.1□□□□□ -0.95
LIG1-209ENST00000596104 CAPN14A8MX76 684 aa9.09□□□□□ -0.95
LIG1-209ENST00000596104 AIFM1O95831 613 aa9.09□□□□□ -0.95
LIG1-209ENST00000596104 LY6G6DO95868 133 aa9.09□□□□□ -0.95
LIG1-209ENST00000596104 S100BP04271 92 aaPredicted RBP9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms