RNA–Protein interactions for RNA: ENST00000559339.1

SNX1-205, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 101 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-205ENST00000559339 PCDHA9Q9Y5H5 950 aa4.06□□□□□ -1.76
SNX1-205ENST00000559339 CLDN16Q9Y5I7 305 aa4.06□□□□□ -1.76
SNX1-205ENST00000559339 PRRC2CQ9Y520 2896 aaKnown RBP4.05□□□□□ -1.76
SNX1-205ENST00000559339 PCSK5Q92824 1860 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 TRGV8A0A0C4DH27 118 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 TMEM200CA6NKL6 621 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 WASHC1A8K0Z3 465 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 TMEM114B3SHH9 223 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 NPIPA5E9PKD4 350 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 TGFBR3LH3BV60 316 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 PRRG2O14669 202 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 TP53I11O14683 189 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 AZIN1O14977 448 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 TM9SF1O15321 606 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 LRRTM2O43300 516 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 CTIFO43310 598 aaKnown RBP4.05□□□□□ -1.76
SNX1-205ENST00000559339 PEX1O43933 1283 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 NPHS1O60500 1241 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 CDC40O60508 579 aaKnown RBP eCLIP4.05□□□□□ -1.76
SNX1-205ENST00000559339 SLC19A2O60779 497 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 SPAG7O75391 227 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 SEC22BO75396 215 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 SLITRK5O94991 958 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 OR6B1O95007 311 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 ZWINTO95229 277 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 ZIC2O95409 532 aaPredicted RBP4.05□□□□□ -1.76
SNX1-205ENST00000559339 IGKV3-11P04433 115 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 ESRRAP11474 423 aaPredicted RBP4.05□□□□□ -1.76
SNX1-205ENST00000559339 ABOP16442 354 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 DDCP20711 480 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 CNR1P21554 472 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 ALDH3A1P30838 453 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 NTSP30990 170 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 TIA1P31483 386 aaKnown RBP eCLIP4.05□□□□□ -1.769e-6■□□□□ 8.2
SNX1-205ENST00000559339 KRT20P35900 424 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 FEN1P39748 380 aaKnown RBP4.05□□□□□ -1.76
SNX1-205ENST00000559339 SOX3P41225 446 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 ST13P50502 369 aaKnown RBP4.05□□□□□ -1.76
SNX1-205ENST00000559339 HK2P52789 917 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 FOXA1P55317 472 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 SLC37A1P57057 533 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 DCAF7P61962 342 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 KCNJ2P63252 427 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 PSPHP78330 225 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 HMGCS1Q01581 520 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 PLGLB1Q02325 96 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 ZNF844Q08AG5 666 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 FUT7Q11130 342 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 PCLAFQ15004 111 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 C4orf17Q53FE4 359 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 PIGGQ5H8A4 983 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 ARL13AQ5H913 290 aaPredicted RBP4.05□□□□□ -1.76
SNX1-205ENST00000559339 TCHHL1Q5QJ38 904 aaPredicted RBP4.05□□□□□ -1.76
SNX1-205ENST00000559339 TBCELQ5QJ74 424 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 SH2D4BQ5SQS7 431 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 ZNF468Q5VIY5 522 aaPredicted RBP4.05□□□□□ -1.76
SNX1-205ENST00000559339 SLC22A10Q63ZE4 541 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 ZNF324BQ6AW86 544 aaPredicted RBP4.05□□□□□ -1.76
SNX1-205ENST00000559339 CLEC6AQ6EIG7 209 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 NOXRED1Q6NXP6 359 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 ARHGAP11AQ6P4F7 1023 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 SCIMPQ6UWF3 145 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 RGS9BPQ6ZS82 235 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 FAM47EQ6ZV65 393 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 IKBIPQ70UQ0 350 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 MDGA2Q7Z553 956 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 SLC22A16Q86VW1 577 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 NUDCD3Q8IVD9 361 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 SULF2Q8IWU5 870 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 C9orf40Q8IXQ3 194 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 DDIASQ8IXT1 998 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 CLYBLQ8N0X4 340 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 GHDCQ8N2G8 530 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 CPSF7Q8N684 471 aaKnown RBP4.05□□□□□ -1.76
SNX1-205ENST00000559339 ZFP62Q8NB50 900 aaPredicted RBP4.05□□□□□ -1.76
SNX1-205ENST00000559339 PSD4Q8NDX1 1056 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 C17orf47Q8NEP4 570 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 CDC26Q8NHZ8 85 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 WNT2BQ93097 391 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 TP53INP1Q96A56 240 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 EXOSC8Q96B26 276 aaKnown RBP4.05□□□□□ -1.76
SNX1-205ENST00000559339 ERP27Q96DN0 273 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 SPACA9Q96E40 222 aaPredicted RBP4.05□□□□□ -1.76
SNX1-205ENST00000559339 DTNBP1Q96EV8 351 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 PGM2Q96G03 612 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 APIPQ96GX9 242 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 PKNOX2Q96KN3 472 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 FRMD6Q96NE9 622 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 BBS4Q96RK4 519 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 KCNA7Q96RP8 456 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 FAM173AQ9BQD7 235 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 EBPLQ9BY08 206 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 HES7Q9BYE0 225 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 WWTR1Q9GZV5 400 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 OR10A5Q9H207 317 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 C12orf65Q9H3J6 166 aaKnown RBP4.05□□□□□ -1.76
SNX1-205ENST00000559339 LIN28AQ9H9Z2 209 aaKnown RBP4.05□□□□□ -1.76
SNX1-205ENST00000559339 CXorf21Q9HAI6 301 aa4.05□□□□□ -1.76
SNX1-205ENST00000559339 SSU72Q9NP77 194 aaKnown RBP4.05□□□□□ -1.76
SNX1-205ENST00000559339 KCNK9Q9NPC2 374 aa4.05□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms