RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 RP9Q8TA86 221 aaKnown RBP7.54□□□□□ -1.2
SCN1A-207ENST00000507401 NT5CQ8TCD5 201 aa7.54□□□□□ -1.2
SCN1A-207ENST00000507401 SLC5A11Q8WWX8 675 aa7.54□□□□□ -1.2
SCN1A-207ENST00000507401 PYDC1Q8WXC3 89 aa7.54□□□□□ -1.2
SCN1A-207ENST00000507401 PYCR2Q96C36 320 aa7.54□□□□□ -1.2
SCN1A-207ENST00000507401 HSPBAP1Q96EW2 488 aa7.54□□□□□ -1.2
SCN1A-207ENST00000507401 TSPAN17Q96FV3 270 aa7.54□□□□□ -1.2
SCN1A-207ENST00000507401 DHRS1Q96LJ7 313 aa7.54□□□□□ -1.2
SCN1A-207ENST00000507401 FAM111AQ96PZ2 611 aa7.54□□□□□ -1.2
SCN1A-207ENST00000507401 OR1F2PQ96R84 312 aa7.54□□□□□ -1.2
SCN1A-207ENST00000507401 NEURL2Q9BR09 285 aa7.54□□□□□ -1.2
SCN1A-207ENST00000507401 VN1R1Q9GZP7 353 aa7.54□□□□□ -1.2
SCN1A-207ENST00000507401 RNF32Q9H0A6 362 aa7.54□□□□□ -1.2
SCN1A-207ENST00000507401 PELI2Q9HAT8 420 aa7.54□□□□□ -1.2
SCN1A-207ENST00000507401 HMG20AQ9NP66 347 aa7.54□□□□□ -1.2
SCN1A-207ENST00000507401 DIABLOQ9NR28 239 aa7.54□□□□□ -1.2
SCN1A-207ENST00000507401 LUZP4Q9P127 313 aa7.54□□□□□ -1.2
SCN1A-207ENST00000507401 SLC17A6Q9P2U8 582 aa7.54□□□□□ -1.2
SCN1A-207ENST00000507401 TEKT2Q9UIF3 430 aa7.54□□□□□ -1.2
SCN1A-207ENST00000507401 RIMS3Q9UJD0 308 aa7.54□□□□□ -1.2
SCN1A-207ENST00000507401 SH2B3Q9UQQ2 575 aa7.54□□□□□ -1.2
SCN1A-207ENST00000507401 SLC22A14Q9Y267 594 aa7.54□□□□□ -1.2
SCN1A-207ENST00000507401 ERGIC3Q9Y282 383 aa7.54□□□□□ -1.2
SCN1A-207ENST00000507401 MRPS2Q9Y399 296 aaKnown RBP7.54□□□□□ -1.2
SCN1A-207ENST00000507401 NAALAD2Q9Y3Q0 740 aa7.54□□□□□ -1.2
SCN1A-207ENST00000507401 OARD1Q9Y530 152 aa7.54□□□□□ -1.2
SCN1A-207ENST00000507401 PSAT1Q9Y617 370 aa7.54□□□□□ -1.2
SCN1A-207ENST00000507401 UTP20O75691 2785 aaKnown RBP7.54□□□□□ -1.2
SCN1A-207ENST00000507401 TRAV17A0A0B4J275 112 aa7.53□□□□□ -1.2
SCN1A-207ENST00000507401 PRSS51A0A1B0GVH4 220 aa7.53□□□□□ -1.2
SCN1A-207ENST00000507401 A0A1W2PPM1 405 aa7.53□□□□□ -1.2
SCN1A-207ENST00000507401 MAGEB17A8MXT2 336 aa7.53□□□□□ -1.2
SCN1A-207ENST00000507401 SGK494L7N484 410 aa7.53□□□□□ -1.2
SCN1A-207ENST00000507401 M0QX08 132 aa7.53□□□□□ -1.2
SCN1A-207ENST00000507401 CDC7O00311 574 aa7.53□□□□□ -1.2
SCN1A-207ENST00000507401 FFAR3O14843 346 aa7.53□□□□□ -1.2
SCN1A-207ENST00000507401 RGS13O14921 159 aa7.53□□□□□ -1.2
SCN1A-207ENST00000507401 GPR42O15529 346 aa7.53□□□□□ -1.2
SCN1A-207ENST00000507401 GALR3O60755 368 aaPredicted RBP7.53□□□□□ -1.2
SCN1A-207ENST00000507401 GLRA3O75311 464 aa7.53□□□□□ -1.2
SCN1A-207ENST00000507401 BCAS2O75934 225 aaPredicted RBP7.53□□□□□ -1.2
SCN1A-207ENST00000507401 AGFG2O95081 481 aa7.53□□□□□ -1.2
SCN1A-207ENST00000507401 WISP3O95389 354 aaPredicted RBP7.53□□□□□ -1.2
SCN1A-207ENST00000507401 GSTT2P0CG29 244 aa7.53□□□□□ -1.2
SCN1A-207ENST00000507401 GSTT2BP0CG30 244 aa7.53□□□□□ -1.2
SCN1A-207ENST00000507401 SMIM10L1P0DMW3 83 aa7.53□□□□□ -1.2
SCN1A-207ENST00000507401 EDN3P14138 238 aa7.53□□□□□ -1.2
SCN1A-207ENST00000507401 ALOX12P18054 663 aa7.53□□□□□ -1.2
SCN1A-207ENST00000507401 SAT1P21673 171 aa7.53□□□□□ -1.2
SCN1A-207ENST00000507401 GSTM2P28161 218 aa7.53□□□□□ -1.2
SCN1A-207ENST00000507401 SSTR1P30872 391 aa7.53□□□□□ -1.2
SCN1A-207ENST00000507401 GGT5P36269 586 aa7.53□□□□□ -1.2
SCN1A-207ENST00000507401 XCR1P46094 333 aa7.53□□□□□ -1.2
SCN1A-207ENST00000507401 SLC6A12P48065 614 aa7.53□□□□□ -1.2
SCN1A-207ENST00000507401 TRPC1P48995 793 aa7.53□□□□□ -1.2
SCN1A-207ENST00000507401 TNFSF10P50591 281 aa7.53□□□□□ -1.2
SCN1A-207ENST00000507401 PGGT1BP53609 377 aa7.53□□□□□ -1.2
SCN1A-207ENST00000507401 SLC12A2P55011 1212 aa7.53□□□□□ -1.2
SCN1A-207ENST00000507401 MAT1AQ00266 395 aaKnown RBP7.53□□□□□ -1.2
SCN1A-207ENST00000507401 RGS1Q08116 209 aa7.53□□□□□ -1.2
SCN1A-207ENST00000507401 ELOAQ14241 798 aaKnown RBP7.53□□□□□ -1.2
SCN1A-207ENST00000507401 FLOT2Q14254 428 aa7.53□□□□□ -1.2
SCN1A-207ENST00000507401 ZNF846Q147U1 533 aa7.53□□□□□ -1.2
SCN1A-207ENST00000507401 FASTKD3Q14CZ7 662 aaKnown RBP7.53□□□□□ -1.2
SCN1A-207ENST00000507401 MAPRE2Q15555 327 aa7.53□□□□□ -1.2
SCN1A-207ENST00000507401 SYT16Q17RD7 645 aa7.53□□□□□ -1.2
SCN1A-207ENST00000507401 EIF2S3LQ2VIR3 472 aaKnown RBP7.53□□□□□ -1.2
SCN1A-207ENST00000507401 MINDY4Q4G0A6 757 aa7.53□□□□□ -1.2
SCN1A-207ENST00000507401 CATSPEREQ5SY80 951 aa7.53□□□□□ -1.2
SCN1A-207ENST00000507401 ATAD3BQ5T9A4 648 aa7.53□□□□□ -1.2
SCN1A-207ENST00000507401 PLAG1Q6DJT9 500 aa7.53□□□□□ -1.2
SCN1A-207ENST00000507401 NXPE4Q6UWF7 544 aa7.53□□□□□ -1.2
SCN1A-207ENST00000507401 BNC2Q6ZN30 1099 aaPredicted RBP7.53□□□□□ -1.2
SCN1A-207ENST00000507401 CD163Q86VB7 1156 aa7.53□□□□□ -1.2
SCN1A-207ENST00000507401 THOC6Q86W42 341 aaKnown RBP7.53□□□□□ -1.2
SCN1A-207ENST00000507401 CEP97Q8IW35 865 aa7.53□□□□□ -1.2
SCN1A-207ENST00000507401 IQCF2Q8IXL9 164 aa7.53□□□□□ -1.2
SCN1A-207ENST00000507401 PGAM4Q8N0Y7 254 aa7.53□□□□□ -1.2
SCN1A-207ENST00000507401 CENPSQ8N2Z9 138 aa7.53□□□□□ -1.2
SCN1A-207ENST00000507401 TCAIMQ8N3R3 496 aa7.53□□□□□ -1.2
SCN1A-207ENST00000507401 ST6GALNAC3Q8NDV1 305 aa7.53□□□□□ -1.2
SCN1A-207ENST00000507401 M1APQ8TC57 530 aa7.53□□□□□ -1.2
SCN1A-207ENST00000507401 BRIX1Q8TDN6 353 aaKnown RBP7.53□□□□□ -1.2
SCN1A-207ENST00000507401 SSC4DQ8WTU2 575 aa7.53□□□□□ -1.2
SCN1A-207ENST00000507401 ANKRD49Q8WVL7 239 aa7.53□□□□□ -1.2
SCN1A-207ENST00000507401 FAR1Q8WVX9 515 aa7.53□□□□□ -1.2
SCN1A-207ENST00000507401 NEIL2Q969S2 332 aa7.53□□□□□ -1.2
SCN1A-207ENST00000507401 ISOC1Q96CN7 298 aa7.53□□□□□ -1.2
SCN1A-207ENST00000507401 SMIM10Q96HG1 83 aa7.53□□□□□ -1.2
SCN1A-207ENST00000507401 UBXN10Q96LJ8 280 aa7.53□□□□□ -1.2
SCN1A-207ENST00000507401 CPNE1Q99829 537 aa7.53□□□□□ -1.2
SCN1A-207ENST00000507401 SH3GL1Q99961 368 aa7.53□□□□□ -1.2
SCN1A-207ENST00000507401 MACROD1Q9BQ69 325 aa7.53□□□□□ -1.2
SCN1A-207ENST00000507401 AIF1LQ9BQI0 150 aa7.53□□□□□ -1.2
SCN1A-207ENST00000507401 MESP1Q9BRJ9 268 aa7.53□□□□□ -1.2
SCN1A-207ENST00000507401 GSX2Q9BZM3 304 aa7.53□□□□□ -1.2
SCN1A-207ENST00000507401 PITHD1Q9GZP4 211 aaPredicted RBP7.53□□□□□ -1.2
SCN1A-207ENST00000507401 DERL2Q9GZP9 239 aa7.53□□□□□ -1.2
SCN1A-207ENST00000507401 NT5DC2Q9H857 520 aa7.53□□□□□ -1.2
SCN1A-207ENST00000507401 SMYD2Q9NRG4 433 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms