RNA–Protein interactions for RNA: ENST00000554604.5

SHMT2-214, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-214ENST00000554604 PRM3Q9NNZ6 103 aa11.66□□□□□ -0.54
SHMT2-214ENST00000554604 AGPAT4Q9NRZ5 378 aa11.66□□□□□ -0.54
SHMT2-214ENST00000554604 DNAJC11Q9NVH1 559 aa11.66□□□□□ -0.54
SHMT2-214ENST00000554604 TEKT2Q9UIF3 430 aa11.66□□□□□ -0.54
SHMT2-214ENST00000554604 MCM8Q9UJA3 840 aa11.66□□□□□ -0.54
SHMT2-214ENST00000554604 LEF1Q9UJU2 399 aaPredicted RBP11.66□□□□□ -0.54
SHMT2-214ENST00000554604 PACSIN3Q9UKS6 424 aa11.66□□□□□ -0.54
SHMT2-214ENST00000554604 RNF11Q9Y3C5 154 aa11.66□□□□□ -0.54
SHMT2-214ENST00000554604 PCDHGA10Q9Y5H3 936 aa11.66□□□□□ -0.54
SHMT2-214ENST00000554604 FXYD1O00168 92 aa11.65□□□□□ -0.54
SHMT2-214ENST00000554604 CASQ2O14958 399 aaPredicted RBP11.65□□□□□ -0.54
SHMT2-214ENST00000554604 ANKRD28O15084 1053 aa11.65□□□□□ -0.54
SHMT2-214ENST00000554604 CHST10O43529 356 aa11.65□□□□□ -0.54
SHMT2-214ENST00000554604 BAG2O95816 211 aa11.65□□□□□ -0.54
SHMT2-214ENST00000554604 B3GALT4O96024 378 aa11.65□□□□□ -0.54
SHMT2-214ENST00000554604 FHP07954 510 aa11.65□□□□□ -0.54
SHMT2-214ENST00000554604 CELA2AP08217 269 aa11.65□□□□□ -0.54
SHMT2-214ENST00000554604 ITGAMP11215 1152 aa11.65□□□□□ -0.54
SHMT2-214ENST00000554604 ATP6V1C1P21283 382 aa11.65□□□□□ -0.54
SHMT2-214ENST00000554604 EFNA3P52797 238 aa11.65□□□□□ -0.54
SHMT2-214ENST00000554604 NME5P56597 212 aa11.65□□□□□ -0.54
SHMT2-214ENST00000554604 STXBP1P61764 594 aaKnown RBP11.65□□□□□ -0.54
SHMT2-214ENST00000554604 UFM1P61960 85 aa11.65□□□□□ -0.54
SHMT2-214ENST00000554604 OLR1P78380 273 aa11.65□□□□□ -0.54
SHMT2-214ENST00000554604 PCDH1Q08174 1060 aa11.65□□□□□ -0.54
SHMT2-214ENST00000554604 MRPL49Q13405 166 aaKnown RBP11.65□□□□□ -0.54
SHMT2-214ENST00000554604 ELOAQ14241 798 aaKnown RBP11.65□□□□□ -0.54
SHMT2-214ENST00000554604 SLBPQ14493 270 aaKnown RBP eCLIP11.65□□□□□ -0.54
SHMT2-214ENST00000554604 TOR1AIP1Q5JTV8 583 aa11.65□□□□□ -0.54
SHMT2-214ENST00000554604 ABHD17BQ5VST6 288 aa11.65□□□□□ -0.54
SHMT2-214ENST00000554604 IL23RQ5VWK5 629 aa11.65□□□□□ -0.54
SHMT2-214ENST00000554604 B3GNTL1Q67FW5 361 aaPredicted RBP11.65□□□□□ -0.54
SHMT2-214ENST00000554604 CYP20A1Q6UW02 462 aa11.65□□□□□ -0.54
SHMT2-214ENST00000554604 TMIGD1Q6UXZ0 262 aa11.65□□□□□ -0.54
SHMT2-214ENST00000554604 SLCO4C1Q6ZQN7 724 aa11.65□□□□□ -0.54
SHMT2-214ENST00000554604 ANKRD37Q7Z713 158 aa11.65□□□□□ -0.54
SHMT2-214ENST00000554604 BHLHE22Q8NFJ8 381 aaPredicted RBP11.65□□□□□ -0.54
SHMT2-214ENST00000554604 OR1N1Q8NGS0 311 aa11.65□□□□□ -0.54
SHMT2-214ENST00000554604 PSMF1Q92530 271 aa11.65□□□□□ -0.54
SHMT2-214ENST00000554604 LRRC58Q96CX6 371 aa11.65□□□□□ -0.54
SHMT2-214ENST00000554604 DUS3LQ96G46 650 aaKnown RBP11.65□□□□□ -0.54
SHMT2-214ENST00000554604 IMMP1LQ96LU5 166 aa11.65□□□□□ -0.54
SHMT2-214ENST00000554604 ZNF570Q96NI8 536 aa11.65□□□□□ -0.54
SHMT2-214ENST00000554604 C1orf50Q9BV19 199 aa11.65□□□□□ -0.54
SHMT2-214ENST00000554604 SLC6A16Q9GZN6 736 aa11.65□□□□□ -0.54
SHMT2-214ENST00000554604 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP11.65□□□□□ -0.54
SHMT2-214ENST00000554604 VCX3BQ9H321 246 aa11.65□□□□□ -0.54
SHMT2-214ENST00000554604 GPRC5BQ9NZH0 403 aa11.65□□□□□ -0.54
SHMT2-214ENST00000554604 C6orf203Q9P0P8 240 aaPredicted RBP11.65□□□□□ -0.54
SHMT2-214ENST00000554604 ZNF490Q9ULM2 529 aaPredicted RBP11.65□□□□□ -0.54
SHMT2-214ENST00000554604 SNX6Q9UNH7 406 aa11.65□□□□□ -0.54
SHMT2-214ENST00000554604 EIF3LQ9Y262 564 aaKnown RBP11.65□□□□□ -0.54
SHMT2-214ENST00000554604 MAST4O15021 2626 aa11.65□□□□□ -0.54
SHMT2-214ENST00000554604 C15orf38-AP3S2A0A0A6YYH1 394 aa11.64□□□□□ -0.55
SHMT2-214ENST00000554604 CLEC18AA5D8T8 446 aa11.64□□□□□ -0.55
SHMT2-214ENST00000554604 ASPDHA6ND91 283 aa11.64□□□□□ -0.55
SHMT2-214ENST00000554604 PRORSD1PA6NEY8 169 aa11.64□□□□□ -0.55
SHMT2-214ENST00000554604 ANKDD1BA6NHY2 528 aa11.64□□□□□ -0.55
SHMT2-214ENST00000554604 CCDC154A6NI56 674 aa11.64□□□□□ -0.55
SHMT2-214ENST00000554604 MAGEB17A8MXT2 336 aa11.64□□□□□ -0.55
SHMT2-214ENST00000554604 B4GALT2O60909 372 aa11.64□□□□□ -0.55
SHMT2-214ENST00000554604 DNAJB6O75190 326 aa11.64□□□□□ -0.55
SHMT2-214ENST00000554604 C8BP07358 591 aa11.64□□□□□ -0.55
SHMT2-214ENST00000554604 RNH1P13489 461 aaKnown RBP11.64□□□□□ -0.55
SHMT2-214ENST00000554604 HSD17B1P14061 328 aa11.64□□□□□ -0.55
SHMT2-214ENST00000554604 GSTM2P28161 218 aa11.64□□□□□ -0.55
SHMT2-214ENST00000554604 SOX11P35716 441 aa11.64□□□□□ -0.55
SHMT2-214ENST00000554604 TSFMP43897 325 aaKnown RBP11.64□□□□□ -0.55
SHMT2-214ENST00000554604 SLC7A2P52569 658 aa11.64□□□□□ -0.55
SHMT2-214ENST00000554604 OR4D2P58180 307 aa11.64□□□□□ -0.55
SHMT2-214ENST00000554604 RHAGQ02094 409 aa11.64□□□□□ -0.55
SHMT2-214ENST00000554604 EXT1Q16394 746 aa11.64□□□□□ -0.55
SHMT2-214ENST00000554604 EIF2S3LQ2VIR3 472 aaKnown RBP11.64□□□□□ -0.55
SHMT2-214ENST00000554604 RFTN2Q52LD8 501 aaPredicted RBP11.64□□□□□ -0.55
SHMT2-214ENST00000554604 SFT2D3Q587I9 215 aa11.64□□□□□ -0.55
SHMT2-214ENST00000554604 XKR6Q5GH73 641 aa11.64□□□□□ -0.55
SHMT2-214ENST00000554604 LIPJQ5W064 366 aa11.64□□□□□ -0.55
SHMT2-214ENST00000554604 PLAG1Q6DJT9 500 aa11.64□□□□□ -0.55
SHMT2-214ENST00000554604 CLEC18BQ6UXF7 455 aa11.64□□□□□ -0.55
SHMT2-214ENST00000554604 RNF111Q6ZNA4 994 aa11.64□□□□□ -0.55
SHMT2-214ENST00000554604 ARPINQ7Z6K5 226 aa11.64□□□□□ -0.55
SHMT2-214ENST00000554604 FAM9CQ8IZT9 166 aa11.64□□□□□ -0.55
SHMT2-214ENST00000554604 DPP10Q8N608 796 aa11.64□□□□□ -0.55
SHMT2-214ENST00000554604 RNF148Q8N7C7 305 aa11.64□□□□□ -0.55
SHMT2-214ENST00000554604 CLEC18CQ8NCF0 446 aa11.64□□□□□ -0.55
SHMT2-214ENST00000554604 GLB1L3Q8NCI6 653 aaPredicted RBP11.64□□□□□ -0.55
SHMT2-214ENST00000554604 HIPK4Q8NE63 616 aa11.64□□□□□ -0.55
SHMT2-214ENST00000554604 PLPP5Q8NEB5 264 aa11.64□□□□□ -0.55
SHMT2-214ENST00000554604 CATSPER1Q8NEC5 780 aa11.64□□□□□ -0.55
SHMT2-214ENST00000554604 SUN3Q8TAQ9 357 aa11.64□□□□□ -0.55
SHMT2-214ENST00000554604 PRR7Q8TB68 274 aa11.64□□□□□ -0.55
SHMT2-214ENST00000554604 TEX37Q96LM6 180 aa11.64□□□□□ -0.55
SHMT2-214ENST00000554604 LPAR4Q99677 370 aa11.64□□□□□ -0.55
SHMT2-214ENST00000554604 PITHD1Q9GZP4 211 aaPredicted RBP11.64□□□□□ -0.55
SHMT2-214ENST00000554604 RHBGQ9H310 441 aa11.64□□□□□ -0.55
SHMT2-214ENST00000554604 MUC13Q9H3R2 512 aa11.64□□□□□ -0.55
SHMT2-214ENST00000554604 KLHL31Q9H511 634 aa11.64□□□□□ -0.55
SHMT2-214ENST00000554604 CLK4Q9HAZ1 481 aaKnown RBP11.64□□□□□ -0.55
SHMT2-214ENST00000554604 LRTM1Q9HBL6 345 aa11.64□□□□□ -0.55
SHMT2-214ENST00000554604 LANCL2Q9NS86 450 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms