RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 BEX2Q9BXY8 128 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 SEMA6AQ9H2E6 1030 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 ZNF221Q9UK13 617 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 MRPS2Q9Y399 296 aaKnown RBP7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 HEATR5BQ9P2D3 2071 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 UTP20O75691 2785 aaKnown RBP7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 ABCA4P78363 2273 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 NUP214P35658 2090 aaPredicted RBP7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 HMX3A6NHT5 357 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 OR6C65A6NJZ3 312 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 NME6O75414 186 aaPredicted RBP7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 TNFAIP8O95379 198 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 LY86O95711 162 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 APOA1P02647 267 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 CLUP10909 449 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 GSTM2P28161 218 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 PEX2P28328 305 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 NDUFS1P28331 727 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 CMPK1P30085 196 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 SPRP35270 261 aaPredicted RBP7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 GRK3P35626 688 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 ABCE1P61221 599 aaKnown RBP7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 SELENBP1Q13228 472 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 LYPLAL1Q5VWZ2 237 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 SLC15A4Q8N697 577 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 PSMA8Q8TAA3 256 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 CT55Q8WUE5 264 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 SNAPC3Q92966 411 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 NKD1Q969G9 470 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 DACH2Q96NX9 599 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 OR2A14Q96R47 310 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 C9orf16Q9BUW7 83 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 MVB12BQ9H7P6 319 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 ZNF275Q9NSD4 429 aaPredicted RBP7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 CROCCQ5TZA2 2017 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 FAM25AB3EWG3 89 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 FAM25CB3EWG5 89 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 FAM25GB3EWG6 89 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 H0YGG7 62 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 QSOX1O00391 747 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 ANGPT2O15123 496 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 PIP5K1CO60331 668 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 RDH16O75452 317 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 TFAP2AP05549 437 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 PEBP1P30086 187 aaKnown RBP7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 CLCN7P51798 805 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 ITGA1P56199 1179 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 ARF3P61204 181 aaPredicted RBP7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 LGALS3BPQ08380 585 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 ABHD18Q0P651 414 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 ILKQ13418 452 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 RBBP7Q16576 425 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 MAPKAPK3Q16644 382 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 HES5Q5TA89 166 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 TIGD3Q6B0B8 471 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 UGT3A1Q6NUS8 523 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 PLD6Q8N2A8 252 aaKnown RBP7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 ANKFN1Q8N957 763 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 PCYOX1LQ8NBM8 494 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 SLC37A3Q8NCC5 494 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 SLC13A3Q8WWT9 602 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 SLC39A7Q92504 469 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 LURAP1Q96LR2 239 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 NRSN2Q9GZP1 204 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 LRMDAQ9H2I8 198 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 ACTR8Q9H981 624 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 EHD3Q9NZN3 535 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 ARMCX1Q9P291 453 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 PACSIN3Q9UKS6 424 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 VPS9D1Q9Y2B5 631 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 DHRS7Q9Y394 339 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 DYRK1BQ9Y463 629 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 SLC22A7Q9Y694 548 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 TRBV5-4A0A0C4DH59 114 aa7.46□□□□□ -1.21
LIMCH1-219ENST00000514096 CXorf51AA0A1B0GTR3 108 aa7.46□□□□□ -1.21
LIMCH1-219ENST00000514096 WASHC1A8K0Z3 465 aa7.46□□□□□ -1.21
LIMCH1-219ENST00000514096 NUDT19A8MXV4 375 aa7.46□□□□□ -1.21
LIMCH1-219ENST00000514096 TMX2-CTNND1H3BSU7 103 aa7.46□□□□□ -1.21
LIMCH1-219ENST00000514096 EFSO43281 561 aa7.46□□□□□ -1.21
LIMCH1-219ENST00000514096 PSIP1O75475 530 aaKnown RBP7.46□□□□□ -1.21
LIMCH1-219ENST00000514096 CRCPO75575 148 aa7.46□□□□□ -1.21
LIMCH1-219ENST00000514096 C2P06681 752 aa7.46□□□□□ -1.21
LIMCH1-219ENST00000514096 AGXTP21549 392 aa7.46□□□□□ -1.21
LIMCH1-219ENST00000514096 CNTFP26441 200 aa7.46□□□□□ -1.21
LIMCH1-219ENST00000514096 GP5P40197 560 aa7.46□□□□□ -1.21
LIMCH1-219ENST00000514096 DIO1P49895 249 aa7.46□□□□□ -1.21
LIMCH1-219ENST00000514096 BMXP51813 675 aa7.46□□□□□ -1.21
LIMCH1-219ENST00000514096 SNRPD2P62316 118 aaKnown RBP7.46□□□□□ -1.21
LIMCH1-219ENST00000514096 ERVK-25P63136 954 aa7.46□□□□□ -1.21
LIMCH1-219ENST00000514096 IRF8Q02556 426 aa7.46□□□□□ -1.21
LIMCH1-219ENST00000514096 SLC13A2Q13183 592 aa7.46□□□□□ -1.21
LIMCH1-219ENST00000514096 MAPRE2Q15555 327 aa7.46□□□□□ -1.21
LIMCH1-219ENST00000514096 TBRG1Q3YBR2 411 aa7.46□□□□□ -1.21
LIMCH1-219ENST00000514096 BCL7AQ4VC05 210 aa7.46□□□□□ -1.21
LIMCH1-219ENST00000514096 WASH2PQ6VEQ5 465 aa7.46□□□□□ -1.21
LIMCH1-219ENST00000514096 SLC26A11Q86WA9 606 aa7.46□□□□□ -1.21
LIMCH1-219ENST00000514096 P3H2Q8IVL5 708 aa7.46□□□□□ -1.21
LIMCH1-219ENST00000514096 ZNF786Q8N393 782 aa7.46□□□□□ -1.21
LIMCH1-219ENST00000514096 CSNK1A1LQ8N752 337 aa7.46□□□□□ -1.21
LIMCH1-219ENST00000514096 ZNF317Q96PQ6 595 aaPredicted RBP7.46□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms