RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 PDPK1O15530 556 aa8.77□□□□□ -1.01
LIMCH1-215ENST00000512632 PSMB5P28074 263 aa8.77□□□□□ -1.01
LIMCH1-215ENST00000512632 KCNJ5P48544 419 aa8.77□□□□□ -1.01
LIMCH1-215ENST00000512632 CCT3P49368 545 aaKnown RBP8.77□□□□□ -1.01
LIMCH1-215ENST00000512632 RPS25P62851 125 aaKnown RBP8.77□□□□□ -1.01
LIMCH1-215ENST00000512632 PCDH1Q08174 1060 aa8.77□□□□□ -1.01
LIMCH1-215ENST00000512632 MAP4K2Q12851 820 aa8.77□□□□□ -1.01
LIMCH1-215ENST00000512632 TEAD2Q15562 447 aa8.77□□□□□ -1.01
LIMCH1-215ENST00000512632 MEDAGQ5VYS4 303 aa8.77□□□□□ -1.01
LIMCH1-215ENST00000512632 C12orf73Q69YU5 71 aa8.77□□□□□ -1.01
LIMCH1-215ENST00000512632 LHFPL3Q86UP9 236 aa8.77□□□□□ -1.01
LIMCH1-215ENST00000512632 SMPDL3AQ92484 453 aa8.77□□□□□ -1.01
LIMCH1-215ENST00000512632 ZNF689Q96CS4 500 aaPredicted RBP8.77□□□□□ -1.01
LIMCH1-215ENST00000512632 NEURL3Q96EH8 262 aa8.77□□□□□ -1.01
LIMCH1-215ENST00000512632 PRAP1Q96NZ9 151 aa8.77□□□□□ -1.01
LIMCH1-215ENST00000512632 FNDC11Q9BVV2 318 aa8.77□□□□□ -1.01
LIMCH1-215ENST00000512632 QRSL1Q9H0R6 528 aaKnown RBP8.77□□□□□ -1.01
LIMCH1-215ENST00000512632 TEX10Q9NXF1 929 aaPredicted RBP8.77□□□□□ -1.01
LIMCH1-215ENST00000512632 PCYT1BQ9Y5K3 369 aaPredicted RBP8.77□□□□□ -1.01
LIMCH1-215ENST00000512632 SCN5AQ14524 2016 aa8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 PRAMEF27A3QJZ7 478 aa8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 WASH3PC4AMC7 463 aa8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 HMGN4O00479 90 aa8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 FAAHO00519 579 aa8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 PI15O43692 258 aa8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 MMP20O60882 483 aa8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 CH25HO95992 272 aa8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 PTNP21246 168 aa8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 SYT14P1Q58G82 188 aa8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 CLEC12AQ5QGZ9 265 aa8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 GDPGP1Q6ZNW5 385 aa8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 FAM83HQ6ZRV2 1179 aaPredicted RBP8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 ADCK2Q7Z695 626 aa8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 ATP6V1C2Q8NEY4 427 aa8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 SETD6Q8TBK2 473 aa8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 CREB3L4Q8TEY5 395 aa8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 OR5P2Q8WZ92 322 aa8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 SLC9A6Q92581 669 aa8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 SPHK2Q9NRA0 654 aa8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 NDUFB11Q9NX14 153 aa8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 CLCA3PQ9Y6N3 262 aa8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 FRS3O43559 492 aa8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 LZTS3O60299 673 aaPredicted RBP8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 PRKRAO75569 313 aaKnown RBP8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 TBX6O95947 436 aaPredicted RBP8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 DDCP20711 480 aa8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 MYL9P24844 172 aa8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 MMP12P39900 470 aa8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 CD79BP40259 229 aa8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 BUD31P41223 144 aaPredicted RBP8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 MAN2A2P49641 1150 aa8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 DBPQ10586 325 aaPredicted RBP8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 HYAL2Q12891 473 aa8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 MLLT11Q13015 90 aaPredicted RBP8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 E2F2Q14209 437 aa8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 ZNF547Q8IVP9 402 aa8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 KREMEN2Q8NCW0 462 aa8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 MTERF3Q96E29 417 aa8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 TEFMQ96QE5 360 aaKnown RBP8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 MACROD1Q9BQ69 325 aa8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 SLC22A4Q9H015 551 aa8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 SERHL2Q9H4I8 314 aa8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 EGLN3Q9H6Z9 239 aa8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 ZDHHC4Q9NPG8 344 aa8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 AHSPQ9NZD4 102 aa8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 PLEKHB1Q9UF11 243 aaPredicted RBP8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 SNX7Q9UNH6 387 aa8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 NR2F6P10588 404 aa8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 MYL12AP19105 171 aa8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 HOXD10P28358 340 aa8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 NTHL1P78549 312 aa8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 CDK10Q15131 360 aa8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 Q5BKY6 102 aa8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 SAXO2Q658L1 398 aa8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 DPPA4Q7L190 304 aa8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 OR6T1Q8NGN1 323 aa8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 OR52P1PQ8NH57 321 aa8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 SLC7A6Q92536 515 aa8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 SLC25A46Q96AG3 418 aa8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 MRGPRX3Q96LB0 322 aa8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 ZNF354BQ96LW1 612 aa8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 ZCCHC3Q9NUD5 404 aaKnown RBP8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 A4GNTQ9UNA3 340 aa8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 HMX3A6NHT5 357 aa8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 B4DXG7 233 aa8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 NDUFB5O43674 189 aa8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 TMPRSS11DO60235 418 aa8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 KIR2DL3P43628 341 aa8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 ZNF438Q7Z4V0 828 aa8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 PDZD3Q86UT5 571 aa8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 FAM20CQ8IXL6 584 aa8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 KLHDC8AQ8IYD2 350 aa8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 LRRC56Q8IYG6 542 aaPredicted RBP8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 KRT78Q8N1N4 520 aa8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 ANKRD53Q8N9V6 530 aa8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 ZNF607Q96SK3 696 aa8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 PLA2G12AQ9BZM1 189 aa8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 ZDHHC5Q9C0B5 715 aa8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 TMA7Q9Y2S6 64 aaKnown RBP8.76□□□□□ -1.01
LIMCH1-215ENST00000512632 THSD7BQ9C0I4 1608 aa8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 106.1 ms