RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 ALKQ9UM73 1620 aa3.19□□□□□ -1.9
CD44-217ENST00000525348 IGHV4-30-2A0A087WSY4 118 aa3.19□□□□□ -1.9
CD44-217ENST00000525348 C15orf38-AP3S2A0A0A6YYH1 394 aa3.19□□□□□ -1.9
CD44-217ENST00000525348 LRRD1A4D1F6 860 aa3.19□□□□□ -1.9
CD44-217ENST00000525348 LRRIQ3A6PVS8 624 aaPredicted RBP3.19□□□□□ -1.9
CD44-217ENST00000525348 A8MX80 341 aa3.19□□□□□ -1.9
CD44-217ENST00000525348 A8MXK9 166 aa3.19□□□□□ -1.9
CD44-217ENST00000525348 GOLGA8SH3BPF8 625 aa3.19□□□□□ -1.9
CD44-217ENST00000525348 TFECO14948 347 aaPredicted RBP3.19□□□□□ -1.9
CD44-217ENST00000525348 TXNL1O43396 289 aa3.19□□□□□ -1.9
CD44-217ENST00000525348 BCL2L11O43521 198 aa3.19□□□□□ -1.9
CD44-217ENST00000525348 SERPINB7O75635 380 aa3.19□□□□□ -1.9
CD44-217ENST00000525348 OXSR1O95747 527 aaPredicted RBP3.19□□□□□ -1.9
CD44-217ENST00000525348 HPRP00739 348 aa3.19□□□□□ -1.9
CD44-217ENST00000525348 SERPINF2P08697 491 aa3.19□□□□□ -1.9
CD44-217ENST00000525348 CALM1P0DP23 149 aa3.19□□□□□ -1.9
CD44-217ENST00000525348 CALM2P0DP24 149 aa3.19□□□□□ -1.9
CD44-217ENST00000525348 CALM3P0DP25 149 aa3.19□□□□□ -1.9
CD44-217ENST00000525348 F3P13726 295 aa3.19□□□□□ -1.9
CD44-217ENST00000525348 CD59P13987 128 aa3.19□□□□□ -1.9
CD44-217ENST00000525348 MYOGP15173 224 aa3.19□□□□□ -1.9
CD44-217ENST00000525348 GAP43P17677 238 aa3.19□□□□□ -1.9
CD44-217ENST00000525348 ARF4P18085 180 aaPredicted RBP3.19□□□□□ -1.9
CD44-217ENST00000525348 BCL3P20749 454 aa3.19□□□□□ -1.9
CD44-217ENST00000525348 CASTP20810 708 aaKnown RBP3.19□□□□□ -1.9
CD44-217ENST00000525348 SYT1P21579 422 aa3.19□□□□□ -1.9
CD44-217ENST00000525348 ACAT1P24752 427 aaKnown RBP3.19□□□□□ -1.9
CD44-217ENST00000525348 ALDH3A1P30838 453 aa3.19□□□□□ -1.9
CD44-217ENST00000525348 DUTP33316 252 aaKnown RBP3.19□□□□□ -1.9
CD44-217ENST00000525348 SLC26A3P40879 764 aa3.19□□□□□ -1.9
CD44-217ENST00000525348 HSPA13P48723 471 aa3.19□□□□□ -1.9
CD44-217ENST00000525348 VCPP55072 806 aaKnown RBP3.19□□□□□ -1.9
CD44-217ENST00000525348 DLK1P80370 383 aa3.19□□□□□ -1.9
CD44-217ENST00000525348 NCF4Q15080 339 aa3.19□□□□□ -1.9
CD44-217ENST00000525348 ALX1Q15699 326 aa3.19□□□□□ -1.9
CD44-217ENST00000525348 AANATQ16613 207 aa3.19□□□□□ -1.9
CD44-217ENST00000525348 PTGISQ16647 500 aa3.19□□□□□ -1.9
CD44-217ENST00000525348 HSP90AA4PQ58FG1 418 aa3.19□□□□□ -1.9
CD44-217ENST00000525348 KRT39Q6A163 491 aa3.19□□□□□ -1.9
CD44-217ENST00000525348 TTC23LQ6PF05 361 aa3.19□□□□□ -1.9
CD44-217ENST00000525348 LCLAT1Q6UWP7 414 aa3.19□□□□□ -1.9
CD44-217ENST00000525348 KDM7AQ6ZMT4 941 aa3.19□□□□□ -1.9
CD44-217ENST00000525348 RGS9BPQ6ZS82 235 aa3.19□□□□□ -1.9
CD44-217ENST00000525348 CHMP1BQ7LBR1 199 aa3.19□□□□□ -1.9
CD44-217ENST00000525348 CPEB2Q7Z5Q1 589 aaKnown RBP3.19□□□□□ -1.9
CD44-217ENST00000525348 AKAP14Q86UN6 197 aa3.19□□□□□ -1.9
CD44-217ENST00000525348 FAM228AQ86W67 206 aa3.19□□□□□ -1.9
CD44-217ENST00000525348 FAM131BQ86XD5 332 aa3.19□□□□□ -1.9
CD44-217ENST00000525348 HPS6Q86YV9 775 aa3.19□□□□□ -1.9
CD44-217ENST00000525348 CLVS1Q8IUQ0 354 aaPredicted RBP3.19□□□□□ -1.9
CD44-217ENST00000525348 ARL14Q8N4G2 192 aa3.19□□□□□ -1.9
CD44-217ENST00000525348 CCNYL1Q8N7R7 359 aa3.19□□□□□ -1.9
CD44-217ENST00000525348 TDRD5Q8NAT2 981 aaKnown RBP3.19□□□□□ -1.9
CD44-217ENST00000525348 OR7G1Q8NGA0 311 aa3.19□□□□□ -1.9
CD44-217ENST00000525348 OR10Z1Q8NGY1 313 aa3.19□□□□□ -1.9
CD44-217ENST00000525348 OR8K3Q8NH51 312 aa3.19□□□□□ -1.9
CD44-217ENST00000525348 ENKURQ8TC29 256 aa3.19□□□□□ -1.9
CD44-217ENST00000525348 TSACCQ96A04 125 aaPredicted RBP3.19□□□□□ -1.9
CD44-217ENST00000525348 LGMNQ99538 433 aa3.19□□□□□ -1.9
CD44-217ENST00000525348 CALN1Q9BXU9 219 aa3.19□□□□□ -1.9
CD44-217ENST00000525348 TXLNGYQ9BZA5 131 aa3.19□□□□□ -1.9
CD44-217ENST00000525348 KRT23Q9C075 422 aa3.19□□□□□ -1.9
CD44-217ENST00000525348 ANKRD2Q9GZV1 360 aa3.19□□□□□ -1.9
CD44-217ENST00000525348 FZD8Q9H461 694 aa3.19□□□□□ -1.9
CD44-217ENST00000525348 ST6GALNAC4Q9H4F1 302 aa3.19□□□□□ -1.9
CD44-217ENST00000525348 ACTL8Q9H568 366 aa3.19□□□□□ -1.9
CD44-217ENST00000525348 MTHFD2LQ9H903 347 aaPredicted RBP3.19□□□□□ -1.9
CD44-217ENST00000525348 POLE3Q9NRF9 147 aa3.19□□□□□ -1.9
CD44-217ENST00000525348 FAM120CQ9NX05 1096 aaKnown RBP3.19□□□□□ -1.9
CD44-217ENST00000525348 MOSPD1Q9UJG1 213 aa3.19□□□□□ -1.9
CD44-217ENST00000525348 SELENOKQ9Y6D0 94 aa3.19□□□□□ -1.9
CD44-217ENST00000525348 SETBP1Q9Y6X0 1596 aa3.19□□□□□ -1.9
CD44-217ENST00000525348 CTTNBP2Q8WZ74 1663 aa3.19□□□□□ -1.9
CD44-217ENST00000525348 MYO3AQ8NEV4 1616 aa3.19□□□□□ -1.9
CD44-217ENST00000525348 CCDC144AA2RUR9 1427 aa3.19□□□□□ -1.9
CD44-217ENST00000525348 KIF7Q2M1P5 1343 aa3.19□□□□□ -1.9
CD44-217ENST00000525348 ZNF142P52746 1687 aaPredicted RBP3.18□□□□□ -1.9
CD44-217ENST00000525348 ABCA8O94911 1581 aa3.18□□□□□ -1.9
CD44-217ENST00000525348 NEO1Q92859 1461 aa3.18□□□□□ -1.9
CD44-217ENST00000525348 SBNO1A3KN83 1393 aa3.18□□□□□ -1.9
CD44-217ENST00000525348 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP3.18□□□□□ -1.9
CD44-217ENST00000525348 IGHV3-20A0A0C4DH32 117 aa3.18□□□□□ -1.9
CD44-217ENST00000525348 SNTNA6NMZ2 147 aa3.18□□□□□ -1.9
CD44-217ENST00000525348 C17orf105B2RV13 164 aa3.18□□□□□ -1.9
CD44-217ENST00000525348 ANKRD65E5RJM6 399 aa3.18□□□□□ -1.9
CD44-217ENST00000525348 GOLGA8RI6L899 631 aa3.18□□□□□ -1.9
CD44-217ENST00000525348 UBE2CO00762 179 aa3.18□□□□□ -1.9
CD44-217ENST00000525348 XPO1O14980 1071 aaKnown RBP3.18□□□□□ -1.9
CD44-217ENST00000525348 SURF4O15260 269 aa3.18□□□□□ -1.9
CD44-217ENST00000525348 TRAPPC3O43617 180 aa3.18□□□□□ -1.9
CD44-217ENST00000525348 SURF6O75683 361 aaKnown RBP3.18□□□□□ -1.9
CD44-217ENST00000525348 IDH1O75874 414 aaKnown RBP3.18□□□□□ -1.9
CD44-217ENST00000525348 RBBP9O75884 186 aa3.18□□□□□ -1.9
CD44-217ENST00000525348 LCA5LO95447 670 aa3.18□□□□□ -1.9
CD44-217ENST00000525348 S100A9P06702 114 aaKnown RBP3.18□□□□□ -1.9
CD44-217ENST00000525348 ASNSP08243 561 aa3.18□□□□□ -1.9
CD44-217ENST00000525348 HOXD4P09016 255 aaPredicted RBP3.18□□□□□ -1.9
CD44-217ENST00000525348 HOXB8P17481 243 aaPredicted RBP3.18□□□□□ -1.9
CD44-217ENST00000525348 VCLP18206 1134 aa3.18□□□□□ -1.9
CD44-217ENST00000525348 CCNA2P20248 432 aa3.18□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms