RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 PTGDR2Q9Y5Y4 395 aa12.07□□□□□ -0.48
CLK3-224ENST00000568605 NINQ8N4C6 2090 aa12.07□□□□□ -0.48
CLK3-224ENST00000568605 GTF3C1Q12789 2109 aa12.07□□□□□ -0.48
CLK3-224ENST00000568605 A8MVJ9 347 aa12.06□□□□□ -0.48
CLK3-224ENST00000568605 LSM1O15116 133 aaKnown RBP12.06□□□□□ -0.48
CLK3-224ENST00000568605 MAN1A2O60476 641 aa12.06□□□□□ -0.48
CLK3-224ENST00000568605 SLC25A12O75746 678 aa12.06□□□□□ -0.48
CLK3-224ENST00000568605 OR2J2O76002 312 aa12.06□□□□□ -0.48
CLK3-224ENST00000568605 SLITRK5O94991 958 aa12.06□□□□□ -0.48
CLK3-224ENST00000568605 RASAL1O95294 804 aa12.06□□□□□ -0.48
CLK3-224ENST00000568605 CRYABP02511 175 aaKnown RBP12.06□□□□□ -0.48
CLK3-224ENST00000568605 FREM3P0C091 2139 aa12.06□□□□□ -0.48
CLK3-224ENST00000568605 H2AFXP16104 143 aaPredicted RBP12.06□□□□□ -0.48
CLK3-224ENST00000568605 DDCP20711 480 aa12.06□□□□□ -0.48
CLK3-224ENST00000568605 BGNP21810 368 aa12.06□□□□□ -0.48
CLK3-224ENST00000568605 CD96P40200 585 aa12.06□□□□□ -0.48
CLK3-224ENST00000568605 SLC1A6P48664 564 aa12.06□□□□□ -0.48
CLK3-224ENST00000568605 HK2P52789 917 aa12.06□□□□□ -0.48
CLK3-224ENST00000568605 C2orf80Q0P641 193 aa12.06□□□□□ -0.48
CLK3-224ENST00000568605 MAD2L1Q13257 205 aaPredicted RBP12.06□□□□□ -0.48
CLK3-224ENST00000568605 STX3Q13277 289 aa12.06□□□□□ -0.48
CLK3-224ENST00000568605 ATG16L1Q676U5 607 aa12.06□□□□□ -0.48
CLK3-224ENST00000568605 OPN5Q6U736 354 aa12.06□□□□□ -0.48
CLK3-224ENST00000568605 DND1Q8IYX4 353 aaKnown RBP12.06□□□□□ -0.48
CLK3-224ENST00000568605 CISD2Q8N5K1 135 aaKnown RBP12.06□□□□□ -0.48
CLK3-224ENST00000568605 AMER2Q8N7J2 671 aa12.06□□□□□ -0.48
CLK3-224ENST00000568605 GALNT11Q8NCW6 608 aa12.06□□□□□ -0.48
CLK3-224ENST00000568605 MDS2Q8NDY4 140 aa12.06□□□□□ -0.48
CLK3-224ENST00000568605 OR7G1Q8NGA0 311 aa12.06□□□□□ -0.48
CLK3-224ENST00000568605 MGARPQ8TDB4 240 aa12.06□□□□□ -0.48
CLK3-224ENST00000568605 SNRNP40Q96DI7 357 aaKnown RBP12.06□□□□□ -0.48
CLK3-224ENST00000568605 C19orf60Q96EN9 201 aa12.06□□□□□ -0.48
CLK3-224ENST00000568605 CNRIP1Q96F85 164 aaPredicted RBP12.06□□□□□ -0.48
CLK3-224ENST00000568605 ATP6V1G3Q96LB4 118 aa12.06□□□□□ -0.48
CLK3-224ENST00000568605 SIGLEC12Q96PQ1 595 aa12.06□□□□□ -0.48
CLK3-224ENST00000568605 BBS4Q96RK4 519 aa12.06□□□□□ -0.48
CLK3-224ENST00000568605 TUBB1Q9H4B7 451 aa12.06□□□□□ -0.48
CLK3-224ENST00000568605 TIMMDC1Q9NPL8 285 aa12.06□□□□□ -0.48
CLK3-224ENST00000568605 HPF1Q9NWY4 346 aa12.06□□□□□ -0.48
CLK3-224ENST00000568605 ANKRD10Q9NXR5 420 aa12.06□□□□□ -0.48
CLK3-224ENST00000568605 HEY2Q9UBP5 337 aa12.06□□□□□ -0.48
CLK3-224ENST00000568605 CCL27Q9Y4X3 112 aa12.06□□□□□ -0.48
CLK3-224ENST00000568605 NUP214P35658 2090 aaPredicted RBP12.06□□□□□ -0.48
CLK3-224ENST00000568605 WWP2O00308 870 aa12.05□□□□□ -0.48
CLK3-224ENST00000568605 LYPLA1O75608 230 aaPredicted RBP12.05□□□□□ -0.48
CLK3-224ENST00000568605 WISP1O95388 367 aa12.05□□□□□ -0.48
CLK3-224ENST00000568605 MPIP34949 423 aa12.05□□□□□ -0.48
CLK3-224ENST00000568605 HPCAL1P37235 193 aa12.05□□□□□ -0.48
CLK3-224ENST00000568605 RPL3P39023 403 aaKnown RBP12.05□□□□□ -0.48
CLK3-224ENST00000568605 FEN1P39748 380 aaKnown RBP12.05□□□□□ -0.48
CLK3-224ENST00000568605 TMED10P49755 219 aaKnown RBP12.05□□□□□ -0.48
CLK3-224ENST00000568605 RPL14P50914 215 aaKnown RBP12.05□□□□□ -0.48
CLK3-224ENST00000568605 MPP2Q14168 576 aa12.05□□□□□ -0.48
CLK3-224ENST00000568605 ELOAQ14241 798 aaKnown RBP12.05□□□□□ -0.48
CLK3-224ENST00000568605 MPEG1Q2M385 716 aa12.05□□□□□ -0.48
CLK3-224ENST00000568605 PRR30Q53SZ7 412 aaPredicted RBP12.05□□□□□ -0.48
CLK3-224ENST00000568605 XKR7Q5GH72 579 aa12.05□□□□□ -0.48
CLK3-224ENST00000568605 FAM71E1Q6IPT2 247 aa12.05□□□□□ -0.48
CLK3-224ENST00000568605 DGAT2L6Q6ZPD8 337 aa12.05□□□□□ -0.48
CLK3-224ENST00000568605 C9orf40Q8IXQ3 194 aa12.05□□□□□ -0.48
CLK3-224ENST00000568605 FAM9CQ8IZT9 166 aa12.05□□□□□ -0.48
CLK3-224ENST00000568605 TAGAPQ8N103 731 aa12.05□□□□□ -0.48
CLK3-224ENST00000568605 MMP21Q8N119 569 aa12.05□□□□□ -0.48
CLK3-224ENST00000568605 SLC15A4Q8N697 577 aa12.05□□□□□ -0.48
CLK3-224ENST00000568605 ZNF781Q8N8C0 355 aa12.05□□□□□ -0.48
CLK3-224ENST00000568605 ZNF321PQ8N8H1 164 aa12.05□□□□□ -0.48
CLK3-224ENST00000568605 OR2T11Q8NH01 316 aa12.05□□□□□ -0.48
CLK3-224ENST00000568605 ZNF675Q8TD23 568 aa12.05□□□□□ -0.48
CLK3-224ENST00000568605 GRHL3Q8TE85 626 aa12.05□□□□□ -0.48
CLK3-224ENST00000568605 UCN3Q969E3 161 aa12.05□□□□□ -0.48
CLK3-224ENST00000568605 ERP27Q96DN0 273 aa12.05□□□□□ -0.48
CLK3-224ENST00000568605 SCMH1Q96GD3 660 aa12.05□□□□□ -0.48
CLK3-224ENST00000568605 ZNF764Q96H86 408 aaPredicted RBP12.05□□□□□ -0.48
CLK3-224ENST00000568605 FCRL1Q96LA6 429 aa12.05□□□□□ -0.48
CLK3-224ENST00000568605 RASL10BQ96S79 203 aa12.05□□□□□ -0.48
CLK3-224ENST00000568605 TRIM45Q9H8W5 580 aaPredicted RBP12.05□□□□□ -0.48
CLK3-224ENST00000568605 SLC35C2Q9NQQ7 365 aa12.05□□□□□ -0.48
CLK3-224ENST00000568605 OLAHQ9NV23 265 aa12.05□□□□□ -0.48
CLK3-224ENST00000568605 ASF1BQ9NVP2 202 aa12.05□□□□□ -0.48
CLK3-224ENST00000568605 ZDHHC2Q9UIJ5 367 aa12.05□□□□□ -0.48
CLK3-224ENST00000568605 NCKAP5O14513 1909 aa12.05□□□□□ -0.48
CLK3-224ENST00000568605 UBR5O95071 2799 aaPredicted RBP12.04□□□□□ -0.48
CLK3-224ENST00000568605 HIVEP3Q5T1R4 2406 aa12.04□□□□□ -0.48
CLK3-224ENST00000568605 C2orf92A0A1B0GVN3 265 aa12.04□□□□□ -0.48
CLK3-224ENST00000568605 WASHC1A8K0Z3 465 aa12.04□□□□□ -0.48
CLK3-224ENST00000568605 CAPN14A8MX76 684 aa12.04□□□□□ -0.48
CLK3-224ENST00000568605 HMGB1P1B2RPK0 211 aaPredicted RBP12.04□□□□□ -0.48
CLK3-224ENST00000568605 PRKNO60260 465 aaPredicted RBP12.04□□□□□ -0.48
CLK3-224ENST00000568605 NME2P1O60361 137 aa12.04□□□□□ -0.48
CLK3-224ENST00000568605 BCAS2O75934 225 aaPredicted RBP12.04□□□□□ -0.48
CLK3-224ENST00000568605 NEURL1O76050 574 aa12.04□□□□□ -0.48
CLK3-224ENST00000568605 SP1P08047 785 aa12.04□□□□□ -0.48
CLK3-224ENST00000568605 SDC1P18827 310 aa12.04□□□□□ -0.48
CLK3-224ENST00000568605 NME2P22392 152 aa12.04□□□□□ -0.48
CLK3-224ENST00000568605 SSTR4P31391 388 aa12.04□□□□□ -0.48
CLK3-224ENST00000568605 ARRB2P32121 409 aa12.04□□□□□ -0.48
CLK3-224ENST00000568605 NRG3P56975 720 aa12.04□□□□□ -0.48
CLK3-224ENST00000568605 SLC37A1P57057 533 aa12.04□□□□□ -0.48
CLK3-224ENST00000568605 BST1Q10588 318 aa12.04□□□□□ -0.48
CLK3-224ENST00000568605 FUT7Q11130 342 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms