RNA–Protein interactions for RNA: ENST00000554785.1

PRPF39-208, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 2,121 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-208ENST00000554785 ZNF263O14978 683 aa1.32□□□□□ -2.2
PRPF39-208ENST00000554785 TEX28O15482 410 aa1.32□□□□□ -2.2
PRPF39-208ENST00000554785 NMT2O60551 498 aa1.32□□□□□ -2.2
PRPF39-208ENST00000554785 FMO6PO60774 539 aa1.32□□□□□ -2.2
PRPF39-208ENST00000554785 N4BP1O75113 896 aaKnown RBP1.32□□□□□ -2.2
PRPF39-208ENST00000554785 RAD51DO75771 328 aa1.32□□□□□ -2.2
PRPF39-208ENST00000554785 CABYRO75952 493 aa1.32□□□□□ -2.2
PRPF39-208ENST00000554785 NDUFB10O96000 172 aa1.32□□□□□ -2.2
PRPF39-208ENST00000554785 GH1P01241 217 aa1.32□□□□□ -2.2
PRPF39-208ENST00000554785 YES1P07947 543 aa1.32□□□□□ -2.2
PRPF39-208ENST00000554785 ZNF853P0CG23 659 aa1.32□□□□□ -2.2
PRPF39-208ENST00000554785 RPL35AP18077 110 aaKnown RBP1.32□□□□□ -2.2
PRPF39-208ENST00000554785 CYP2A7P20853 494 aa1.32□□□□□ -2.2
PRPF39-208ENST00000554785 ELAVL4P26378 380 aaKnown RBP1.32□□□□□ -2.2
PRPF39-208ENST00000554785 DUTP33316 252 aaKnown RBP1.32□□□□□ -2.2
PRPF39-208ENST00000554785 COPB2P35606 906 aa1.32□□□□□ -2.2
PRPF39-208ENST00000554785 OR3A1P47881 315 aa1.32□□□□□ -2.2
PRPF39-208ENST00000554785 LEPRP48357 1165 aaKnown RBP1.32□□□□□ -2.2
PRPF39-208ENST00000554785 NR0B1P51843 470 aaKnown RBP1.32□□□□□ -2.2
PRPF39-208ENST00000554785 SNU13P55769 128 aaKnown RBP1.32□□□□□ -2.2
PRPF39-208ENST00000554785 CLDN17P56750 224 aa1.32□□□□□ -2.2
PRPF39-208ENST00000554785 ASIC1P78348 528 aa1.32□□□□□ -2.2
PRPF39-208ENST00000554785 SGSM1Q2NKQ1 1148 aa1.32□□□□□ -2.2
PRPF39-208ENST00000554785 TMEM30BQ3MIR4 351 aa1.32□□□□□ -2.2
PRPF39-208ENST00000554785 HSDL1Q3SXM5 330 aa1.32□□□□□ -2.2
PRPF39-208ENST00000554785 RABL6Q3YEC7 729 aaPredicted RBP1.32□□□□□ -2.2
PRPF39-208ENST00000554785 KBTBD12Q3ZCT8 623 aa1.32□□□□□ -2.2
PRPF39-208ENST00000554785 IQCCQ4KMZ1 466 aa1.32□□□□□ -2.2
PRPF39-208ENST00000554785 ZNF542PQ5EBM4 170 aa1.32□□□□□ -2.2
PRPF39-208ENST00000554785 GLRA4Q5JXX5 417 aa1.32□□□□□ -2.2
PRPF39-208ENST00000554785 PWWP2BQ6NUJ5 590 aa1.32□□□□□ -2.2
PRPF39-208ENST00000554785 TATDN1Q6P1N9 297 aa1.32□□□□□ -2.2
PRPF39-208ENST00000554785 PODNL1Q6PEZ8 512 aa1.32□□□□□ -2.2
PRPF39-208ENST00000554785 IYDQ6PHW0 289 aa1.32□□□□□ -2.2
PRPF39-208ENST00000554785 BHLHB9Q6PI77 547 aa1.32□□□□□ -2.2
PRPF39-208ENST00000554785 LEKR1Q6ZMV7 388 aa1.32□□□□□ -2.2
PRPF39-208ENST00000554785 TMEM179Q6ZVK1 233 aa1.32□□□□□ -2.2
PRPF39-208ENST00000554785 SLC24A5Q71RS6 500 aa1.32□□□□□ -2.2
PRPF39-208ENST00000554785 BTN2A1Q7KYR7 527 aa1.32□□□□□ -2.2
PRPF39-208ENST00000554785 FCRLAQ7L513 359 aa1.32□□□□□ -2.2
PRPF39-208ENST00000554785 MARCH9Q86YJ5 346 aa1.32□□□□□ -2.2
PRPF39-208ENST00000554785 CLYBLQ8N0X4 340 aa1.32□□□□□ -2.2
PRPF39-208ENST00000554785 RAB42Q8N4Z0 105 aa1.32□□□□□ -2.2
PRPF39-208ENST00000554785 KIAA0895Q8NCT3 520 aa1.32□□□□□ -2.2
PRPF39-208ENST00000554785 SPATA18Q8TC71 538 aa1.32□□□□□ -2.2
PRPF39-208ENST00000554785 CKAP2Q8WWK9 683 aa1.32□□□□□ -2.2
PRPF39-208ENST00000554785 ATP6V0A1Q93050 837 aa1.32□□□□□ -2.2
PRPF39-208ENST00000554785 TOP1MTQ969P6 601 aa1.32□□□□□ -2.2
PRPF39-208ENST00000554785 AZIN2Q96A70 460 aa1.32□□□□□ -2.2
PRPF39-208ENST00000554785 MTG1Q9BT17 334 aaPredicted RBP1.32□□□□□ -2.2
PRPF39-208ENST00000554785 ALKBH7Q9BT30 221 aaPredicted RBP1.32□□□□□ -2.2
PRPF39-208ENST00000554785 PI4K2AQ9BTU6 479 aa1.32□□□□□ -2.2
PRPF39-208ENST00000554785 RBM4Q9BWF3 364 aaKnown RBP1.32□□□□□ -2.2
PRPF39-208ENST00000554785 NACAP1Q9BZK3 213 aa1.32□□□□□ -2.2
PRPF39-208ENST00000554785 ZNF350Q9GZX5 532 aa1.32□□□□□ -2.2
PRPF39-208ENST00000554785 SRD5A3Q9H8P0 318 aa1.32□□□□□ -2.2
PRPF39-208ENST00000554785 IARS2Q9NSE4 1012 aaKnown RBP1.32□□□□□ -2.2
PRPF39-208ENST00000554785 TBC1D13Q9NVG8 400 aa1.32□□□□□ -2.2
PRPF39-208ENST00000554785 ATAD3AQ9NVI7 634 aa1.32□□□□□ -2.2
PRPF39-208ENST00000554785 DNAJC17Q9NVM6 304 aaKnown RBP1.32□□□□□ -2.2
PRPF39-208ENST00000554785 CLIP2Q9UDT6 1046 aa1.32□□□□□ -2.2
PRPF39-208ENST00000554785 NOCTQ9UK39 431 aaKnown RBP1.32□□□□□ -2.2
PRPF39-208ENST00000554785 KLK13Q9UKR3 277 aa1.32□□□□□ -2.2
PRPF39-208ENST00000554785 RAB23Q9ULC3 237 aa1.32□□□□□ -2.2
PRPF39-208ENST00000554785 MRPS28Q9Y2Q9 187 aaKnown RBP1.32□□□□□ -2.2
PRPF39-208ENST00000554785 HBS1LQ9Y450 684 aaKnown RBP1.32□□□□□ -2.2
PRPF39-208ENST00000554785 KNL1Q8NG31 2342 aa1.32□□□□□ -2.2
PRPF39-208ENST00000554785 CENPEQ02224 2701 aa1.32□□□□□ -2.2
PRPF39-208ENST00000554785 ICE1Q9Y2F5 2266 aa1.31□□□□□ -2.2
PRPF39-208ENST00000554785 MEIOCA2RUB1 952 aa1.31□□□□□ -2.2
PRPF39-208ENST00000554785 LRRD1A4D1F6 860 aa1.31□□□□□ -2.2
PRPF39-208ENST00000554785 MTMR11A4FU01 709 aa1.31□□□□□ -2.2
PRPF39-208ENST00000554785 PCNX2A6NKB5 2137 aa1.31□□□□□ -2.2
PRPF39-208ENST00000554785 A8MVM7 634 aa1.31□□□□□ -2.2
PRPF39-208ENST00000554785 E5RGE8 158 aa1.31□□□□□ -2.2
PRPF39-208ENST00000554785 F5H6K3 240 aa1.31□□□□□ -2.2
PRPF39-208ENST00000554785 H3BMM5 538 aa1.31□□□□□ -2.2
PRPF39-208ENST00000554785 NR5A2O00482 541 aa1.31□□□□□ -2.2
PRPF39-208ENST00000554785 EDIL3O43854 480 aa1.31□□□□□ -2.2
PRPF39-208ENST00000554785 NME6O75414 186 aaPredicted RBP1.31□□□□□ -2.2
PRPF39-208ENST00000554785 CRCPO75575 148 aa1.31□□□□□ -2.2
PRPF39-208ENST00000554785 SLC16A8O95907 504 aa1.31□□□□□ -2.2
PRPF39-208ENST00000554785 IGLV1-44P01699 117 aa1.31□□□□□ -2.2
PRPF39-208ENST00000554785 PROS1P07225 676 aa1.31□□□□□ -2.2
PRPF39-208ENST00000554785 C8orf89P0DMQ9 161 aa1.31□□□□□ -2.2
PRPF39-208ENST00000554785 DLATP10515 647 aaKnown RBP1.31□□□□□ -2.2
PRPF39-208ENST00000554785 ZNF26P17031 533 aaPredicted RBP1.31□□□□□ -2.2
PRPF39-208ENST00000554785 RBMS1P29558 406 aaKnown RBP1.31□□□□□ -2.2
PRPF39-208ENST00000554785 CD52P31358 61 aa1.31□□□□□ -2.2
PRPF39-208ENST00000554785 RFC2P35250 354 aa1.31□□□□□ -2.2
PRPF39-208ENST00000554785 SLC1A4P43007 532 aa1.31□□□□□ -2.2
PRPF39-208ENST00000554785 IER3P46695 156 aa1.31□□□□□ -2.2
PRPF39-208ENST00000554785 OR3A3P47888 321 aa1.31□□□□□ -2.2
PRPF39-208ENST00000554785 VEGFCP49767 419 aa1.31□□□□□ -2.2
PRPF39-208ENST00000554785 ATP12AP54707 1039 aa1.31□□□□□ -2.2
PRPF39-208ENST00000554785 PAX9P55771 341 aa1.31□□□□□ -2.2
PRPF39-208ENST00000554785 DCDC1P59894 354 aa1.31□□□□□ -2.2
PRPF39-208ENST00000554785 STX1BP61266 288 aa1.31□□□□□ -2.2
PRPF39-208ENST00000554785 CSNK2BP67870 215 aa1.31□□□□□ -2.2
PRPF39-208ENST00000554785 AKAP17AQ02040 695 aaKnown RBP1.31□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms