RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 TP53INP1Q96A56 240 aa11.26□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 SARAFQ96BY9 339 aa11.26□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 REPS1Q96D71 796 aa11.26□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 CENPKQ9BS16 269 aa11.26□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 UBQLN3Q9H347 655 aa11.26□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 IPPKQ9H8X2 491 aa11.26□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 ACTR8Q9H981 624 aa11.26□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 ZBTB26Q9HCK0 441 aa11.26□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 SDAD1Q9NVU7 687 aaKnown RBP eCLIP11.26□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 ACAD8Q9UKU7 415 aa11.26□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 CES1P1Q9UKY3 287 aa11.26□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 TNPO3Q9Y5L0 923 aaKnown RBP11.26□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 KIAA1549Q9HCM3 1950 aa11.26□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 ACANP16112 2415 aa11.26□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 A0A096LPK6 155 aa11.25□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 IQANK1A0A1B0GTG1 560 aa11.25□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 GLOD5A6NK44 160 aa11.25□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 DYRK3O43781 588 aa11.25□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 SEMA3DO95025 777 aa11.25□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 AIFM1O95831 613 aa11.25□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 GABRA1P14867 456 aa11.25□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 SERPINB3P29508 390 aa11.25□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 SLC25A35Q3KQZ1 300 aa11.25□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 C1orf185Q5T7R7 199 aa11.25□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 WLSQ5T9L3 541 aa11.25□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 RIPPLY2Q5TAB7 128 aa11.25□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 RNF111Q6ZNA4 994 aa11.25□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 TMEM151AQ8N4L1 468 aa11.25□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 OR52B6Q8NGF0 335 aa11.25□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 TRIM44Q96DX7 344 aaPredicted RBP11.25□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 ACSS3Q9H6R3 686 aa11.25□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 SLC24A3Q9HC58 644 aa11.25□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 ZNF358Q9NW07 568 aa11.25□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 ADAM29Q9UKF5 820 aa11.25□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 L3MBTL1Q9Y468 752 aa11.25□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 SYT5O00445 386 aa11.24□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 CLDN9O95484 217 aa11.24□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 CT62P0C5K7 136 aa11.24□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 NR2F6P10588 404 aa11.24□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 GFAPP14136 432 aa11.24□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 TYK2P29597 1187 aa11.24□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 SSTR4P31391 388 aa11.24□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 CEACAM8P31997 349 aaPredicted RBP11.24□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 PIK3CGP48736 1102 aa11.24□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 SLC7A5Q01650 507 aa11.24□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 MGAT2Q10469 447 aa11.24□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 TRAF3Q13114 568 aa11.24□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 C10orf62Q5T681 223 aaPredicted RBP11.24□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 PRAMEF20Q5VT98 475 aa11.24□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 CES4AQ5XG92 561 aa11.24□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 SLC29A4Q7RTT9 530 aa11.24□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 ULK2Q8IYT8 1036 aa11.24□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 CLYBLQ8N0X4 340 aa11.24□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 C17orf47Q8NEP4 570 aa11.24□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 OR10Q1Q8NGQ4 319 aa11.24□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 SECISBP2Q96T21 854 aaKnown RBP11.24□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 SERPINI1Q99574 410 aa11.24□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 ANGPTL4Q9BY76 406 aa11.24□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 LDAHQ9H6V9 325 aa11.24□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 NOL11Q9H8H0 719 aaKnown RBP11.24□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 TEX10Q9NXF1 929 aaPredicted RBP11.24□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 PCTPQ9UKL6 214 aa11.24□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 BOKQ9UMX3 212 aaPredicted RBP11.24□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 ANGPTL3Q9Y5C1 460 aa11.24□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 NIPBLQ6KC79 2804 aaeCLIP11.24□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 MED12LQ86YW9 2145 aa11.23□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 A0A1B0GTL3 188 aa11.23□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 C2orf92A0A1B0GVN3 265 aa11.23□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 ESYT3A0FGR9 886 aa11.23□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 AHRRA9YTQ3 701 aa11.23□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 KDM4EB2RXH2 506 aaPredicted RBP11.23□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 STX16-NPEPL1H3BU86 382 aa11.23□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 STX16O14662 325 aa11.23□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 OR10H2O60403 315 aa11.23□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 CTAG2O75638 210 aa11.23□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 EPPINO95925 133 aa11.23□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 GBAP04062 536 aa11.23□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 HPNP05981 417 aa11.23□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 SBK3P0C264 359 aa11.23□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 KCNJ2P63252 427 aa11.23□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 PHEXP78562 749 aa11.23□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 CRYZQ08257 329 aaKnown RBP11.23□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 FBXL19-AS1Q494R0 122 aa11.23□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 GGTA1PQ4G0N0 100 aa11.23□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 NHSL2Q5HYW2 709 aa11.23□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 TBCELQ5QJ74 424 aa11.23□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 FRG2Q64ET8 278 aa11.23□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 VASNQ6EMK4 673 aa11.23□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 OR52E8Q6IFG1 317 aa11.23□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 TMEM81Q6P7N7 255 aa11.23□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 CYP20A1Q6UW02 462 aa11.23□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 SYT10Q6XYQ8 523 aa11.23□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 TMEM64Q6YI46 380 aa11.23□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 NUDT13Q86X67 352 aa11.23□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 MYLK4Q86YV6 388 aaPredicted RBP11.23□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 TAGAPQ8N103 731 aa11.23□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 METTL4Q8N3J2 472 aa11.23□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 C17orf53Q8N3J3 647 aaPredicted RBP11.23□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 FAM13CQ8NE31 585 aa11.23□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 SPPL2AQ8TCT8 520 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms