RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 TCEAL2Q9H3H9 227 aaPredicted RBP12.76□□□□□ -0.37
COL6A3-209ENST00000472056 RLIMQ9NVW2 624 aa12.76□□□□□ -0.37
COL6A3-209ENST00000472056 RNF215Q9Y6U7 377 aa12.76□□□□□ -0.37
COL6A3-209ENST00000472056 IL1AP01583 271 aa12.76□□□□□ -0.37
COL6A3-209ENST00000472056 DRD2P14416 443 aa12.76□□□□□ -0.37
COL6A3-209ENST00000472056 PRSS3P35030 304 aa12.76□□□□□ -0.37
COL6A3-209ENST00000472056 SLC51AQ86UW1 340 aa12.76□□□□□ -0.37
COL6A3-209ENST00000472056 PSMG2Q969U7 264 aa12.76□□□□□ -0.37
COL6A3-209ENST00000472056 C1orf74Q96LT6 269 aa12.76□□□□□ -0.37
COL6A3-209ENST00000472056 GAL3ST4Q96RP7 486 aa12.76□□□□□ -0.37
COL6A3-209ENST00000472056 B3GNT5Q9BYG0 378 aa12.76□□□□□ -0.37
COL6A3-209ENST00000472056 ACTR10Q9NZ32 417 aa12.76□□□□□ -0.37
COL6A3-209ENST00000472056 CBY1Q9Y3M2 126 aa12.76□□□□□ -0.37
COL6A3-209ENST00000472056 ABCA1O95477 2261 aa12.76□□□□□ -0.37
COL6A3-209ENST00000472056 UNC119BA6NIH7 251 aa12.76□□□□□ -0.37
COL6A3-209ENST00000472056 GJE1A6NN92 205 aa12.76□□□□□ -0.37
COL6A3-209ENST00000472056 GPR137BO60478 399 aa12.76□□□□□ -0.37
COL6A3-209ENST00000472056 SIRPB2Q5JXA9 342 aa12.76□□□□□ -0.37
COL6A3-209ENST00000472056 C22orf42Q6IC83 251 aa12.76□□□□□ -0.37
COL6A3-209ENST00000472056 KRBA1A5PL33 1030 aa12.76□□□□□ -0.37
COL6A3-209ENST00000472056 S100A8P05109 93 aa12.76□□□□□ -0.37
COL6A3-209ENST00000472056 NDUFV2P19404 249 aa12.76□□□□□ -0.37
COL6A3-209ENST00000472056 NUDT6P53370 316 aa12.76□□□□□ -0.37
COL6A3-209ENST00000472056 PLP2Q04941 152 aa12.76□□□□□ -0.37
COL6A3-209ENST00000472056 ZNF674Q2M3X9 581 aa12.76□□□□□ -0.37
COL6A3-209ENST00000472056 UBE2NLQ5JXB2 153 aa12.76□□□□□ -0.37
COL6A3-209ENST00000472056 ZNF704Q6ZNC4 412 aaPredicted RBP12.76□□□□□ -0.37
COL6A3-209ENST00000472056 PLA2G15Q8NCC3 412 aa12.76□□□□□ -0.37
COL6A3-209ENST00000472056 FCRL3Q96P31 734 aaPredicted RBP12.76□□□□□ -0.37
COL6A3-209ENST00000472056 FAM212BQ9NTI7 297 aaPredicted RBP12.76□□□□□ -0.37
COL6A3-209ENST00000472056 MRPS17Q9Y2R5 130 aaKnown RBP12.76□□□□□ -0.37
COL6A3-209ENST00000472056 CACNG2Q9Y698 323 aa12.76□□□□□ -0.37
COL6A3-209ENST00000472056 ADRB3P13945 408 aa12.76□□□□□ -0.37
COL6A3-209ENST00000472056 THBS3P49746 956 aa12.76□□□□□ -0.37
COL6A3-209ENST00000472056 LDB1Q86U70 411 aaPredicted RBP12.76□□□□□ -0.37
COL6A3-209ENST00000472056 METTL4Q8N3J2 472 aa12.76□□□□□ -0.37
COL6A3-209ENST00000472056 SUMF2Q8NBJ7 301 aa12.76□□□□□ -0.37
COL6A3-209ENST00000472056 C7orf34Q96L11 122 aa12.76□□□□□ -0.37
COL6A3-209ENST00000472056 TEX10Q9NXF1 929 aaPredicted RBP12.76□□□□□ -0.37
COL6A3-209ENST00000472056 A0A1W2PS29 197 aa12.75□□□□□ -0.37
COL6A3-209ENST00000472056 FTCDNL1E5RQL4 147 aa12.75□□□□□ -0.37
COL6A3-209ENST00000472056 UGT2B7P16662 529 aa12.75□□□□□ -0.37
COL6A3-209ENST00000472056 KLRK1P26718 216 aa12.75□□□□□ -0.37
COL6A3-209ENST00000472056 BDKRB2P30411 391 aa12.75□□□□□ -0.37
COL6A3-209ENST00000472056 RAB40BQ12829 278 aa12.75□□□□□ -0.37
COL6A3-209ENST00000472056 C6orf136Q5SQH8 315 aa12.75□□□□□ -0.37
COL6A3-209ENST00000472056 DACT2Q5SW24 774 aa12.75□□□□□ -0.37
COL6A3-209ENST00000472056 TRAM1L1Q8N609 369 aa12.75□□□□□ -0.37
COL6A3-209ENST00000472056 ZNF417Q8TAU3 575 aa12.75□□□□□ -0.37
COL6A3-209ENST00000472056 GLYATL1Q969I3 302 aa12.75□□□□□ -0.37
COL6A3-209ENST00000472056 PLGP00747 810 aaPredicted RBP12.75□□□□□ -0.37
COL6A3-209ENST00000472056 PKLRP30613 574 aa12.75□□□□□ -0.37
COL6A3-209ENST00000472056 SRPXP78539 464 aa12.75□□□□□ -0.37
COL6A3-209ENST00000472056 TARBP2Q15633 366 aaKnown RBP12.75□□□□□ -0.37
COL6A3-209ENST00000472056 ITPRIPL2Q3MIP1 535 aa12.75□□□□□ -0.37
COL6A3-209ENST00000472056 TMEM173Q86WV6 379 aaPredicted RBP12.75□□□□□ -0.37
COL6A3-209ENST00000472056 LFNGQ8NES3 379 aa12.75□□□□□ -0.37
COL6A3-209ENST00000472056 UPRTQ96BW1 309 aa12.75□□□□□ -0.37
COL6A3-209ENST00000472056 LDHAL6BQ9BYZ2 381 aaPredicted RBP12.75□□□□□ -0.37
COL6A3-209ENST00000472056 TLE6Q9H808 572 aa12.75□□□□□ -0.37
COL6A3-209ENST00000472056 GPRC5BQ9NZH0 403 aa12.75□□□□□ -0.37
COL6A3-209ENST00000472056 ATG2BQ96BY7 2078 aa12.75□□□□□ -0.37
COL6A3-209ENST00000472056 MSI1O43347 362 aaKnown RBP12.75□□□□□ -0.37
COL6A3-209ENST00000472056 CLRN1P58418 232 aa12.75□□□□□ -0.37
COL6A3-209ENST00000472056 GALNT11Q8NCW6 608 aa12.75□□□□□ -0.37
COL6A3-209ENST00000472056 NPLQ9BXD5 320 aaPredicted RBP12.75□□□□□ -0.37
COL6A3-209ENST00000472056 SLC22A11Q9NSA0 550 aa12.75□□□□□ -0.37
COL6A3-209ENST00000472056 SALL4Q9UJQ4 1053 aa12.75□□□□□ -0.37
COL6A3-209ENST00000472056 H3BMQ9 156 aa12.75□□□□□ -0.37
COL6A3-209ENST00000472056 AKAIN1P0CW23 69 aa12.75□□□□□ -0.37
COL6A3-209ENST00000472056 RAC2P15153 192 aa12.75□□□□□ -0.37
COL6A3-209ENST00000472056 GABRR2P28476 465 aa12.75□□□□□ -0.37
COL6A3-209ENST00000472056 OR1D2P34982 312 aa12.75□□□□□ -0.37
COL6A3-209ENST00000472056 LURAP1Q96LR2 239 aa12.75□□□□□ -0.37
COL6A3-209ENST00000472056 COG8Q96MW5 612 aa12.75□□□□□ -0.37
COL6A3-209ENST00000472056 RNF32Q9H0A6 362 aa12.75□□□□□ -0.37
COL6A3-209ENST00000472056 TSPAN10Q9H1Z9 355 aaPredicted RBP12.75□□□□□ -0.37
COL6A3-209ENST00000472056 INPPL1O15357 1258 aa12.75□□□□□ -0.37
COL6A3-209ENST00000472056 CYB5BO43169 146 aa12.75□□□□□ -0.37
COL6A3-209ENST00000472056 BEND4Q6ZU67 534 aa12.75□□□□□ -0.37
COL6A3-209ENST00000472056 TMPRSS12Q86WS5 348 aa12.75□□□□□ -0.37
COL6A3-209ENST00000472056 OR13C3Q8NGS6 347 aa12.75□□□□□ -0.37
COL6A3-209ENST00000472056 TBX5Q99593 518 aa12.75□□□□□ -0.37
COL6A3-209ENST00000472056 SLC6A7Q99884 636 aa12.75□□□□□ -0.37
COL6A3-209ENST00000472056 SCML2Q9UQR0 700 aa12.75□□□□□ -0.37
COL6A3-209ENST00000472056 HLA-DQB2P05538 268 aa12.75□□□□□ -0.37
COL6A3-209ENST00000472056 ALAS2P22557 587 aa12.75□□□□□ -0.37
COL6A3-209ENST00000472056 BMXP51813 675 aa12.75□□□□□ -0.37
COL6A3-209ENST00000472056 MAP1SQ66K74 1059 aaPredicted RBP12.75□□□□□ -0.37
COL6A3-209ENST00000472056 OR9A1PQ8NGU1 263 aa12.75□□□□□ -0.37
COL6A3-209ENST00000472056 OR2T4Q8NH00 348 aa12.75□□□□□ -0.37
COL6A3-209ENST00000472056 ACSL6Q9UKU0 697 aa12.75□□□□□ -0.37
COL6A3-209ENST00000472056 SNNO75324 88 aaPredicted RBP12.75□□□□□ -0.37
COL6A3-209ENST00000472056 KLK1P06870 262 aa12.75□□□□□ -0.37
COL6A3-209ENST00000472056 GINS1Q14691 196 aa12.75□□□□□ -0.37
COL6A3-209ENST00000472056 BATFQ16520 125 aa12.75□□□□□ -0.37
COL6A3-209ENST00000472056 NOXRED1Q6NXP6 359 aa12.75□□□□□ -0.37
COL6A3-209ENST00000472056 DEFB128Q7Z7B8 93 aa12.75□□□□□ -0.37
COL6A3-209ENST00000472056 C1orf52Q8N6N3 182 aaKnown RBP12.75□□□□□ -0.37
COL6A3-209ENST00000472056 ZNF366Q8N895 744 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms