RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 TCRBV16S1A1N1A0A5B0 115 aa14.31□□□□□ -0.12
SS18-215ENST00000580642 TTC36A6NLP5 189 aa14.31□□□□□ -0.12
SS18-215ENST00000580642 DUXAA6NLW8 204 aa14.31□□□□□ -0.12
SS18-215ENST00000580642 FAM220BPB1ANY3 271 aa14.31□□□□□ -0.12
SS18-215ENST00000580642 ASNA1O43681 348 aa14.31□□□□□ -0.12
SS18-215ENST00000580642 LDB3O75112 727 aa14.31□□□□□ -0.12
SS18-215ENST00000580642 AGR2O95994 175 aa14.31□□□□□ -0.12
SS18-215ENST00000580642 ZGLP1P0C6A0 271 aa14.31□□□□□ -0.12
SS18-215ENST00000580642 CCNYL3P0C7X3 344 aa14.31□□□□□ -0.12
SS18-215ENST00000580642 GSK3BP49841 420 aa14.31□□□□□ -0.12
SS18-215ENST00000580642 CDK9P50750 372 aaKnown RBP14.31□□□□□ -0.12
SS18-215ENST00000580642 NOVA1P51513 510 aaKnown RBP14.31□□□□□ -0.12
SS18-215ENST00000580642 MTPNP58546 118 aa14.31□□□□□ -0.12
SS18-215ENST00000580642 VEZF1Q14119 521 aa14.31□□□□□ -0.12
SS18-215ENST00000580642 RGNQ15493 299 aa14.31□□□□□ -0.12
SS18-215ENST00000580642 PRICKLE4Q2TBC4 344 aa14.31□□□□□ -0.12
SS18-215ENST00000580642 GTDC1Q4AE62 458 aa14.31□□□□□ -0.12
SS18-215ENST00000580642 PROSER1Q86XN7 944 aa14.31□□□□□ -0.12
SS18-215ENST00000580642 DTWD1Q8N5C7 304 aa14.31□□□□□ -0.12
SS18-215ENST00000580642 GOLM1Q8NBJ4 401 aa14.31□□□□□ -0.12
SS18-215ENST00000580642 OR2T12Q8NG77 320 aa14.31□□□□□ -0.12
SS18-215ENST00000580642 OR52E4Q8NGH9 312 aa14.31□□□□□ -0.12
SS18-215ENST00000580642 OR9A2Q8NGT5 310 aa14.31□□□□□ -0.12
SS18-215ENST00000580642 ZDHHC19Q8WVZ1 309 aaPredicted RBP14.31□□□□□ -0.12
SS18-215ENST00000580642 NACC2Q96BF6 587 aa14.31□□□□□ -0.12
SS18-215ENST00000580642 FAM120BQ96EK7 910 aaKnown RBP14.31□□□□□ -0.12
SS18-215ENST00000580642 ZNF583Q96ND8 569 aa14.31□□□□□ -0.12
SS18-215ENST00000580642 PTCHD1Q96NR3 888 aa14.31□□□□□ -0.12
SS18-215ENST00000580642 KCTD14Q9BQ13 255 aaPredicted RBP14.31□□□□□ -0.12
SS18-215ENST00000580642 TRIM15Q9C019 465 aa14.31□□□□□ -0.12
SS18-215ENST00000580642 TMEM38AQ9H6F2 299 aa14.31□□□□□ -0.12
SS18-215ENST00000580642 ZCCHC3Q9NUD5 404 aaKnown RBP14.31□□□□□ -0.12
SS18-215ENST00000580642 GIN1Q9NXP7 522 aa14.31□□□□□ -0.12
SS18-215ENST00000580642 PISDQ9UG56 409 aa14.31□□□□□ -0.12
SS18-215ENST00000580642 RAPGEFL1Q9UHV5 662 aa14.31□□□□□ -0.12
SS18-215ENST00000580642 GPN3Q9UHW5 284 aaPredicted RBP14.31□□□□□ -0.12
SS18-215ENST00000580642 C19orf53Q9UNZ5 99 aaPredicted RBP14.31□□□□□ -0.12
SS18-215ENST00000580642 CLDN16Q9Y5I7 305 aa14.31□□□□□ -0.12
SS18-215ENST00000580642 SNX8Q9Y5X2 465 aa14.31□□□□□ -0.12
SS18-215ENST00000580642 B3GALT1Q9Y5Z6 326 aa14.31□□□□□ -0.12
SS18-215ENST00000580642 RIF1Q5UIP0 2472 aaKnown RBP14.31□□□□□ -0.12
SS18-215ENST00000580642 H0YHG0 523 aa14.3□□□□□ -0.12
SS18-215ENST00000580642 COQ9O75208 318 aa14.3□□□□□ -0.12
SS18-215ENST00000580642 GMNNO75496 209 aa14.3□□□□□ -0.12
SS18-215ENST00000580642 STK17BO94768 372 aa14.3□□□□□ -0.12
SS18-215ENST00000580642 DLGAP3O95886 979 aa14.3□□□□□ -0.12
SS18-215ENST00000580642 RECKO95980 971 aa14.3□□□□□ -0.12
SS18-215ENST00000580642 RAB40ALP0C0E4 278 aa14.3□□□□□ -0.12
SS18-215ENST00000580642 C8orf89P0DMQ9 161 aa14.3□□□□□ -0.12
SS18-215ENST00000580642 HOXB6P17509 224 aaKnown RBP14.3□□□□□ -0.12
SS18-215ENST00000580642 NT5EP21589 574 aa14.3□□□□□ -0.12
SS18-215ENST00000580642 SOAT1P35610 550 aa14.3□□□□□ -0.12
SS18-215ENST00000580642 PRIM2P49643 509 aa14.3□□□□□ -0.12
SS18-215ENST00000580642 GZMMP51124 257 aa14.3□□□□□ -0.12
SS18-215ENST00000580642 MVDP53602 400 aa14.3□□□□□ -0.12
SS18-215ENST00000580642 TARDBPQ13148 414 aaKnown RBP eCLIP14.3□□□□□ -0.12
SS18-215ENST00000580642 TP53BP2Q13625 1128 aa14.3□□□□□ -0.12
SS18-215ENST00000580642 ELAVL1Q15717 326 aaKnown RBP14.3□□□□□ -0.12
SS18-215ENST00000580642 NKG7Q16617 165 aa14.3□□□□□ -0.12
SS18-215ENST00000580642 MINDY4Q4G0A6 757 aa14.3□□□□□ -0.12
SS18-215ENST00000580642 C6orf15Q6UXA7 325 aaPredicted RBP14.3□□□□□ -0.12
SS18-215ENST00000580642 TMPRSS7Q7RTY8 843 aa14.3□□□□□ -0.12
SS18-215ENST00000580642 C6orf120Q7Z4R8 191 aa14.3□□□□□ -0.12
SS18-215ENST00000580642 HPS6Q86YV9 775 aa14.3□□□□□ -0.12
SS18-215ENST00000580642 OR4N5Q8IXE1 308 aa14.3□□□□□ -0.12
SS18-215ENST00000580642 GALNT12Q8IXK2 581 aa14.3□□□□□ -0.12
SS18-215ENST00000580642 ESX1Q8N693 406 aa14.3□□□□□ -0.12
SS18-215ENST00000580642 FAM13CQ8NE31 585 aa14.3□□□□□ -0.12
SS18-215ENST00000580642 OR7G1Q8NGA0 311 aa14.3□□□□□ -0.12
SS18-215ENST00000580642 JADE3Q92613 823 aa14.3□□□□□ -0.12
SS18-215ENST00000580642 RIT1Q92963 219 aa14.3□□□□□ -0.12
SS18-215ENST00000580642 ART5Q96L15 291 aa14.3□□□□□ -0.12
SS18-215ENST00000580642 MS4A4EQ96PG1 132 aa14.3□□□□□ -0.12
SS18-215ENST00000580642 CXorf21Q9HAI6 301 aa14.3□□□□□ -0.12
SS18-215ENST00000580642 ADAP2Q9NPF8 381 aa14.3□□□□□ -0.12
SS18-215ENST00000580642 DDX18Q9NVP1 670 aaKnown RBP14.3□□□□□ -0.12
SS18-215ENST00000580642 ACTR3BQ9P1U1 418 aa14.3□□□□□ -0.12
SS18-215ENST00000580642 ZNF639Q9UID6 485 aa14.3□□□□□ -0.12
SS18-215ENST00000580642 MAGEL2Q9UJ55 1249 aa14.3□□□□□ -0.12
SS18-215ENST00000580642 PADI1Q9ULC6 663 aa14.3□□□□□ -0.12
SS18-215ENST00000580642 POMPQ9Y244 141 aa14.3□□□□□ -0.12
SS18-215ENST00000580642 ZFHX2Q9C0A1 2572 aaPredicted RBP14.3□□□□□ -0.12
SS18-215ENST00000580642 GVINP1Q7Z2Y8 2422 aa14.29□□□□□ -0.12
SS18-215ENST00000580642 ELOVL7A1L3X0 281 aa14.29□□□□□ -0.12
SS18-215ENST00000580642 IQCJ-SCHIP1C9J366 451 aaPredicted RBP14.29□□□□□ -0.12
SS18-215ENST00000580642 UPK1AO00322 258 aa14.29□□□□□ -0.12
SS18-215ENST00000580642 ACOT8O14734 319 aa14.29□□□□□ -0.12
SS18-215ENST00000580642 KCNK5O95279 499 aa14.29□□□□□ -0.12
SS18-215ENST00000580642 PSMG1O95456 288 aa14.29□□□□□ -0.12
SS18-215ENST00000580642 IGHEP01854 428 aa14.29□□□□□ -0.12
SS18-215ENST00000580642 ZNF28P17035 718 aa14.29□□□□□ -0.12
SS18-215ENST00000580642 ITIH1P19827 911 aa14.29□□□□□ -0.12
SS18-215ENST00000580642 EFNA1P20827 205 aaPredicted RBP14.29□□□□□ -0.12
SS18-215ENST00000580642 ETV5P41161 510 aa14.29□□□□□ -0.12
SS18-215ENST00000580642 ACTR3P61158 418 aa14.29□□□□□ -0.12
SS18-215ENST00000580642 BTG2P78543 158 aa14.29□□□□□ -0.12
SS18-215ENST00000580642 DUSP2Q05923 314 aa14.29□□□□□ -0.12
SS18-215ENST00000580642 MGAT2Q10469 447 aa14.29□□□□□ -0.12
SS18-215ENST00000580642 GNA13Q14344 377 aa14.29□□□□□ -0.12
SS18-215ENST00000580642 ZNF630Q2M218 657 aaPredicted RBP14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms