RNA–Protein interactions for RNA: ENST00000542033.5

USP28-210, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 852 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-210ENST00000542033 SMIM31A0A1B0GVY4 71 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 OR6C74A6NCV1 312 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 EFCAB10A6NFE3 127 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 ANKRD61A6NGH8 418 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 CASTOR2A6NHX0 329 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 TMEM150CB9EJG8 249 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 ANKRD65E5RJM6 399 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 E9PBE3 544 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 H0YIV9 168 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 ZNF197O14709 1029 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 PFDN6O15212 129 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 SLC22A2O15244 555 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 SNX3O60493 162 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 PRAF2O60831 178 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 NME6O75414 186 aaPredicted RBP2.9□□□□□ -1.95
USP28-210ENST00000542033 TOM1L1O75674 476 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 PDE5AO76074 875 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 UFL1O94874 794 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 GAS8-AS1O95177 125 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 GAS8O95995 478 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 CLPTM1O96005 669 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 GSRP00390 522 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 NGFP01138 241 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 IGHV4-59P01825 116 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 HEXBP07686 556 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 HMBSP08397 361 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 ABHD2P08910 425 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 CD48P09326 243 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 ANKRD34CP0C6C1 535 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 RNF224P0DH78 156 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 SMIM18P0DKX4 95 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 PDHBP11177 359 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 ANPEPP15144 967 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 CYP2A7P20853 494 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 CDH3P22223 829 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 AHCYP23526 432 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 PIK3R1P27986 724 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 GNA11P29992 359 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 MNDAP41218 407 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 GSSP48637 474 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 CLCN4P51793 760 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 NR0B1P51843 470 aaKnown RBP2.9□□□□□ -1.95
USP28-210ENST00000542033 HNRNPFP52597 415 aaKnown RBP2.9□□□□□ -1.95
USP28-210ENST00000542033 ATXN3P54252 364 aaPredicted RBP2.9□□□□□ -1.95
USP28-210ENST00000542033 UCP2P55851 309 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 ATP6V0D1P61421 351 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 PSMC5P62195 406 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 UBE2HP62256 183 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 ELF3P78545 371 aaPredicted RBP2.9□□□□□ -1.95
USP28-210ENST00000542033 CDR2Q01850 454 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 ZNF33BQ06732 778 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 GPR17Q13304 367 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 TRA2AQ13595 282 aaKnown RBP eCLIP2.9□□□□□ -1.95
USP28-210ENST00000542033 TSTA3Q13630 321 aaPredicted RBP2.9□□□□□ -1.95
USP28-210ENST00000542033 GAMTQ14353 236 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 PDK1Q15118 436 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 CA9Q16790 459 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 TMEM30BQ3MIR4 351 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 HERC4Q5GLZ8 1057 aaPredicted RBP2.9□□□□□ -1.95
USP28-210ENST00000542033 PRAMEF8Q5VWM4 474 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 ARHGAP17Q68EM7 881 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 KCTD11Q693B1 232 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 PM20D1Q6GTS8 502 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 ERICH5Q6P6B1 374 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 ZNF790Q6PG37 636 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 TRIM65Q6PJ69 517 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 C4orf22Q6V702 233 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 TRPM8Q7Z2W7 1104 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 ANKRD46Q86W74 232 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 MEX3DQ86XN8 651 aaKnown RBP2.9□□□□□ -1.95
USP28-210ENST00000542033 TMEM139Q8IV31 216 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 MMAAQ8IVH4 418 aaKnown RBP2.9□□□□□ -1.95
USP28-210ENST00000542033 LRRC8AQ8IWT6 810 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 AQP12AQ8IXF9 295 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 IFT20Q8IY31 132 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 ZBED8Q8IZ13 594 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 KIRREL3Q8IZU9 778 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 ELMOD1Q8N336 334 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 BBS5Q8N3I7 341 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 ARL14Q8N4G2 192 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 BMPERQ8N8U9 685 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 NPEPL1Q8NDH3 523 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 FGFBP3Q8TAT2 258 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 GRHL3Q8TE85 626 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 PRCCQ92733 491 aaPredicted RBP2.9□□□□□ -1.95
USP28-210ENST00000542033 RMND5BQ96G75 393 aaPredicted RBP2.9□□□□□ -1.95
USP28-210ENST00000542033 LRR1Q96L50 414 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 FAM111AQ96PZ2 611 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 C17orf62Q9BQA9 187 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 URM1Q9BTM9 101 aaKnown RBP2.9□□□□□ -1.95
USP28-210ENST00000542033 FUCA2Q9BTY2 467 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 RBM4Q9BWF3 364 aaKnown RBP2.9□□□□□ -1.95
USP28-210ENST00000542033 CDK19Q9BWU1 502 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 CARD6Q9BX69 1037 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 SPATA16Q9BXB7 569 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 CALN1Q9BXU9 219 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 SLC2A11Q9BYW1 496 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 CCSER1Q9C0I3 900 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 NAPBQ9H115 298 aa2.9□□□□□ -1.95
USP28-210ENST00000542033 P2RY12Q9H244 342 aa2.9□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 70.2 ms