RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 EBPLQ9BY08 206 aa12.03□□□□□ -0.48
VPS28-216ENST00000533806 STMN4Q9H169 189 aaPredicted RBP12.03□□□□□ -0.48
VPS28-216ENST00000533806 LRTM1Q9HBL6 345 aa12.03□□□□□ -0.48
VPS28-216ENST00000533806 KCNK9Q9NPC2 374 aa12.03□□□□□ -0.48
VPS28-216ENST00000533806 MYNNQ9NPC7 610 aa12.03□□□□□ -0.48
VPS28-216ENST00000533806 COPS7AQ9UBW8 275 aa12.03□□□□□ -0.48
VPS28-216ENST00000533806 PSME2Q9UL46 239 aa12.03□□□□□ -0.48
VPS28-216ENST00000533806 ERVK-19Q9WJR5 959 aa12.03□□□□□ -0.48
VPS28-216ENST00000533806 COL12A1Q99715 3063 aa12.02□□□□□ -0.49
VPS28-216ENST00000533806 TMEM120BA0PK00 339 aa12.02□□□□□ -0.49
VPS28-216ENST00000533806 WDR91A4D1P6 747 aa12.02□□□□□ -0.49
VPS28-216ENST00000533806 ASPDHA6ND91 283 aa12.02□□□□□ -0.49
VPS28-216ENST00000533806 GOLGA6L10A6NI86 522 aa12.02□□□□□ -0.49
VPS28-216ENST00000533806 OR6C76A6NM76 312 aa12.02□□□□□ -0.49
VPS28-216ENST00000533806 TMEM114B3SHH9 223 aa12.02□□□□□ -0.49
VPS28-216ENST00000533806 WWP2O00308 870 aa12.02□□□□□ -0.49
VPS28-216ENST00000533806 RGS14O43566 566 aa12.02□□□□□ -0.49
VPS28-216ENST00000533806 DYRK3O43781 588 aa12.02□□□□□ -0.49
VPS28-216ENST00000533806 NME2P1O60361 137 aa12.02□□□□□ -0.49
VPS28-216ENST00000533806 SEC22BO75396 215 aa12.02□□□□□ -0.49
VPS28-216ENST00000533806 LYPLA1O75608 230 aaPredicted RBP12.02□□□□□ -0.49
VPS28-216ENST00000533806 ERAL1O75616 437 aaKnown RBP12.02□□□□□ -0.49
VPS28-216ENST00000533806 NEFHP12036 1026 aa12.02□□□□□ -0.49
VPS28-216ENST00000533806 DDCP20711 480 aa12.02□□□□□ -0.49
VPS28-216ENST00000533806 NME2P22392 152 aa12.02□□□□□ -0.49
VPS28-216ENST00000533806 SSTR4P31391 388 aa12.02□□□□□ -0.49
VPS28-216ENST00000533806 FEN1P39748 380 aaKnown RBP12.02□□□□□ -0.49
VPS28-216ENST00000533806 SSR4P51571 173 aa12.02□□□□□ -0.49
VPS28-216ENST00000533806 MAGOHP61326 146 aaKnown RBP12.02□□□□□ -0.49
VPS28-216ENST00000533806 OC90Q02509 493 aaPredicted RBP12.02□□□□□ -0.49
VPS28-216ENST00000533806 KCNC4Q03721 635 aa12.02□□□□□ -0.49
VPS28-216ENST00000533806 DUSP8Q13202 625 aa12.02□□□□□ -0.49
VPS28-216ENST00000533806 EBPQ15125 230 aaKnown RBP12.02□□□□□ -0.49
VPS28-216ENST00000533806 FAM180BQ6P0A1 224 aa12.02□□□□□ -0.49
VPS28-216ENST00000533806 IKBIPQ70UQ0 350 aa12.02□□□□□ -0.49
VPS28-216ENST00000533806 MDGA2Q7Z553 956 aa12.02□□□□□ -0.49
VPS28-216ENST00000533806 GALNT12Q8IXK2 581 aa12.02□□□□□ -0.49
VPS28-216ENST00000533806 HORMAD2Q8N7B1 307 aa12.02□□□□□ -0.49
VPS28-216ENST00000533806 SUN3Q8TAQ9 357 aa12.02□□□□□ -0.49
VPS28-216ENST00000533806 ARL8AQ96BM9 186 aa12.02□□□□□ -0.49
VPS28-216ENST00000533806 EGLN2Q96KS0 407 aa12.02□□□□□ -0.49
VPS28-216ENST00000533806 C3orf30Q96M34 536 aa12.02□□□□□ -0.49
VPS28-216ENST00000533806 SORT1Q99523 831 aa12.02□□□□□ -0.49
VPS28-216ENST00000533806 CNPPD1Q9BV87 410 aa12.02□□□□□ -0.49
VPS28-216ENST00000533806 SLC35C2Q9NQQ7 365 aa12.02□□□□□ -0.49
VPS28-216ENST00000533806 MAT2BQ9NZL9 334 aa12.02□□□□□ -0.49
VPS28-216ENST00000533806 MAP10Q9P2G4 905 aa12.02□□□□□ -0.49
VPS28-216ENST00000533806 UTS2RQ9UKP6 389 aa12.02□□□□□ -0.49
VPS28-216ENST00000533806 EPB41L3Q9Y2J2 1087 aaPredicted RBP12.02□□□□□ -0.49
VPS28-216ENST00000533806 FIS1Q9Y3D6 152 aa12.02□□□□□ -0.49
VPS28-216ENST00000533806 POLR3HQ9Y535 204 aaPredicted RBP12.02□□□□□ -0.49
VPS28-216ENST00000533806 VPS4BO75351 444 aa12.01□□□□□ -0.49
VPS28-216ENST00000533806 SLC25A12O75746 678 aa12.01□□□□□ -0.49
VPS28-216ENST00000533806 WISP2O76076 250 aa12.01□□□□□ -0.49
VPS28-216ENST00000533806 OR6B1O95007 311 aa12.01□□□□□ -0.49
VPS28-216ENST00000533806 SNUPNO95149 360 aaKnown RBP12.01□□□□□ -0.49
VPS28-216ENST00000533806 RASAL1O95294 804 aa12.01□□□□□ -0.49
VPS28-216ENST00000533806 CBX7O95931 251 aa12.01□□□□□ -0.49
VPS28-216ENST00000533806 CHEK2O96017 543 aa12.01□□□□□ -0.49
VPS28-216ENST00000533806 JUNP05412 331 aaKnown RBP12.01□□□□□ -0.49
VPS28-216ENST00000533806 CD46P15529 392 aa12.01□□□□□ -0.49
VPS28-216ENST00000533806 SDC1P18827 310 aa12.01□□□□□ -0.49
VPS28-216ENST00000533806 GNLYP22749 145 aa12.01□□□□□ -0.49
VPS28-216ENST00000533806 GRK2P25098 689 aa12.01□□□□□ -0.49
VPS28-216ENST00000533806 SOX3P41225 446 aa12.01□□□□□ -0.49
VPS28-216ENST00000533806 UQCRFS1P47985 274 aa12.01□□□□□ -0.49
VPS28-216ENST00000533806 ALDH9A1P49189 494 aa12.01□□□□□ -0.49
VPS28-216ENST00000533806 TDGF1P3P51864 188 aa12.01□□□□□ -0.49
VPS28-216ENST00000533806 ABCE1P61221 599 aaKnown RBP12.01□□□□□ -0.49
VPS28-216ENST00000533806 SRSF1Q07955 248 aaKnown RBP eCLIP12.01□□□□□ -0.49
VPS28-216ENST00000533806 ZNF791Q3KP31 576 aaPredicted RBP12.01□□□□□ -0.49
VPS28-216ENST00000533806 FAM111BQ6SJ93 734 aa12.01□□□□□ -0.49
VPS28-216ENST00000533806 ATCAYQ86WG3 371 aa12.01□□□□□ -0.49
VPS28-216ENST00000533806 GPALPP1Q8IXQ4 340 aa12.01□□□□□ -0.49
VPS28-216ENST00000533806 LRRC25Q8N386 305 aaPredicted RBP12.01□□□□□ -0.49
VPS28-216ENST00000533806 SIMC1Q8NDZ2 872 aa12.01□□□□□ -0.49
VPS28-216ENST00000533806 OR7G1Q8NGA0 311 aa12.01□□□□□ -0.49
VPS28-216ENST00000533806 DNAJB8Q8NHS0 232 aa12.01□□□□□ -0.49
VPS28-216ENST00000533806 ZNF675Q8TD23 568 aa12.01□□□□□ -0.49
VPS28-216ENST00000533806 ADIPOR1Q96A54 375 aa12.01□□□□□ -0.49
VPS28-216ENST00000533806 TP53INP1Q96A56 240 aa12.01□□□□□ -0.49
VPS28-216ENST00000533806 KLHL29Q96CT2 875 aa12.01□□□□□ -0.49
VPS28-216ENST00000533806 ZNF764Q96H86 408 aaPredicted RBP12.01□□□□□ -0.49
VPS28-216ENST00000533806 CCT7Q99832 543 aa12.01□□□□□ -0.49
VPS28-216ENST00000533806 WWTR1Q9GZV5 400 aa12.01□□□□□ -0.49
VPS28-216ENST00000533806 SH2D2AQ9NP31 389 aa12.01□□□□□ -0.49
VPS28-216ENST00000533806 AGPAT4Q9NRZ5 378 aa12.01□□□□□ -0.49
VPS28-216ENST00000533806 RYDENQ9NUL5 291 aaKnown RBP12.01□□□□□ -0.49
VPS28-216ENST00000533806 SDAD1Q9NVU7 687 aaKnown RBP eCLIP12.01□□□□□ -0.49
VPS28-216ENST00000533806 VPS4AQ9UN37 437 aa12.01□□□□□ -0.49
VPS28-216ENST00000533806 TMED5Q9Y3A6 229 aa12.01□□□□□ -0.49
VPS28-216ENST00000533806 ZNF780BQ9Y6R6 833 aa12.01□□□□□ -0.49
VPS28-216ENST00000533806 POLEQ07864 2286 aa12□□□□□ -0.49
VPS28-216ENST00000533806 MYO1GB0I1T2 1018 aa12□□□□□ -0.49
VPS28-216ENST00000533806 TBX19O60806 448 aa12□□□□□ -0.49
VPS28-216ENST00000533806 NT5EP21589 574 aa12□□□□□ -0.49
VPS28-216ENST00000533806 BGNP21810 368 aa12□□□□□ -0.49
VPS28-216ENST00000533806 MST1P26927 711 aa12□□□□□ -0.49
VPS28-216ENST00000533806 PTGER1P34995 402 aa12□□□□□ -0.49
VPS28-216ENST00000533806 SLC1A6P48664 564 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms