RNA–Protein interactions for RNA: ENST00000542286.5

DDX55-209, Transcript of DEAD-box helicase 55, human

TSL 2

Gene DDX55, Length 2,767 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX55-209	ENST00000542286	LCTL	Q6UWM7	567 aa		14	□□□□□ -0.17
DDX55-209	ENST00000542286	SUN5	Q8TC36	379 aa		14	□□□□□ -0.17
DDX55-209	ENST00000542286	TMEM246	Q9BRR3	403 aa		14	□□□□□ -0.17
DDX55-209	ENST00000542286	TMEM106C	Q9BVX2	250 aa		14	□□□□□ -0.17
DDX55-209	ENST00000542286	MKRN2	Q9H000	416 aa	Known RBP	14	□□□□□ -0.17
DDX55-209	ENST00000542286	OR51E2	Q9H255	320 aa		14	□□□□□ -0.17
DDX55-209	ENST00000542286	NMNAT1	Q9HAN9	279 aa	Predicted RBP	14	□□□□□ -0.17
DDX55-209	ENST00000542286	SIRT3	Q9NTG7	399 aa	Predicted RBP	14	□□□□□ -0.17
DDX55-209	ENST00000542286	DUSP12	Q9UNI6	340 aa		14	□□□□□ -0.17
DDX55-209	ENST00000542286	WDR87	Q6ZQQ6	2873 aa		13.99	□□□□□ -0.17
DDX55-209	ENST00000542286	METTL15	A6NJ78	407 aa		13.99	□□□□□ -0.17
DDX55-209	ENST00000542286	ANHX	E9PGG2	379 aa		13.99	□□□□□ -0.17
DDX55-209	ENST00000542286	HAT1	O14929	419 aa		13.99	□□□□□ -0.17
DDX55-209	ENST00000542286	SLC31A1	O15431	190 aa		13.99	□□□□□ -0.17
DDX55-209	ENST00000542286	PDPK1	O15530	556 aa		13.99	□□□□□ -0.17
DDX55-209	ENST00000542286	OR2B6	P58173	313 aa		13.99	□□□□□ -0.17
DDX55-209	ENST00000542286	RAB8A	P61006	207 aa		13.99	□□□□□ -0.17
DDX55-209	ENST00000542286	SNAP47	Q5SQN1	464 aa		13.99	□□□□□ -0.17
DDX55-209	ENST00000542286	TPRG1L	Q5T0D9	272 aa		13.99	□□□□□ -0.17
DDX55-209	ENST00000542286	FBXO46	Q6PJ61	603 aa	Predicted RBP	13.99	□□□□□ -0.17
DDX55-209	ENST00000542286	TAGAP	Q8N103	731 aa		13.99	□□□□□ -0.17
DDX55-209	ENST00000542286	OR8K5	Q8NH50	307 aa		13.99	□□□□□ -0.17
DDX55-209	ENST00000542286	MED30	Q96HR3	178 aa		13.99	□□□□□ -0.17
DDX55-209	ENST00000542286	METTL2A	Q96IZ6	378 aa	Known RBP	13.99	□□□□□ -0.17
DDX55-209	ENST00000542286	ZNF514	Q96K75	400 aa	Predicted RBP	13.99	□□□□□ -0.17
DDX55-209	ENST00000542286	PIP5K1A	Q99755	562 aa		13.99	□□□□□ -0.17
DDX55-209	ENST00000542286	SPHK1	Q9NYA1	384 aa		13.99	□□□□□ -0.17
DDX55-209	ENST00000542286	TRPC4	Q9UBN4	977 aa		13.99	□□□□□ -0.17
DDX55-209	ENST00000542286	MUC22	E2RYF6	1773 aa	Predicted RBP	13.99	□□□□□ -0.17
DDX55-209	ENST00000542286	COL4A3	Q01955	1670 aa		13.99	□□□□□ -0.17
DDX55-209	ENST00000542286	CENPX	A8MT69	81 aa		13.99	□□□□□ -0.17
DDX55-209	ENST00000542286	C5orf58	C9J3I9	102 aa		13.99	□□□□□ -0.17
DDX55-209	ENST00000542286	C1QTNF3-AMACR	E9PGA6	284 aa		13.99	□□□□□ -0.17
DDX55-209	ENST00000542286	HMGN4	O00479	90 aa		13.99	□□□□□ -0.17
DDX55-209	ENST00000542286	PGRMC2	O15173	223 aa		13.99	□□□□□ -0.17
DDX55-209	ENST00000542286	SSX4	O60224	188 aa		13.99	□□□□□ -0.17
DDX55-209	ENST00000542286	DBT	P11182	482 aa	Known RBP	13.99	□□□□□ -0.17
DDX55-209	ENST00000542286	CNR2	P34972	360 aa		13.99	□□□□□ -0.17
DDX55-209	ENST00000542286	HTR3A	P46098	478 aa		13.99	□□□□□ -0.17
DDX55-209	ENST00000542286	ST3GAL4	Q11206	333 aa		13.99	□□□□□ -0.17
DDX55-209	ENST00000542286	PIN1	Q13526	163 aa	Predicted RBP	13.99	□□□□□ -0.17
DDX55-209	ENST00000542286	RUNX3	Q13761	415 aa		13.99	□□□□□ -0.17
DDX55-209	ENST00000542286	PDGFRL	Q15198	375 aa		13.99	□□□□□ -0.17
DDX55-209	ENST00000542286	CST6	Q15828	149 aa		13.99	□□□□□ -0.17
DDX55-209	ENST00000542286	ZFP69	Q49AA0	526 aa		13.99	□□□□□ -0.17
DDX55-209	ENST00000542286	WDR45B	Q5MNZ6	344 aa		13.99	□□□□□ -0.17
DDX55-209	ENST00000542286	ZNF765	Q7L2R6	523 aa		13.99	□□□□□ -0.17
DDX55-209	ENST00000542286	DNAJC22	Q8N4W6	341 aa		13.99	□□□□□ -0.17
DDX55-209	ENST00000542286	FBXL6	Q8N531	539 aa		13.99	□□□□□ -0.17
DDX55-209	ENST00000542286	IQCF1	Q8N6M8	205 aa		13.99	□□□□□ -0.17
DDX55-209	ENST00000542286	FGF14	Q92915	247 aa		13.99	□□□□□ -0.17
DDX55-209	ENST00000542286	COL21A1	Q96P44	957 aa		13.99	□□□□□ -0.17
DDX55-209	ENST00000542286	OR5M11	Q96RB7	305 aa		13.99	□□□□□ -0.17
DDX55-209	ENST00000542286	AIF1L	Q9BQI0	150 aa		13.99	□□□□□ -0.17
DDX55-209	ENST00000542286	DPH7	Q9BTV6	452 aa		13.99	□□□□□ -0.17
DDX55-209	ENST00000542286	TRMT61B	Q9BVS5	477 aa	Known RBP	13.99	□□□□□ -0.17
DDX55-209	ENST00000542286	TMEM38A	Q9H6F2	299 aa		13.99	□□□□□ -0.17
DDX55-209	ENST00000542286	WDR26	Q9H7D7	661 aa		13.99	□□□□□ -0.17
DDX55-209	ENST00000542286	SDK1	Q7Z5N4	2213 aa		13.99	□□□□□ -0.17
DDX55-209	ENST00000542286	NDUFS4	O43181	175 aa		13.98	□□□□□ -0.17
DDX55-209	ENST00000542286	ZW10	O43264	779 aa		13.98	□□□□□ -0.17
DDX55-209	ENST00000542286	FRS3	O43559	492 aa		13.98	□□□□□ -0.17
DDX55-209	ENST00000542286	CRYZL1	O95825	349 aa		13.98	□□□□□ -0.17
DDX55-209	ENST00000542286	APOA1	P02647	267 aa		13.98	□□□□□ -0.17
DDX55-209	ENST00000542286	RNF144A	P50876	292 aa	Predicted RBP	13.98	□□□□□ -0.17
DDX55-209	ENST00000542286	CCR8	P51685	355 aa		13.98	□□□□□ -0.17
DDX55-209	ENST00000542286	TUBA1B	P68363	451 aa		13.98	□□□□□ -0.17
DDX55-209	ENST00000542286	CSNK1G2	P78368	415 aa		13.98	□□□□□ -0.17
DDX55-209	ENST00000542286	FADD	Q13158	208 aa		13.98	□□□□□ -0.17
DDX55-209	ENST00000542286	ZNF544	Q6NX49	715 aa		13.98	□□□□□ -0.17
DDX55-209	ENST00000542286	UNC5D	Q6UXZ4	953 aa		13.98	□□□□□ -0.17
DDX55-209	ENST00000542286	TUBA1A	Q71U36	451 aa		13.98	□□□□□ -0.17
DDX55-209	ENST00000542286	RD3	Q7Z3Z2	195 aa		13.98	□□□□□ -0.17
DDX55-209	ENST00000542286	B3GNT7	Q8NFL0	401 aa		13.98	□□□□□ -0.17
DDX55-209	ENST00000542286	CXorf40B	Q96DE9	158 aa		13.98	□□□□□ -0.17
DDX55-209	ENST00000542286	DMRTB1	Q96MA1	342 aa		13.98	□□□□□ -0.17
DDX55-209	ENST00000542286	SIGLEC11	Q96RL6	698 aa		13.98	□□□□□ -0.17
DDX55-209	ENST00000542286	MVB12B	Q9H7P6	319 aa		13.98	□□□□□ -0.17
DDX55-209	ENST00000542286	IMPAD1	Q9NX62	359 aa		13.98	□□□□□ -0.17
DDX55-209	ENST00000542286	WBP1L	Q9NX94	342 aa		13.98	□□□□□ -0.17
DDX55-209	ENST00000542286	QPCTL	Q9NXS2	382 aa		13.98	□□□□□ -0.17
DDX55-209	ENST00000542286	CRNN	Q9UBG3	495 aa	Predicted RBP	13.98	□□□□□ -0.17
DDX55-209	ENST00000542286	PSORS1C1	Q9UIG5	152 aa		13.98	□□□□□ -0.17
DDX55-209	ENST00000542286	FBXW2	Q9UKT8	454 aa		13.98	□□□□□ -0.17
DDX55-209	ENST00000542286	MN1	Q10571	1320 aa	Predicted RBP	13.98	□□□□□ -0.17
DDX55-209	ENST00000542286	CLDN24	A6NM45	220 aa		13.98	□□□□□ -0.17
DDX55-209	ENST00000542286		A8MV72	311 aa	Predicted RBP	13.98	□□□□□ -0.17
DDX55-209	ENST00000542286	AGRP	O00253	132 aa		13.98	□□□□□ -0.17
DDX55-209	ENST00000542286	EML2	O95834	649 aa		13.98	□□□□□ -0.17
DDX55-209	ENST00000542286	DNTT	P04053	509 aa		13.98	□□□□□ -0.17
DDX55-209	ENST00000542286	IFNW1	P05000	195 aa		13.98	□□□□□ -0.17
DDX55-209	ENST00000542286	CHRM5	P08912	532 aa	Predicted RBP	13.98	□□□□□ -0.17
DDX55-209	ENST00000542286	UQCRC2	P22695	453 aa		13.98	□□□□□ -0.17
DDX55-209	ENST00000542286	CHM	P24386	653 aa		13.98	□□□□□ -0.17
DDX55-209	ENST00000542286	ZNF45	Q02386	682 aa		13.98	□□□□□ -0.17
DDX55-209	ENST00000542286	KRR1	Q13601	381 aa	Known RBP	13.98	□□□□□ -0.17
DDX55-209	ENST00000542286	TIGD6	Q17RP2	521 aa		13.98	□□□□□ -0.17
DDX55-209	ENST00000542286	CRB2	Q5IJ48	1285 aa		13.98	□□□□□ -0.17
DDX55-209	ENST00000542286	REEP3	Q6NUK4	255 aa		13.98	□□□□□ -0.17
DDX55-209	ENST00000542286	GALNT12	Q8IXK2	581 aa		13.98	□□□□□ -0.17

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