RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 RGSL1A5PLK6 1076 aa3.63□□□□□ -1.83
CD44-223ENST00000526553 TRIM49BA6NDI0 452 aa3.63□□□□□ -1.83
CD44-223ENST00000526553 SERINC4A6NH21 518 aa3.63□□□□□ -1.83
CD44-223ENST00000526553 CCSO14618 274 aa3.63□□□□□ -1.83
CD44-223ENST00000526553 FGF19O95750 216 aa3.63□□□□□ -1.83
CD44-223ENST00000526553 TGFAP01135 160 aa3.63□□□□□ -1.83
CD44-223ENST00000526553 EPOP01588 193 aa3.63□□□□□ -1.83
CD44-223ENST00000526553 HEXBP07686 556 aa3.63□□□□□ -1.83
CD44-223ENST00000526553 APRTP07741 180 aa3.63□□□□□ -1.83
CD44-223ENST00000526553 GP9P14770 177 aa3.63□□□□□ -1.83
CD44-223ENST00000526553 CD1DP15813 335 aa3.63□□□□□ -1.83
CD44-223ENST00000526553 DNAJB1P25685 340 aa3.63□□□□□ -1.83
CD44-223ENST00000526553 RPL9P32969 192 aaKnown RBP3.63□□□□□ -1.83
CD44-223ENST00000526553 CAMLGP49069 296 aa3.63□□□□□ -1.83
CD44-223ENST00000526553 TNFSF10P50591 281 aa3.63□□□□□ -1.83
CD44-223ENST00000526553 CCR4P51679 360 aa3.63□□□□□ -1.83
CD44-223ENST00000526553 POLR2FP61218 127 aaKnown RBP3.63□□□□□ -1.83
CD44-223ENST00000526553 ACY1Q03154 408 aa3.63□□□□□ -1.83
CD44-223ENST00000526553 GPR50Q13585 617 aa3.63□□□□□ -1.83
CD44-223ENST00000526553 CEACAM7Q14002 265 aa3.63□□□□□ -1.83
CD44-223ENST00000526553 KRT31Q15323 416 aa3.63□□□□□ -1.83
CD44-223ENST00000526553 PRAMEF7Q5VXH5 474 aa3.63□□□□□ -1.83
CD44-223ENST00000526553 SNRNP48Q6IEG0 339 aaKnown RBP3.63□□□□□ -1.83
CD44-223ENST00000526553 OR6B2Q6IFH4 312 aa3.63□□□□□ -1.83
CD44-223ENST00000526553 C17orf107Q6ZR85 190 aa3.63□□□□□ -1.83
CD44-223ENST00000526553 MCM10Q7L590 875 aa3.63□□□□□ -1.83
CD44-223ENST00000526553 RPAINQ86UA6 219 aa3.63□□□□□ -1.83
CD44-223ENST00000526553 ELMOD1Q8N336 334 aa3.63□□□□□ -1.83
CD44-223ENST00000526553 ZBTB44Q8NCP5 570 aa3.63□□□□□ -1.83
CD44-223ENST00000526553 TRPV3Q8NET8 790 aa3.63□□□□□ -1.83
CD44-223ENST00000526553 UBTD2Q8WUN7 234 aa3.63□□□□□ -1.83
CD44-223ENST00000526553 GLYATL1Q969I3 302 aa3.63□□□□□ -1.83
CD44-223ENST00000526553 MRPL38Q96DV4 380 aaKnown RBP3.63□□□□□ -1.83
CD44-223ENST00000526553 ALKBH3Q96Q83 286 aaPredicted RBP3.63□□□□□ -1.83
CD44-223ENST00000526553 S1PR3Q99500 378 aa3.63□□□□□ -1.83
CD44-223ENST00000526553 NTMT1Q9BV86 223 aa3.63□□□□□ -1.83
CD44-223ENST00000526553 NUSAP1Q9BXS6 441 aaKnown RBP3.63□□□□□ -1.83
CD44-223ENST00000526553 RAB17Q9H0T7 212 aa3.63□□□□□ -1.83
CD44-223ENST00000526553 ABCG4Q9H172 646 aa3.63□□□□□ -1.83
CD44-223ENST00000526553 SH3BGRL2Q9UJC5 107 aa3.63□□□□□ -1.83
CD44-223ENST00000526553 BLOC1S6Q9UL45 172 aa3.63□□□□□ -1.83
CD44-223ENST00000526553 KIAA1217Q5T5P2 1943 aa3.63□□□□□ -1.83
CD44-223ENST00000526553 IGLV3-10A0A075B6K4 115 aa3.62□□□□□ -1.83
CD44-223ENST00000526553 IGKV6D-41A0A0C4DH26 115 aa3.62□□□□□ -1.83
CD44-223ENST00000526553 ATP6AP2A0A1C7CYW4 349 aa3.62□□□□□ -1.83
CD44-223ENST00000526553 ZNF840PA6NDX5 716 aa3.62□□□□□ -1.83
CD44-223ENST00000526553 EEF2KO00418 725 aaKnown RBP3.62□□□□□ -1.83
CD44-223ENST00000526553 PHF1O43189 567 aaPredicted RBP3.62□□□□□ -1.83
CD44-223ENST00000526553 SH3BGRLO75368 114 aa3.62□□□□□ -1.83
CD44-223ENST00000526553 GMNNO75496 209 aa3.62□□□□□ -1.83
CD44-223ENST00000526553 STBD1O95210 358 aa3.62□□□□□ -1.83
CD44-223ENST00000526553 CPNE6O95741 557 aa3.62□□□□□ -1.83
CD44-223ENST00000526553 IGHG1P01857 330 aa3.62□□□□□ -1.83
CD44-223ENST00000526553 CHRNGP07510 517 aa3.62□□□□□ -1.83
CD44-223ENST00000526553 MELTFP08582 738 aa3.62□□□□□ -1.83
CD44-223ENST00000526553 NUDT17P0C025 328 aa3.62□□□□□ -1.83
CD44-223ENST00000526553 ODC1P11926 461 aa3.62□□□□□ -1.83
CD44-223ENST00000526553 ACKR3P25106 362 aa3.62□□□□□ -1.83
CD44-223ENST00000526553 GSK3BP49841 420 aa3.62□□□□□ -1.83
CD44-223ENST00000526553 ZNF131P52739 623 aa3.62□□□□□ -1.83
CD44-223ENST00000526553 BACE1P56817 501 aa3.62□□□□□ -1.83
CD44-223ENST00000526553 SPHARQ15513 63 aa3.62□□□□□ -1.83
CD44-223ENST00000526553 CARTPTQ16568 116 aa3.62□□□□□ -1.83
CD44-223ENST00000526553 POM121L1PQ3SYA9 428 aa3.62□□□□□ -1.83
CD44-223ENST00000526553 RFTN2Q52LD8 501 aaPredicted RBP3.62□□□□□ -1.83
CD44-223ENST00000526553 AGAP7PQ5VUJ5 663 aa3.62□□□□□ -1.83
CD44-223ENST00000526553 RAET1GQ6H3X3 334 aa3.62□□□□□ -1.83
CD44-223ENST00000526553 UNC5DQ6UXZ4 953 aa3.62□□□□□ -1.83
CD44-223ENST00000526553 WDR88Q6ZMY6 472 aa3.62□□□□□ -1.83
CD44-223ENST00000526553 RFPL4BQ6ZWI9 263 aa3.62□□□□□ -1.83
CD44-223ENST00000526553 SYVN1Q86TM6 617 aa3.62□□□□□ -1.83
CD44-223ENST00000526553 HSCBQ8IWL3 235 aa3.62□□□□□ -1.83
CD44-223ENST00000526553 SLC43A2Q8N370 569 aa3.62□□□□□ -1.83
CD44-223ENST00000526553 OR13C5Q8NGS8 318 aa3.62□□□□□ -1.83
CD44-223ENST00000526553 OR6F1Q8NGZ6 308 aa3.62□□□□□ -1.83
CD44-223ENST00000526553 ZPLD1Q8TCW7 415 aa3.62□□□□□ -1.83
CD44-223ENST00000526553 SYAP1Q96A49 352 aaPredicted RBP3.62□□□□□ -1.83
CD44-223ENST00000526553 BPIFA2Q96DR5 249 aa3.62□□□□□ -1.83
CD44-223ENST00000526553 GPR137Q96N19 417 aa3.62□□□□□ -1.83
CD44-223ENST00000526553 SSX3Q99909 188 aa3.62□□□□□ -1.83
CD44-223ENST00000526553 LRRCC1Q9C099 1032 aa3.62□□□□□ -1.83
CD44-223ENST00000526553 MTIF3Q9H2K0 278 aaKnown RBP3.62□□□□□ -1.83
CD44-223ENST00000526553 DCLRE1BQ9H816 532 aa3.62□□□□□ -1.83
CD44-223ENST00000526553 LIN28AQ9H9Z2 209 aaKnown RBP3.62□□□□□ -1.83
CD44-223ENST00000526553 WDR41Q9HAD4 459 aa3.62□□□□□ -1.83
CD44-223ENST00000526553 NGBQ9NPG2 151 aa3.62□□□□□ -1.83
CD44-223ENST00000526553 DEPPQ9NTK1 212 aa3.62□□□□□ -1.83
CD44-223ENST00000526553 THYN1Q9P016 225 aa3.62□□□□□ -1.83
CD44-223ENST00000526553 ZNF581Q9P0T4 197 aa3.62□□□□□ -1.83
CD44-223ENST00000526553 FAM153AQ9UHL3 310 aa3.62□□□□□ -1.83
CD44-223ENST00000526553 NARFQ9UHQ1 456 aa3.62□□□□□ -1.83
CD44-223ENST00000526553 PSORS1C1Q9UIG5 152 aa3.62□□□□□ -1.83
CD44-223ENST00000526553 KIF3AQ9Y496 699 aa3.62□□□□□ -1.83
CD44-223ENST00000526553 ETV7Q9Y603 341 aa3.62□□□□□ -1.83
CD44-223ENST00000526553 AP1M2Q9Y6Q5 423 aa3.62□□□□□ -1.83
CD44-223ENST00000526553 ATP8B3O60423 1300 aa3.62□□□□□ -1.83
CD44-223ENST00000526553 FAM205AQ6ZU69 1335 aa3.62□□□□□ -1.83
CD44-223ENST00000526553 ARHGEF11O15085 1522 aa3.61□□□□□ -1.83
CD44-223ENST00000526553 MROH2BQ7Z745 1585 aa3.61□□□□□ -1.83
CD44-223ENST00000526553 BCLAF3A2AJT9 711 aaKnown RBP3.61□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms