RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 NPRL2Q8WTW4 380 aa3.86□□□□□ -1.79
LINC00560-201ENST00000564593 NABP1Q96AH0 204 aa3.86□□□□□ -1.79
LINC00560-201ENST00000564593 RCHY1Q96PM5 261 aa3.86□□□□□ -1.79
LINC00560-201ENST00000564593 FAM111AQ96PZ2 611 aa3.86□□□□□ -1.79
LINC00560-201ENST00000564593 FTHL17Q9BXU8 183 aa3.86□□□□□ -1.79
LINC00560-201ENST00000564593 SP140LQ9H930 580 aa3.86□□□□□ -1.79
LINC00560-201ENST00000564593 THYN1Q9P016 225 aa3.86□□□□□ -1.79
LINC00560-201ENST00000564593 AUP1Q9Y679 476 aa3.86□□□□□ -1.79
LINC00560-201ENST00000564593 MYOM3Q5VTT5 1437 aa3.86□□□□□ -1.79
LINC00560-201ENST00000564593 NPC1L1Q9UHC9 1359 aa3.86□□□□□ -1.79
LINC00560-201ENST00000564593 ADGBQ8N7X0 1667 aa3.86□□□□□ -1.79
LINC00560-201ENST00000564593 GRIN2BQ13224 1484 aa3.86□□□□□ -1.79
LINC00560-201ENST00000564593 IGLV4-3A0A075B6K6 122 aa3.85□□□□□ -1.79
LINC00560-201ENST00000564593 TRGV8A0A0C4DH27 118 aa3.85□□□□□ -1.79
LINC00560-201ENST00000564593 A0A0J9YWU9 116 aa3.85□□□□□ -1.79
LINC00560-201ENST00000564593 HFM1A2PYH4 1435 aa3.85□□□□□ -1.79
LINC00560-201ENST00000564593 TMEM89A2RUT3 159 aa3.85□□□□□ -1.79
LINC00560-201ENST00000564593 NTN3O00634 580 aaPredicted RBP3.85□□□□□ -1.79
LINC00560-201ENST00000564593 SH2D1BO14796 132 aa3.85□□□□□ -1.79
LINC00560-201ENST00000564593 DUSP11O75319 330 aaKnown RBP3.85□□□□□ -1.79
LINC00560-201ENST00000564593 SORBS2O94875 1100 aaKnown RBP3.85□□□□□ -1.79
LINC00560-201ENST00000564593 OR6B1O95007 311 aa3.85□□□□□ -1.79
LINC00560-201ENST00000564593 POLR1AO95602 1720 aaPredicted RBP3.85□□□□□ -1.79
LINC00560-201ENST00000564593 FCER2P06734 321 aa3.85□□□□□ -1.79
LINC00560-201ENST00000564593 PROS1P07225 676 aa3.85□□□□□ -1.79
LINC00560-201ENST00000564593 ZNF883P0CG24 379 aa3.85□□□□□ -1.79
LINC00560-201ENST00000564593 AKT2P31751 481 aa3.85□□□□□ -1.79
LINC00560-201ENST00000564593 ZNF131P52739 623 aa3.85□□□□□ -1.79
LINC00560-201ENST00000564593 BPIFB3P59826 476 aa3.85□□□□□ -1.79
LINC00560-201ENST00000564593 RPS4XP62701 263 aaKnown RBP3.85□□□□□ -1.79
LINC00560-201ENST00000564593 KLF5Q13887 457 aaPredicted RBP3.85□□□□□ -1.79
LINC00560-201ENST00000564593 BTG3Q14201 252 aaPredicted RBP3.85□□□□□ -1.79
LINC00560-201ENST00000564593 FHOD3Q2V2M9 1422 aa3.85□□□□□ -1.79
LINC00560-201ENST00000564593 MUC21Q5SSG8 566 aa3.85□□□□□ -1.79
LINC00560-201ENST00000564593 ASRGL1Q7L266 308 aa3.85□□□□□ -1.79
LINC00560-201ENST00000564593 SLC22A16Q86VW1 577 aa3.85□□□□□ -1.79
LINC00560-201ENST00000564593 RNF130Q86XS8 419 aa3.85□□□□□ -1.79
LINC00560-201ENST00000564593 LRRC17Q8N6Y2 441 aa3.85□□□□□ -1.79
LINC00560-201ENST00000564593 RDH11Q8TC12 318 aa3.85□□□□□ -1.79
LINC00560-201ENST00000564593 MIPOL1Q8TD10 442 aa3.85□□□□□ -1.79
LINC00560-201ENST00000564593 CHPT1Q8WUD6 406 aa3.85□□□□□ -1.79
LINC00560-201ENST00000564593 C16orf58Q96GQ5 468 aa3.85□□□□□ -1.79
LINC00560-201ENST00000564593 CBWD1Q9BRT8 395 aa3.85□□□□□ -1.79
LINC00560-201ENST00000564593 CHCHD5Q9BSY4 110 aa3.85□□□□□ -1.79
LINC00560-201ENST00000564593 UACAQ9BZF9 1416 aa3.85□□□□□ -1.79
LINC00560-201ENST00000564593 TRIM15Q9C019 465 aa3.85□□□□□ -1.79
LINC00560-201ENST00000564593 KRT23Q9C075 422 aa3.85□□□□□ -1.79
LINC00560-201ENST00000564593 NACA2Q9H009 215 aa3.85□□□□□ -1.79
LINC00560-201ENST00000564593 HSD3B7Q9H2F3 369 aa3.85□□□□□ -1.79
LINC00560-201ENST00000564593 MAPKBP1O60336 1514 aa3.85□□□□□ -1.79
LINC00560-201ENST00000564593 UGGT2Q9NYU1 1516 aa3.85□□□□□ -1.79
LINC00560-201ENST00000564593 IFT140Q96RY7 1462 aa3.85□□□□□ -1.79
LINC00560-201ENST00000564593 LRRIQ1Q96JM4 1722 aa3.85□□□□□ -1.79
LINC00560-201ENST00000564593 MIA2Q96PC5 1412 aa3.85□□□□□ -1.79
LINC00560-201ENST00000564593 IGKV3D-15A0A087WSY6 115 aa3.85□□□□□ -1.79
LINC00560-201ENST00000564593 EPM2AB3EWF7 344 aa3.85□□□□□ -1.79
LINC00560-201ENST00000564593 SSX5O60225 188 aa3.85□□□□□ -1.79
LINC00560-201ENST00000564593 TSPAN2O60636 221 aa3.85□□□□□ -1.79
LINC00560-201ENST00000564593 TGFAP01135 160 aa3.85□□□□□ -1.79
LINC00560-201ENST00000564593 HSPA1LP34931 641 aa3.85□□□□□ -1.79
LINC00560-201ENST00000564593 NUMBP49757 651 aa3.85□□□□□ -1.79
LINC00560-201ENST00000564593 RIDAP52758 137 aaKnown RBP3.85□□□□□ -1.79
LINC00560-201ENST00000564593 CLPPQ16740 277 aaPredicted RBP3.85□□□□□ -1.79
LINC00560-201ENST00000564593 STEAP1BQ6NZ63 245 aa3.85□□□□□ -1.79
LINC00560-201ENST00000564593 ADGRD2Q7Z7M1 963 aa3.85□□□□□ -1.79
LINC00560-201ENST00000564593 YRDCQ86U90 279 aaKnown RBP3.85□□□□□ -1.79
LINC00560-201ENST00000564593 COLGALT1Q8NBJ5 622 aa3.85□□□□□ -1.79
LINC00560-201ENST00000564593 CHDHQ8NE62 594 aaPredicted RBP3.85□□□□□ -1.79
LINC00560-201ENST00000564593 OR1K1Q8NGR3 316 aa3.85□□□□□ -1.79
LINC00560-201ENST00000564593 OR1B1Q8NGR6 318 aa3.85□□□□□ -1.79
LINC00560-201ENST00000564593 FBXO25Q8TCJ0 367 aa3.85□□□□□ -1.79
LINC00560-201ENST00000564593 U2AF1L4Q8WU68 220 aaKnown RBP3.85□□□□□ -1.79
LINC00560-201ENST00000564593 P3H4Q92791 437 aa3.85□□□□□ -1.79
LINC00560-201ENST00000564593 PNPLA2Q96AD5 504 aa3.85□□□□□ -1.79
LINC00560-201ENST00000564593 TMEM45BQ96B21 275 aa3.85□□□□□ -1.79
LINC00560-201ENST00000564593 VGLL1Q99990 258 aa3.85□□□□□ -1.79
LINC00560-201ENST00000564593 ATG10Q9H0Y0 220 aa3.85□□□□□ -1.79
LINC00560-201ENST00000564593 DCTPP1Q9H773 170 aa3.85□□□□□ -1.79
LINC00560-201ENST00000564593 NT5DC2Q9H857 520 aa3.85□□□□□ -1.79
LINC00560-201ENST00000564593 EIF3KQ9UBQ5 218 aaKnown RBP3.85□□□□□ -1.79
LINC00560-201ENST00000564593 CLIP2Q9UDT6 1046 aa3.85□□□□□ -1.79
LINC00560-201ENST00000564593 PLA2G4CQ9UP65 541 aa3.85□□□□□ -1.79
LINC00560-201ENST00000564593 SLC6A5Q9Y345 797 aa3.85□□□□□ -1.79
LINC00560-201ENST00000564593 FER1L5A0AVI2 2057 aa3.85□□□□□ -1.79
LINC00560-201ENST00000564593 TDRD15B5MCY1 1934 aaKnown RBP3.84□□□□□ -1.79
LINC00560-201ENST00000564593 WDR62O43379 1518 aa3.84□□□□□ -1.79
LINC00560-201ENST00000564593 E9PQ18 207 aa3.84□□□□□ -1.8
LINC00560-201ENST00000564593 K7EQG2 157 aa3.84□□□□□ -1.8
LINC00560-201ENST00000564593 ARPC1BO15143 372 aaKnown RBP3.84□□□□□ -1.8
LINC00560-201ENST00000564593 CCNA2P20248 432 aa3.84□□□□□ -1.8
LINC00560-201ENST00000564593 PRDX6P30041 224 aa3.84□□□□□ -1.8
LINC00560-201ENST00000564593 ATP4BP51164 291 aa3.84□□□□□ -1.8
LINC00560-201ENST00000564593 NME3Q13232 169 aa3.84□□□□□ -1.8
LINC00560-201ENST00000564593 EMC2Q15006 297 aa3.84□□□□□ -1.8
LINC00560-201ENST00000564593 GSG1LQ6UXU4 331 aa3.84□□□□□ -1.8
LINC00560-201ENST00000564593 CATSPER3Q86XQ3 398 aa3.84□□□□□ -1.8
LINC00560-201ENST00000564593 KRTAP7-1Q8IUC3 87 aa3.84□□□□□ -1.8
LINC00560-201ENST00000564593 ZNF781Q8N8C0 355 aa3.84□□□□□ -1.8
LINC00560-201ENST00000564593 OR4F5Q8NH21 305 aa3.84□□□□□ -1.8
LINC00560-201ENST00000564593 TMEM37Q8WXS4 190 aa3.84□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms