RNA–Protein interactions for RNA: ENST00000557884.5

USP3-205, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 958 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-205ENST00000557884 VPS4BO75351 444 aa13.33□□□□□ -0.28
USP3-205ENST00000557884 C1QL1O75973 258 aa13.33□□□□□ -0.28
USP3-205ENST00000557884 ZFAND5O76080 213 aa13.33□□□□□ -0.28
USP3-205ENST00000557884 WDPCPO95876 746 aa13.33□□□□□ -0.28
USP3-205ENST00000557884 IGKV3-11P04433 115 aa13.33□□□□□ -0.28
USP3-205ENST00000557884 G6PDP11413 515 aa13.33□□□□□ -0.28
USP3-205ENST00000557884 EPHA3P29320 983 aa13.33□□□□□ -0.28
USP3-205ENST00000557884 SSTR4P31391 388 aa13.33□□□□□ -0.28
USP3-205ENST00000557884 GALNSP34059 522 aa13.33□□□□□ -0.28
USP3-205ENST00000557884 HPCAL1P37235 193 aa13.33□□□□□ -0.28
USP3-205ENST00000557884 ASMTP46597 345 aa13.33□□□□□ -0.28
USP3-205ENST00000557884 DIO3P55073 304 aa13.33□□□□□ -0.28
USP3-205ENST00000557884 ARG2P78540 354 aa13.33□□□□□ -0.28
USP3-205ENST00000557884 EMX2Q04743 252 aa13.33□□□□□ -0.28
USP3-205ENST00000557884 MEP1AQ16819 746 aa13.33□□□□□ -0.28
USP3-205ENST00000557884 SLC9B1Q4ZJI4 515 aa13.33□□□□□ -0.28
USP3-205ENST00000557884 ZNF385BQ569K4 471 aa13.33□□□□□ -0.28
USP3-205ENST00000557884 NXNQ6DKJ4 435 aa13.33□□□□□ -0.28
USP3-205ENST00000557884 FAM111BQ6SJ93 734 aa13.33□□□□□ -0.28
USP3-205ENST00000557884 IGFL2Q6UWQ7 119 aa13.33□□□□□ -0.28
USP3-205ENST00000557884 ZNF843Q8N446 348 aa13.33□□□□□ -0.28
USP3-205ENST00000557884 ZADH2Q8N4Q0 377 aa13.33□□□□□ -0.28
USP3-205ENST00000557884 KRTCAP2Q8N6L1 136 aa13.33□□□□□ -0.28
USP3-205ENST00000557884 OR9A2Q8NGT5 310 aa13.33□□□□□ -0.28
USP3-205ENST00000557884 PIWIL2Q8TC59 973 aaKnown RBP13.33□□□□□ -0.28
USP3-205ENST00000557884 NUDT8Q8WV74 236 aa13.33□□□□□ -0.28
USP3-205ENST00000557884 TM9SF4Q92544 642 aa13.33□□□□□ -0.28
USP3-205ENST00000557884 ART5Q96L15 291 aa13.33□□□□□ -0.28
USP3-205ENST00000557884 C7orf26Q96N11 449 aa13.33□□□□□ -0.28
USP3-205ENST00000557884 LMF1Q96S06 567 aa13.33□□□□□ -0.28
USP3-205ENST00000557884 ANKRD10Q9NXR5 420 aa13.33□□□□□ -0.28
USP3-205ENST00000557884 SH3BP4Q9P0V3 963 aa13.33□□□□□ -0.28
USP3-205ENST00000557884 DYTNA2CJ06 578 aa13.32□□□□□ -0.28
USP3-205ENST00000557884 GABRR3A8MPY1 467 aa13.32□□□□□ -0.28
USP3-205ENST00000557884 TCP11X1B4DZS4 312 aa13.32□□□□□ -0.28
USP3-205ENST00000557884 WWP2O00308 870 aa13.32□□□□□ -0.28
USP3-205ENST00000557884 DYNC1I1O14576 645 aa13.32□□□□□ -0.28
USP3-205ENST00000557884 DIAPH2O60879 1101 aa13.32□□□□□ -0.28
USP3-205ENST00000557884 CLPSP04118 112 aa13.32□□□□□ -0.28
USP3-205ENST00000557884 ATP1B1P05026 303 aa13.32□□□□□ -0.28
USP3-205ENST00000557884 PRPS2P11908 318 aa13.32□□□□□ -0.28
USP3-205ENST00000557884 PCSK2P16519 638 aa13.32□□□□□ -0.28
USP3-205ENST00000557884 LBPP18428 481 aa13.32□□□□□ -0.28
USP3-205ENST00000557884 NTSP30990 170 aa13.32□□□□□ -0.28
USP3-205ENST00000557884 NCBP2P52298 156 aaKnown RBP eCLIP13.32□□□□□ -0.281e-6■■■■□ 23.8
USP3-205ENST00000557884 MLF1P58340 268 aa13.32□□□□□ -0.28
USP3-205ENST00000557884 RNF4P78317 190 aa13.32□□□□□ -0.28
USP3-205ENST00000557884 MRPS35P82673 323 aaKnown RBP13.32□□□□□ -0.28
USP3-205ENST00000557884 MGAT2Q10469 447 aa13.32□□□□□ -0.28
USP3-205ENST00000557884 KLRB1Q12918 225 aa13.32□□□□□ -0.28
USP3-205ENST00000557884 MAD2L1Q13257 205 aaPredicted RBP13.32□□□□□ -0.28
USP3-205ENST00000557884 EXOSC7Q15024 291 aaKnown RBP13.32□□□□□ -0.28
USP3-205ENST00000557884 SLC6A19Q695T7 634 aa13.32□□□□□ -0.28
USP3-205ENST00000557884 IGFL3Q6UXB1 125 aa13.32□□□□□ -0.28
USP3-205ENST00000557884 RNF111Q6ZNA4 994 aa13.32□□□□□ -0.28
USP3-205ENST00000557884 LARP4Q71RC2 724 aaKnown RBP eCLIP13.32□□□□□ -0.28
USP3-205ENST00000557884 C9orf40Q8IXQ3 194 aa13.32□□□□□ -0.28
USP3-205ENST00000557884 SAMD14Q8IZD0 417 aaPredicted RBP13.32□□□□□ -0.28
USP3-205ENST00000557884 VWA5B2Q8N398 1253 aa13.32□□□□□ -0.28
USP3-205ENST00000557884 ARFGAP2Q8N6H7 521 aa13.32□□□□□ -0.28
USP3-205ENST00000557884 SIMC1Q8NDZ2 872 aa13.32□□□□□ -0.28
USP3-205ENST00000557884 CATSPER1Q8NEC5 780 aa13.32□□□□□ -0.28
USP3-205ENST00000557884 SUN3Q8TAQ9 357 aa13.32□□□□□ -0.28
USP3-205ENST00000557884 KAT2AQ92830 837 aa13.32□□□□□ -0.28
USP3-205ENST00000557884 CIDECQ96AQ7 238 aaPredicted RBP13.32□□□□□ -0.28
USP3-205ENST00000557884 PPCDCQ96CD2 204 aa13.32□□□□□ -0.28
USP3-205ENST00000557884 GAL3ST4Q96RP7 486 aa13.32□□□□□ -0.28
USP3-205ENST00000557884 SLAMF7Q9NQ25 335 aa13.32□□□□□ -0.28
USP3-205ENST00000557884 MAT2BQ9NZL9 334 aa13.32□□□□□ -0.28
USP3-205ENST00000557884 NOP53Q9NZM5 478 aaKnown RBP13.32□□□□□ -0.28
USP3-205ENST00000557884 ABI3Q9P2A4 366 aa13.32□□□□□ -0.28
USP3-205ENST00000557884 USH1CQ9Y6N9 552 aa13.32□□□□□ -0.28
USP3-205ENST00000557884 TMEM200CA6NKL6 621 aa13.31□□□□□ -0.28
USP3-205ENST00000557884 MYO1GB0I1T2 1018 aa13.31□□□□□ -0.28
USP3-205ENST00000557884 ZNF195O14628 629 aa13.31□□□□□ -0.28
USP3-205ENST00000557884 SCAMP2O15127 329 aaKnown RBP13.31□□□□□ -0.28
USP3-205ENST00000557884 PDPK1O15530 556 aa13.31□□□□□ -0.28
USP3-205ENST00000557884 EFNA1P20827 205 aaPredicted RBP13.31□□□□□ -0.28
USP3-205ENST00000557884 NME5P56597 212 aa13.31□□□□□ -0.28
USP3-205ENST00000557884 SLC37A1P57057 533 aa13.31□□□□□ -0.28
USP3-205ENST00000557884 PDE7AQ13946 482 aa13.31□□□□□ -0.28
USP3-205ENST00000557884 MPEG1Q2M385 716 aa13.31□□□□□ -0.28
USP3-205ENST00000557884 SMU1Q2TAY7 513 aa13.31□□□□□ -0.28
USP3-205ENST00000557884 PRICKLE4Q2TBC4 344 aa13.31□□□□□ -0.28
USP3-205ENST00000557884 ZNF628Q5EBL2 1059 aa13.31□□□□□ -0.28
USP3-205ENST00000557884 ZNF468Q5VIY5 522 aaPredicted RBP13.31□□□□□ -0.28
USP3-205ENST00000557884 HPS6Q86YV9 775 aa13.31□□□□□ -0.28
USP3-205ENST00000557884 FAM9CQ8IZT9 166 aa13.31□□□□□ -0.28
USP3-205ENST00000557884 OR7A2PQ8NGA2 310 aa13.31□□□□□ -0.28
USP3-205ENST00000557884 THOC1Q96FV9 657 aaKnown RBP13.31□□□□□ -0.28
USP3-205ENST00000557884 OR52B2Q96RD2 323 aa13.31□□□□□ -0.28
USP3-205ENST00000557884 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP13.31□□□□□ -0.285e-7■■□□□ 12.5
USP3-205ENST00000557884 OR10A5Q9H207 317 aa13.31□□□□□ -0.28
USP3-205ENST00000557884 GLIPR2Q9H4G4 154 aa13.31□□□□□ -0.28
USP3-205ENST00000557884 ANKRA2Q9H9E1 313 aa13.31□□□□□ -0.28
USP3-205ENST00000557884 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.31□□□□□ -0.28
USP3-205ENST00000557884 ASIC5Q9NY37 505 aa13.31□□□□□ -0.28
USP3-205ENST00000557884 TAS2R7Q9NYW3 318 aa13.31□□□□□ -0.28
USP3-205ENST00000557884 BCAP29Q9UHQ4 241 aa13.31□□□□□ -0.28
USP3-205ENST00000557884 PRRC2CQ9Y520 2896 aaKnown RBP13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 333.6 ms