RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 RCAN2Q14206 197 aa12.75□□□□□ -0.37
VARS-227ENST00000489979 RPS6KA2Q15349 733 aa12.75□□□□□ -0.37
VARS-227ENST00000489979 SPRED3Q2MJR0 410 aa12.75□□□□□ -0.37
VARS-227ENST00000489979 WIPI1Q5MNZ9 446 aaPredicted RBP12.75□□□□□ -0.37
VARS-227ENST00000489979 STEAP4Q687X5 459 aa12.75□□□□□ -0.37
VARS-227ENST00000489979 C18orf63Q68DL7 685 aa12.75□□□□□ -0.37
VARS-227ENST00000489979 PACS2Q86VP3 889 aa12.75□□□□□ -0.37
VARS-227ENST00000489979 ST13P4Q8IZP2 240 aaPredicted RBP12.75□□□□□ -0.37
VARS-227ENST00000489979 SPATA6LQ8N4H0 392 aa12.75□□□□□ -0.37
VARS-227ENST00000489979 SIMC1Q8NDZ2 872 aa12.75□□□□□ -0.37
VARS-227ENST00000489979 SPPL2AQ8TCT8 520 aa12.75□□□□□ -0.37
VARS-227ENST00000489979 VPS39Q96JC1 886 aa12.75□□□□□ -0.37
VARS-227ENST00000489979 PBKQ96KB5 322 aa12.75□□□□□ -0.37
VARS-227ENST00000489979 NAP1L3Q99457 506 aaPredicted RBP12.75□□□□□ -0.37
VARS-227ENST00000489979 PIP5K1AQ99755 562 aa12.75□□□□□ -0.37
VARS-227ENST00000489979 ANGPTL4Q9BY76 406 aa12.75□□□□□ -0.37
VARS-227ENST00000489979 DERL2Q9GZP9 239 aa12.75□□□□□ -0.37
VARS-227ENST00000489979 EIF3LQ9Y262 564 aaKnown RBP12.75□□□□□ -0.37
VARS-227ENST00000489979 EXPH5Q8NEV8 1989 aa12.74□□□□□ -0.37
VARS-227ENST00000489979 OR6C76A6NM76 312 aa12.74□□□□□ -0.37
VARS-227ENST00000489979 WASHC1A8K0Z3 465 aa12.74□□□□□ -0.37
VARS-227ENST00000489979 CAPN14A8MX76 684 aa12.74□□□□□ -0.37
VARS-227ENST00000489979 PGRMC1O00264 195 aaKnown RBP12.74□□□□□ -0.37
VARS-227ENST00000489979 TLX1P31314 330 aaPredicted RBP12.74□□□□□ -0.37
VARS-227ENST00000489979 CASP2P42575 452 aa12.74□□□□□ -0.37
VARS-227ENST00000489979 NAGLUP54802 743 aa12.74□□□□□ -0.37
VARS-227ENST00000489979 HNRNPH2P55795 449 aaKnown RBP12.74□□□□□ -0.37
VARS-227ENST00000489979 PPP2R2BQ00005 443 aa12.74□□□□□ -0.37
VARS-227ENST00000489979 TBCCQ15814 346 aa12.74□□□□□ -0.37
VARS-227ENST00000489979 OR4C11Q6IEV9 310 aa12.74□□□□□ -0.37
VARS-227ENST00000489979 SULT1C3Q6IMI6 304 aa12.74□□□□□ -0.37
VARS-227ENST00000489979 CAPN12Q6ZSI9 719 aa12.74□□□□□ -0.37
VARS-227ENST00000489979 YTHDF3Q7Z739 585 aaKnown RBP12.74□□□□□ -0.37
VARS-227ENST00000489979 GPR180Q86V85 440 aa12.74□□□□□ -0.37
VARS-227ENST00000489979 GPSM1Q86YR5 675 aa12.74□□□□□ -0.37
VARS-227ENST00000489979 PDIK1LQ8N165 341 aa12.74□□□□□ -0.37
VARS-227ENST00000489979 ZNF441Q8N8Z8 693 aa12.74□□□□□ -0.37
VARS-227ENST00000489979 ZPLD1Q8TCW7 415 aa12.74□□□□□ -0.37
VARS-227ENST00000489979 SLC44A1Q8WWI5 657 aa12.74□□□□□ -0.37
VARS-227ENST00000489979 RIT1Q92963 219 aa12.74□□□□□ -0.37
VARS-227ENST00000489979 PIGTQ969N2 578 aa12.74□□□□□ -0.37
VARS-227ENST00000489979 BDH2Q9BUT1 245 aa12.74□□□□□ -0.37
VARS-227ENST00000489979 SFXN3Q9BWM7 321 aa12.74□□□□□ -0.37
VARS-227ENST00000489979 OR51B5Q9H339 312 aa12.74□□□□□ -0.37
VARS-227ENST00000489979 TEX10Q9NXF1 929 aaPredicted RBP12.74□□□□□ -0.37
VARS-227ENST00000489979 MS4A12Q9NXJ0 267 aa12.74□□□□□ -0.37
VARS-227ENST00000489979 TEX264Q9Y6I9 313 aa12.74□□□□□ -0.37
VARS-227ENST00000489979 FBN1P35555 2871 aaKnown RBP12.74□□□□□ -0.37
VARS-227ENST00000489979 ATRQ13535 2644 aa12.74□□□□□ -0.37
VARS-227ENST00000489979 DSCAMO60469 2012 aa12.73□□□□□ -0.37
VARS-227ENST00000489979 C2orf92A0A1B0GVN3 265 aa12.73□□□□□ -0.37
VARS-227ENST00000489979 TRIM64A6NGJ6 449 aa12.73□□□□□ -0.37
VARS-227ENST00000489979 TRIM64BA6NI03 449 aa12.73□□□□□ -0.37
VARS-227ENST00000489979 GOLGA6L6A8MZA4 724 aa12.73□□□□□ -0.37
VARS-227ENST00000489979 GNB5O14775 395 aa12.73□□□□□ -0.37
VARS-227ENST00000489979 CCNT2O60583 730 aaKnown RBP12.73□□□□□ -0.37
VARS-227ENST00000489979 WISP3O95389 354 aaPredicted RBP12.73□□□□□ -0.37
VARS-227ENST00000489979 GPR75O95800 540 aa12.73□□□□□ -0.37
VARS-227ENST00000489979 CYP4B1P13584 511 aa12.73□□□□□ -0.37
VARS-227ENST00000489979 CASP3P42574 277 aa12.73□□□□□ -0.37
VARS-227ENST00000489979 MGAT5Q09328 741 aa12.73□□□□□ -0.37
VARS-227ENST00000489979 FRG1Q14331 258 aaKnown RBP12.73□□□□□ -0.37
VARS-227ENST00000489979 OR4D1Q15615 310 aa12.73□□□□□ -0.37
VARS-227ENST00000489979 CDKL4Q5MAI5 379 aa12.73□□□□□ -0.37
VARS-227ENST00000489979 DEPDC1Q5TB30 811 aa12.73□□□□□ -0.37
VARS-227ENST00000489979 KHDRBS2Q5VWX1 349 aaKnown RBP12.73□□□□□ -0.37
VARS-227ENST00000489979 MED27Q6P2C8 311 aa12.73□□□□□ -0.37
VARS-227ENST00000489979 PRSS57Q6UWY2 283 aa12.73□□□□□ -0.37
VARS-227ENST00000489979 YRDCQ86U90 279 aaKnown RBP12.73□□□□□ -0.37
VARS-227ENST00000489979 LAS2Q8IYD9 372 aa12.73□□□□□ -0.37
VARS-227ENST00000489979 RNF175Q8N4F7 328 aa12.73□□□□□ -0.37
VARS-227ENST00000489979 FAM83FQ8NEG4 500 aaPredicted RBP12.73□□□□□ -0.37
VARS-227ENST00000489979 UBE2E3Q969T4 207 aa12.73□□□□□ -0.37
VARS-227ENST00000489979 CMTM7Q96FZ5 175 aa12.73□□□□□ -0.37
VARS-227ENST00000489979 TMEM41AQ96HV5 264 aa12.73□□□□□ -0.37
VARS-227ENST00000489979 SECISBP2Q96T21 854 aaKnown RBP12.73□□□□□ -0.37
VARS-227ENST00000489979 TUBA1CQ9BQE3 449 aa12.73□□□□□ -0.37
VARS-227ENST00000489979 PELOQ9BRX2 385 aaKnown RBP12.73□□□□□ -0.37
VARS-227ENST00000489979 POPDC3Q9HBV1 291 aa12.73□□□□□ -0.37
VARS-227ENST00000489979 SNX15Q9NRS6 342 aa12.73□□□□□ -0.37
VARS-227ENST00000489979 CD274Q9NZQ7 290 aa12.73□□□□□ -0.37
VARS-227ENST00000489979 C6orf203Q9P0P8 240 aaPredicted RBP12.73□□□□□ -0.37
VARS-227ENST00000489979 NDRG3Q9UGV2 375 aa12.73□□□□□ -0.37
VARS-227ENST00000489979 PHF11Q9UIL8 331 aa12.73□□□□□ -0.37
VARS-227ENST00000489979 PTBP2Q9UKA9 531 aaKnown RBP12.73□□□□□ -0.37
VARS-227ENST00000489979 NPFFR2Q9Y5X5 522 aa12.73□□□□□ -0.37
VARS-227ENST00000489979 RCBTB2O95199 551 aa12.72□□□□□ -0.37
VARS-227ENST00000489979 PTPN6P29350 595 aa12.72□□□□□ -0.37
VARS-227ENST00000489979 SSTR4P31391 388 aa12.72□□□□□ -0.37
VARS-227ENST00000489979 BUD31P41223 144 aaPredicted RBP12.72□□□□□ -0.37
VARS-227ENST00000489979 RAP1GDS1P52306 607 aa12.72□□□□□ -0.37
VARS-227ENST00000489979 E2F2Q14209 437 aa12.72□□□□□ -0.37
VARS-227ENST00000489979 HLA-DQA1Q5Y7H0 255 aa12.72□□□□□ -0.37
VARS-227ENST00000489979 TIGD3Q6B0B8 471 aa12.72□□□□□ -0.37
VARS-227ENST00000489979 PLXDC2Q6UX71 529 aa12.72□□□□□ -0.37
VARS-227ENST00000489979 ANKMY2Q8IV38 441 aa12.72□□□□□ -0.37
VARS-227ENST00000489979 PDPRQ8NCN5 879 aa12.72□□□□□ -0.37
VARS-227ENST00000489979 OR7G3Q8NG95 312 aa12.72□□□□□ -0.37
VARS-227ENST00000489979 NANOS1Q8WY41 292 aaKnown RBP12.72□□□□□ -0.37
VARS-227ENST00000489979 TP53INP1Q96A56 240 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms