RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 ZNF682O95780 498 aa11.48□□□□□ -0.57
HDAC6-230ENST00000488543 BCL10O95999 233 aa11.48□□□□□ -0.57
HDAC6-230ENST00000488543 ETFAP13804 333 aa11.48□□□□□ -0.57
HDAC6-230ENST00000488543 DRD2P14416 443 aa11.48□□□□□ -0.57
HDAC6-230ENST00000488543 CERS1P27544 350 aa11.48□□□□□ -0.57
HDAC6-230ENST00000488543 KDELR2P33947 212 aa11.48□□□□□ -0.57
HDAC6-230ENST00000488543 PCGF2P35227 344 aa11.48□□□□□ -0.57
HDAC6-230ENST00000488543 TGFBR1P36897 503 aa11.48□□□□□ -0.57
HDAC6-230ENST00000488543 DCTP40126 519 aa11.48□□□□□ -0.57
HDAC6-230ENST00000488543 FASLGP48023 281 aa11.48□□□□□ -0.57
HDAC6-230ENST00000488543 GSSP48637 474 aa11.48□□□□□ -0.57
HDAC6-230ENST00000488543 CRYBA2P53672 197 aa11.48□□□□□ -0.57
HDAC6-230ENST00000488543 CASP9P55211 416 aa11.48□□□□□ -0.57
HDAC6-230ENST00000488543 RAB8AP61006 207 aa11.48□□□□□ -0.57
HDAC6-230ENST00000488543 VEZF1Q14119 521 aa11.48□□□□□ -0.57
HDAC6-230ENST00000488543 SMN1Q16637 294 aaKnown RBP11.48□□□□□ -0.57
HDAC6-230ENST00000488543 NDUFAF5Q5TEU4 345 aa11.48□□□□□ -0.57
HDAC6-230ENST00000488543 TRIM40Q6P9F5 258 aa11.48□□□□□ -0.57
HDAC6-230ENST00000488543 OGFOD3Q6PK18 319 aa11.48□□□□□ -0.57
HDAC6-230ENST00000488543 SLC16A12Q6ZSM3 486 aa11.48□□□□□ -0.57
HDAC6-230ENST00000488543 C17orf82Q86X59 251 aaPredicted RBP11.48□□□□□ -0.57
HDAC6-230ENST00000488543 SLC35F3Q8IY50 421 aa11.48□□□□□ -0.57
HDAC6-230ENST00000488543 CACTIN-AS1Q8N1I8 211 aa11.48□□□□□ -0.57
HDAC6-230ENST00000488543 CENPSQ8N2Z9 138 aa11.48□□□□□ -0.57
HDAC6-230ENST00000488543 NATD1Q8N6N6 113 aa11.48□□□□□ -0.57
HDAC6-230ENST00000488543 EXOSC8Q96B26 276 aaKnown RBP11.48□□□□□ -0.57
HDAC6-230ENST00000488543 SIRT3Q9NTG7 399 aaPredicted RBP11.48□□□□□ -0.57
HDAC6-230ENST00000488543 DNAJB9Q9UBS3 223 aa11.48□□□□□ -0.57
HDAC6-230ENST00000488543 ABCG2Q9UNQ0 655 aa11.48□□□□□ -0.57
HDAC6-230ENST00000488543 ATG4BQ9Y4P1 393 aa11.48□□□□□ -0.57
HDAC6-230ENST00000488543 TNRC6BQ9UPQ9 1833 aaKnown RBP11.48□□□□□ -0.57
HDAC6-230ENST00000488543 hCG_2039718K7EN88 272 aa11.47□□□□□ -0.57
HDAC6-230ENST00000488543 B4GALT2O60909 372 aa11.47□□□□□ -0.57
HDAC6-230ENST00000488543 SEMG1P04279 462 aa11.47□□□□□ -0.57
HDAC6-230ENST00000488543 SMIM10L1P0DMW3 83 aa11.47□□□□□ -0.57
HDAC6-230ENST00000488543 UQCRC2P22695 453 aa11.47□□□□□ -0.57
HDAC6-230ENST00000488543 EPHA2P29317 976 aa11.47□□□□□ -0.57
HDAC6-230ENST00000488543 OPRL1P41146 370 aa11.47□□□□□ -0.57
HDAC6-230ENST00000488543 PPM1FP49593 454 aaPredicted RBP11.47□□□□□ -0.57
HDAC6-230ENST00000488543 GP2P55259 537 aaKnown RBP11.47□□□□□ -0.57
HDAC6-230ENST00000488543 RP1P56715 2156 aa11.47□□□□□ -0.57
HDAC6-230ENST00000488543 STXBP1P61764 594 aaKnown RBP11.47□□□□□ -0.57
HDAC6-230ENST00000488543 EEF1A2Q05639 463 aaKnown RBP11.47□□□□□ -0.57
HDAC6-230ENST00000488543 ITGADQ13349 1161 aa11.47□□□□□ -0.57
HDAC6-230ENST00000488543 RAPSNQ13702 412 aa11.47□□□□□ -0.57
HDAC6-230ENST00000488543 TRIM61Q5EBN2 209 aa11.47□□□□□ -0.57
HDAC6-230ENST00000488543 C11orf74Q86VG3 221 aa11.47□□□□□ -0.57
HDAC6-230ENST00000488543 EID3Q8N140 333 aa11.47□□□□□ -0.57
HDAC6-230ENST00000488543 BORCS5Q969J3 196 aa11.47□□□□□ -0.57
HDAC6-230ENST00000488543 MAL2Q969L2 176 aa11.47□□□□□ -0.57
HDAC6-230ENST00000488543 UBE2FQ969M7 185 aa11.47□□□□□ -0.57
HDAC6-230ENST00000488543 GAL3ST3Q96A11 431 aa11.47□□□□□ -0.57
HDAC6-230ENST00000488543 SMIM10Q96HG1 83 aa11.47□□□□□ -0.57
HDAC6-230ENST00000488543 PYURFQ96I23 114 aa11.47□□□□□ -0.57
HDAC6-230ENST00000488543 SLC38A3Q99624 504 aa11.47□□□□□ -0.57
HDAC6-230ENST00000488543 ALOXE3Q9BYJ1 711 aa11.47□□□□□ -0.57
HDAC6-230ENST00000488543 RIBC2Q9H4K1 309 aa11.47□□□□□ -0.57
HDAC6-230ENST00000488543 GAREM1Q9H706 876 aa11.47□□□□□ -0.57
HDAC6-230ENST00000488543 C1GALT1Q9NS00 363 aa11.47□□□□□ -0.57
HDAC6-230ENST00000488543 SCN3AQ9NY46 2000 aa11.47□□□□□ -0.57
HDAC6-230ENST00000488543 EHD3Q9NZN3 535 aa11.47□□□□□ -0.57
HDAC6-230ENST00000488543 LRIT1Q9P2V4 623 aa11.47□□□□□ -0.57
HDAC6-230ENST00000488543 SUSD2Q9UGT4 822 aa11.47□□□□□ -0.57
HDAC6-230ENST00000488543 RAPGEFL1Q9UHV5 662 aa11.47□□□□□ -0.57
HDAC6-230ENST00000488543 TMEFF2Q9UIK5 374 aaPredicted RBP11.47□□□□□ -0.57
HDAC6-230ENST00000488543 RNF215Q9Y6U7 377 aa11.47□□□□□ -0.57
HDAC6-230ENST00000488543 A0A0J9YY10 115 aa11.47□□□□□ -0.57
HDAC6-230ENST00000488543 OR5K3A6NET4 321 aa11.47□□□□□ -0.57
HDAC6-230ENST00000488543 MYO1GB0I1T2 1018 aa11.47□□□□□ -0.57
HDAC6-230ENST00000488543 SLC1A7O00341 560 aa11.47□□□□□ -0.57
HDAC6-230ENST00000488543 HCRTR1O43613 425 aa11.47□□□□□ -0.57
HDAC6-230ENST00000488543 UBXN7O94888 489 aa11.47□□□□□ -0.57
HDAC6-230ENST00000488543 IDUAP35475 653 aa11.47□□□□□ -0.57
HDAC6-230ENST00000488543 SOAT1P35610 550 aa11.47□□□□□ -0.57
HDAC6-230ENST00000488543 TSFMP43897 325 aaKnown RBP11.47□□□□□ -0.57
HDAC6-230ENST00000488543 RXRGP48443 463 aa11.47□□□□□ -0.57
HDAC6-230ENST00000488543 IL5RAQ01344 420 aa11.47□□□□□ -0.57
HDAC6-230ENST00000488543 SLC9A5Q14940 896 aa11.47□□□□□ -0.57
HDAC6-230ENST00000488543 ZNF829Q3KNS6 432 aaPredicted RBP11.47□□□□□ -0.57
HDAC6-230ENST00000488543 C14orf28Q4W4Y0 310 aa11.47□□□□□ -0.57
HDAC6-230ENST00000488543 GTF2IRD2BQ6EKJ0 949 aa11.47□□□□□ -0.57
HDAC6-230ENST00000488543 TCEAL6Q6IPX3 200 aa11.47□□□□□ -0.57
HDAC6-230ENST00000488543 CCDC81Q6ZN84 652 aa11.47□□□□□ -0.57
HDAC6-230ENST00000488543 GTF2IRD2Q86UP8 949 aa11.47□□□□□ -0.57
HDAC6-230ENST00000488543 RNF130Q86XS8 419 aa11.47□□□□□ -0.57
HDAC6-230ENST00000488543 RBM12BQ8IXT5 1001 aaKnown RBP11.47□□□□□ -0.57
HDAC6-230ENST00000488543 SRFBP1Q8NEF9 429 aaKnown RBP11.47□□□□□ -0.57
HDAC6-230ENST00000488543 ZNF555Q8NEP9 628 aa11.47□□□□□ -0.57
HDAC6-230ENST00000488543 BAHD1Q8TBE0 780 aaPredicted RBP11.47□□□□□ -0.57
HDAC6-230ENST00000488543 UTP15Q8TED0 518 aaKnown RBP11.47□□□□□ -0.57
HDAC6-230ENST00000488543 TCEAL3Q969E4 200 aa11.47□□□□□ -0.57
HDAC6-230ENST00000488543 ERVK-18Q9QC07 812 aa11.47□□□□□ -0.57
HDAC6-230ENST00000488543 UNC13CQ8NB66 2214 aa11.47□□□□□ -0.57
HDAC6-230ENST00000488543 LOC105369274A0A096LPK9 316 aa11.46□□□□□ -0.57
HDAC6-230ENST00000488543 LOC102723532A0A0G2JNH3 316 aa11.46□□□□□ -0.57
HDAC6-230ENST00000488543 A0A1B0GTQ1 180 aa11.46□□□□□ -0.57
HDAC6-230ENST00000488543 LOC100130705A0A1B0GUX0 176 aa11.46□□□□□ -0.57
HDAC6-230ENST00000488543 TMEM229AB2RXF0 380 aa11.46□□□□□ -0.57
HDAC6-230ENST00000488543 PGRMC2O15173 223 aa11.46□□□□□ -0.57
HDAC6-230ENST00000488543 BCAS1O75363 584 aaPredicted RBP11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms