RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 ZNF763Q0D2J5 394 aa10.76□□□□□ -0.69
LDLR-208ENST00000558518 GPR17Q13304 367 aa10.76□□□□□ -0.69
LDLR-208ENST00000558518 PUM1Q14671 1186 aaKnown RBP eCLIP10.76□□□□□ -0.699e-6■■■■□ 23.7
LDLR-208ENST00000558518 SYPL1Q16563 259 aa10.76□□□□□ -0.69
LDLR-208ENST00000558518 TRPV1Q8NER1 839 aa10.76□□□□□ -0.69
LDLR-208ENST00000558518 OR52I1Q8NGK6 324 aa10.76□□□□□ -0.69
LDLR-208ENST00000558518 RNF170Q96K19 258 aa10.76□□□□□ -0.69
LDLR-208ENST00000558518 SPATA9Q9BWV2 254 aa10.76□□□□□ -0.69
LDLR-208ENST00000558518 SERHL2Q9H4I8 314 aa10.76□□□□□ -0.69
LDLR-208ENST00000558518 NPAP1Q9NZP6 1156 aa10.76□□□□□ -0.69
LDLR-208ENST00000558518 CACNA1IQ9P0X4 2223 aa10.76□□□□□ -0.69
LDLR-208ENST00000558518 ING4Q9UNL4 249 aa10.76□□□□□ -0.69
LDLR-208ENST00000558518 SCN2AQ99250 2005 aa10.76□□□□□ -0.69
LDLR-208ENST00000558518 KCNE1BA0A087WTH5 132 aa10.76□□□□□ -0.69
LDLR-208ENST00000558518 ZC3H12DA2A288 527 aaKnown RBP10.76□□□□□ -0.69
LDLR-208ENST00000558518 HEPACAM2A8MVW5 462 aa10.76□□□□□ -0.69
LDLR-208ENST00000558518 MRPS14O60783 128 aaKnown RBP10.76□□□□□ -0.69
LDLR-208ENST00000558518 CD3GP09693 182 aa10.76□□□□□ -0.69
LDLR-208ENST00000558518 ETV6P41212 452 aa10.76□□□□□ -0.69
LDLR-208ENST00000558518 MLLT3P42568 568 aaPredicted RBP10.76□□□□□ -0.69
LDLR-208ENST00000558518 AP1S1P61966 158 aa10.76□□□□□ -0.69
LDLR-208ENST00000558518 PTSQ03393 145 aa10.76□□□□□ -0.69
LDLR-208ENST00000558518 MTAPQ13126 283 aa10.76□□□□□ -0.69
LDLR-208ENST00000558518 TOR1AIP1Q5JTV8 583 aa10.76□□□□□ -0.69
LDLR-208ENST00000558518 TMEM220Q6QAJ8 160 aa10.76□□□□□ -0.69
LDLR-208ENST00000558518 SYT9Q86SS6 491 aa10.76□□□□□ -0.69
LDLR-208ENST00000558518 PUM2Q8TB72 1066 aaKnown RBP eCLIP10.76□□□□□ -0.693e-10■■■■■ 33.9
LDLR-208ENST00000558518 ZFPM2Q8WW38 1151 aa10.76□□□□□ -0.69
LDLR-208ENST00000558518 AP3S1Q92572 193 aa10.76□□□□□ -0.69
LDLR-208ENST00000558518 AKAP1Q92667 903 aaKnown RBP eCLIP10.76□□□□□ -0.697e-7■■■■■ 29.7
LDLR-208ENST00000558518 CLEC4MQ9H2X3 399 aaPredicted RBP10.76□□□□□ -0.69
LDLR-208ENST00000558518 SLAMF7Q9NQ25 335 aa10.76□□□□□ -0.69
LDLR-208ENST00000558518 ENAMQ9NRM1 1142 aa10.76□□□□□ -0.69
LDLR-208ENST00000558518 H2AFY2Q9P0M6 372 aaPredicted RBP10.76□□□□□ -0.69
LDLR-208ENST00000558518 STOX2Q9P2F5 926 aaPredicted RBP10.76□□□□□ -0.69
LDLR-208ENST00000558518 CSNK1G3Q9Y6M4 447 aa10.76□□□□□ -0.69
LDLR-208ENST00000558518 TMEM229AB2RXF0 380 aa10.76□□□□□ -0.69
LDLR-208ENST00000558518 PRKRAO75569 313 aaKnown RBP10.76□□□□□ -0.69
LDLR-208ENST00000558518 RAB36O95755 333 aa10.76□□□□□ -0.69
LDLR-208ENST00000558518 URODP06132 367 aa10.76□□□□□ -0.69
LDLR-208ENST00000558518 MRPL3P09001 348 aaKnown RBP10.76□□□□□ -0.69
LDLR-208ENST00000558518 RHCEP18577 417 aa10.76□□□□□ -0.69
LDLR-208ENST00000558518 XCR1P46094 333 aa10.76□□□□□ -0.69
LDLR-208ENST00000558518 REEP3Q6NUK4 255 aa10.76□□□□□ -0.69
LDLR-208ENST00000558518 ARL9Q6T311 187 aa10.76□□□□□ -0.69
LDLR-208ENST00000558518 DBF4BQ8NFT6 615 aa10.76□□□□□ -0.69
LDLR-208ENST00000558518 OR4K5Q8NGD3 323 aa10.76□□□□□ -0.69
LDLR-208ENST00000558518 OR52N2Q8NGI0 321 aa10.76□□□□□ -0.69
LDLR-208ENST00000558518 OR51G2Q8NGK0 314 aa10.76□□□□□ -0.69
LDLR-208ENST00000558518 GTF3C2Q8WUA4 911 aaPredicted RBP10.76□□□□□ -0.69
LDLR-208ENST00000558518 SLC38A5Q8WUX1 472 aa10.76□□□□□ -0.69
LDLR-208ENST00000558518 ARPC5LQ9BPX5 153 aa10.76□□□□□ -0.69
LDLR-208ENST00000558518 TRMT61BQ9BVS5 477 aaKnown RBP10.76□□□□□ -0.69
LDLR-208ENST00000558518 GON7Q9BXV9 100 aa10.76□□□□□ -0.69
LDLR-208ENST00000558518 SPNS1Q9H2V7 528 aa10.76□□□□□ -0.69
LDLR-208ENST00000558518 CXorf36Q9H7Y0 433 aa10.76□□□□□ -0.69
LDLR-208ENST00000558518 CFAP97Q9P2B7 532 aa10.76□□□□□ -0.69
LDLR-208ENST00000558518 RALGAPA2Q2PPJ7 1873 aa10.75□□□□□ -0.69
LDLR-208ENST00000558518 FEZF1A0PJY2 475 aa10.75□□□□□ -0.69
LDLR-208ENST00000558518 MPZL2O60487 215 aa10.75□□□□□ -0.69
LDLR-208ENST00000558518 SERPINI2O75830 405 aa10.75□□□□□ -0.69
LDLR-208ENST00000558518 SEMG1P04279 462 aa10.75□□□□□ -0.69
LDLR-208ENST00000558518 DDCP20711 480 aa10.75□□□□□ -0.69
LDLR-208ENST00000558518 RRAS2P62070 204 aaPredicted RBP10.75□□□□□ -0.69
LDLR-208ENST00000558518 SLC3A1Q07837 685 aa10.75□□□□□ -0.69
LDLR-208ENST00000558518 LMAN2Q12907 356 aa10.75□□□□□ -0.69
LDLR-208ENST00000558518 ASAH1Q13510 395 aa10.75□□□□□ -0.69
LDLR-208ENST00000558518 GPR33Q49SQ1 333 aa10.75□□□□□ -0.69
LDLR-208ENST00000558518 PODNL1Q6PEZ8 512 aa10.75□□□□□ -0.69
LDLR-208ENST00000558518 ESPNLQ6ZVH7 1005 aa10.75□□□□□ -0.69
LDLR-208ENST00000558518 DEFB128Q7Z7B8 93 aa10.75□□□□□ -0.69
LDLR-208ENST00000558518 LRRTM4Q86VH4 590 aa10.75□□□□□ -0.69
LDLR-208ENST00000558518 OXR1Q8N573 874 aa10.75□□□□□ -0.69
LDLR-208ENST00000558518 OR4C15Q8NGM1 316 aa10.75□□□□□ -0.69
LDLR-208ENST00000558518 OR8J1Q8NGP2 316 aa10.75□□□□□ -0.69
LDLR-208ENST00000558518 FATE1Q969F0 183 aa10.75□□□□□ -0.69
LDLR-208ENST00000558518 HCN2Q9UL51 889 aa10.75□□□□□ -0.69
LDLR-208ENST00000558518 C1orf226A1L170 272 aa10.75□□□□□ -0.69
LDLR-208ENST00000558518 SMAD9O15198 467 aaKnown RBP10.75□□□□□ -0.69
LDLR-208ENST00000558518 PRMT3O60678 531 aa10.75□□□□□ -0.69
LDLR-208ENST00000558518 GATBO75879 557 aaKnown RBP10.75□□□□□ -0.69
LDLR-208ENST00000558518 PROS1P07225 676 aa10.75□□□□□ -0.69
LDLR-208ENST00000558518 RPS5P46782 204 aaKnown RBP10.75□□□□□ -0.69
LDLR-208ENST00000558518 HNMTP50135 292 aa10.75□□□□□ -0.69
LDLR-208ENST00000558518 RAB14P61106 215 aa10.75□□□□□ -0.69
LDLR-208ENST00000558518 TBPL1P62380 186 aa10.75□□□□□ -0.69
LDLR-208ENST00000558518 PIAS4Q8N2W9 510 aaPredicted RBP10.75□□□□□ -0.69
LDLR-208ENST00000558518 NANOGP1Q8N7R0 232 aa10.75□□□□□ -0.69
LDLR-208ENST00000558518 GDPD1Q8N9F7 314 aa10.75□□□□□ -0.69
LDLR-208ENST00000558518 L3MBTL4Q8NA19 623 aa10.75□□□□□ -0.69
LDLR-208ENST00000558518 CYB5D2Q8WUJ1 264 aa10.75□□□□□ -0.69
LDLR-208ENST00000558518 UCN3Q969E3 161 aa10.75□□□□□ -0.69
LDLR-208ENST00000558518 RAD9AQ99638 391 aa10.75□□□□□ -0.69
LDLR-208ENST00000558518 SUV39H2Q9H5I1 410 aa10.75□□□□□ -0.69
LDLR-208ENST00000558518 SLC28A3Q9HAS3 691 aa10.75□□□□□ -0.69
LDLR-208ENST00000558518 RDH14Q9HBH5 336 aa10.75□□□□□ -0.69
LDLR-208ENST00000558518 RBFOX1Q9NWB1 397 aaKnown RBP10.75□□□□□ -0.69
LDLR-208ENST00000558518 RDH8Q9NYR8 311 aa10.75□□□□□ -0.69
LDLR-208ENST00000558518 GLTPQ9NZD2 209 aa10.75□□□□□ -0.69
LDLR-208ENST00000558518 FTSJ1Q9UET6 329 aa10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms