RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 GSTM5P46439 218 aa16.5■□□□□ 0.23
COL7A1-205ENST00000465238 ALDH9A1P49189 494 aa16.5■□□□□ 0.23
COL7A1-205ENST00000465238 ELAVL1Q15717 326 aaKnown RBP16.5■□□□□ 0.23
COL7A1-205ENST00000465238 PDCD2Q16342 344 aaPredicted RBP16.5■□□□□ 0.23
COL7A1-205ENST00000465238 H3F3CQ6NXT2 135 aa16.5■□□□□ 0.23
COL7A1-205ENST00000465238 TMEM132CQ8N3T6 1108 aa16.5■□□□□ 0.23
COL7A1-205ENST00000465238 OR4K14Q8NGD5 310 aa16.5■□□□□ 0.23
COL7A1-205ENST00000465238 CDC26Q8NHZ8 85 aa16.5■□□□□ 0.23
COL7A1-205ENST00000465238 M1APQ8TC57 530 aa16.5■□□□□ 0.23
COL7A1-205ENST00000465238 LRRC8CQ8TDW0 803 aa16.5■□□□□ 0.23
COL7A1-205ENST00000465238 C16orf78Q8WTQ4 265 aa16.5■□□□□ 0.23
COL7A1-205ENST00000465238 UCN3Q969E3 161 aa16.5■□□□□ 0.23
COL7A1-205ENST00000465238 RBM18Q96H35 190 aaKnown RBP16.5■□□□□ 0.23
COL7A1-205ENST00000465238 DGAT2Q96PD7 388 aa16.5■□□□□ 0.23
COL7A1-205ENST00000465238 ADAP2Q9NPF8 381 aa16.5■□□□□ 0.23
COL7A1-205ENST00000465238 PNPOQ9NVS9 261 aa16.5■□□□□ 0.23
COL7A1-205ENST00000465238 VTI1BQ9UEU0 232 aa16.5■□□□□ 0.23
COL7A1-205ENST00000465238 PSME2Q9UL46 239 aa16.5■□□□□ 0.23
COL7A1-205ENST00000465238 CLDN16Q9Y5I7 305 aa16.5■□□□□ 0.23
COL7A1-205ENST00000465238 CLCA3PQ9Y6N3 262 aa16.5■□□□□ 0.23
COL7A1-205ENST00000465238 ATP6AP2A0A1C7CYW4 349 aa16.49■□□□□ 0.23
COL7A1-205ENST00000465238 SAGE2PA6NJ88 616 aa16.49■□□□□ 0.23
COL7A1-205ENST00000465238 ENO4A6NNW6 628 aa16.49■□□□□ 0.23
COL7A1-205ENST00000465238 LSM1O15116 133 aaKnown RBP16.49■□□□□ 0.23
COL7A1-205ENST00000465238 ATP6AP2O75787 350 aa16.49■□□□□ 0.23
COL7A1-205ENST00000465238 UNC5CO95185 931 aa16.49■□□□□ 0.23
COL7A1-205ENST00000465238 IL3P08700 152 aa16.49■□□□□ 0.23
COL7A1-205ENST00000465238 COX7A2P14406 83 aa16.49■□□□□ 0.23
COL7A1-205ENST00000465238 DRD2P14416 443 aa16.49■□□□□ 0.23
COL7A1-205ENST00000465238 SLC26A5P58743 744 aa16.49■□□□□ 0.23
COL7A1-205ENST00000465238 IGLV3-21P80748 117 aaPredicted RBP16.49■□□□□ 0.23
COL7A1-205ENST00000465238 ZNF763Q0D2J5 394 aa16.49■□□□□ 0.23
COL7A1-205ENST00000465238 HEPACAMQ14CZ8 416 aa16.49■□□□□ 0.23
COL7A1-205ENST00000465238 KIAA0040Q15053 153 aa16.49■□□□□ 0.23
COL7A1-205ENST00000465238 TERF2Q15554 542 aa16.49■□□□□ 0.23
COL7A1-205ENST00000465238 ZNF800Q2TB10 664 aaPredicted RBP eCLIP16.49■□□□□ 0.23
COL7A1-205ENST00000465238 ATP6AP1LQ52LC2 224 aa16.49■□□□□ 0.23
COL7A1-205ENST00000465238 XKR7Q5GH72 579 aa16.49■□□□□ 0.23
COL7A1-205ENST00000465238 ACER2Q5QJU3 275 aa16.49■□□□□ 0.23
COL7A1-205ENST00000465238 AMER2Q8N7J2 671 aa16.49■□□□□ 0.23
COL7A1-205ENST00000465238 DAZLQ92904 295 aaKnown RBP16.49■□□□□ 0.23
COL7A1-205ENST00000465238 TUBGCP3Q96CW5 907 aa16.49■□□□□ 0.23
COL7A1-205ENST00000465238 C3orf30Q96M34 536 aa16.49■□□□□ 0.23
COL7A1-205ENST00000465238 PELOQ9BRX2 385 aaKnown RBP16.49■□□□□ 0.23
COL7A1-205ENST00000465238 SEC14L3Q9UDX4 400 aa16.49■□□□□ 0.23
COL7A1-205ENST00000465238 WBP11Q9Y2W2 641 aaKnown RBP16.49■□□□□ 0.23
COL7A1-205ENST00000465238 TMED5Q9Y3A6 229 aa16.49■□□□□ 0.23
COL7A1-205ENST00000465238 PCDHGB6Q9Y5F9 930 aa16.49■□□□□ 0.23
COL7A1-205ENST00000465238 APCP25054 2843 aa16.48■□□□□ 0.23
COL7A1-205ENST00000465238 HNRNPRO43390 633 aaKnown RBP16.48■□□□□ 0.23
COL7A1-205ENST00000465238 DYRK3O43781 588 aa16.48■□□□□ 0.23
COL7A1-205ENST00000465238 OR10H2O60403 315 aa16.48■□□□□ 0.23
COL7A1-205ENST00000465238 PEX11AO75192 247 aa16.48■□□□□ 0.23
COL7A1-205ENST00000465238 ALOX15P16050 662 aaPredicted RBP16.48■□□□□ 0.23
COL7A1-205ENST00000465238 MAPK1P28482 360 aa16.48■□□□□ 0.23
COL7A1-205ENST00000465238 STT3AP46977 705 aa16.48■□□□□ 0.23
COL7A1-205ENST00000465238 RPL38P63173 70 aaKnown RBP16.48■□□□□ 0.23
COL7A1-205ENST00000465238 PLIN5Q00G26 463 aa16.48■□□□□ 0.23
COL7A1-205ENST00000465238 OCRLQ01968 901 aa16.48■□□□□ 0.23
COL7A1-205ENST00000465238 C2orf80Q0P641 193 aa16.48■□□□□ 0.23
COL7A1-205ENST00000465238 RFTN2Q52LD8 501 aaPredicted RBP16.48■□□□□ 0.23
COL7A1-205ENST00000465238 ZNF766Q5HY98 468 aa16.48■□□□□ 0.23
COL7A1-205ENST00000465238 SLC48A1Q6P1K1 146 aa16.48■□□□□ 0.23
COL7A1-205ENST00000465238 KCNK13Q9HB14 408 aa16.48■□□□□ 0.23
COL7A1-205ENST00000465238 MMP25Q9NPA2 562 aa16.48■□□□□ 0.23
COL7A1-205ENST00000465238 MED4Q9NPJ6 270 aa16.48■□□□□ 0.23
COL7A1-205ENST00000465238 SUCOQ9UBS9 1254 aaKnown RBP16.48■□□□□ 0.23
COL7A1-205ENST00000465238 C17orf105B2RV13 164 aa16.47■□□□□ 0.23
COL7A1-205ENST00000465238 SLCO1B7G3V0H7 640 aa16.47■□□□□ 0.23
COL7A1-205ENST00000465238 ERAL1O75616 437 aaKnown RBP16.47■□□□□ 0.23
COL7A1-205ENST00000465238 SLC35E2P0CK97 266 aa16.47■□□□□ 0.23
COL7A1-205ENST00000465238 MST1P26927 711 aa16.47■□□□□ 0.23
COL7A1-205ENST00000465238 XKP51811 444 aa16.47■□□□□ 0.23
COL7A1-205ENST00000465238 RBPJQ06330 500 aa16.47■□□□□ 0.23
COL7A1-205ENST00000465238 MEP1AQ16819 746 aa16.47■□□□□ 0.23
COL7A1-205ENST00000465238 C6orf136Q5SQH8 315 aa16.47■□□□□ 0.23
COL7A1-205ENST00000465238 MTFR2Q6P444 385 aa16.47■□□□□ 0.23
COL7A1-205ENST00000465238 CRLF3Q8IUI8 442 aa16.47■□□□□ 0.23
COL7A1-205ENST00000465238 ST13P4Q8IZP2 240 aaPredicted RBP16.47■□□□□ 0.23
COL7A1-205ENST00000465238 MMP21Q8N119 569 aa16.47■□□□□ 0.23
COL7A1-205ENST00000465238 BEST3Q8N1M1 668 aa16.47■□□□□ 0.23
COL7A1-205ENST00000465238 ARFGAP2Q8N6H7 521 aa16.47■□□□□ 0.23
COL7A1-205ENST00000465238 MORN4Q8NDC4 146 aa16.47■□□□□ 0.23
COL7A1-205ENST00000465238 NFAM1Q8NET5 270 aaPredicted RBP16.47■□□□□ 0.23
COL7A1-205ENST00000465238 B3GNT7Q8NFL0 401 aa16.47■□□□□ 0.23
COL7A1-205ENST00000465238 OR14A16Q8NHC5 309 aa16.47■□□□□ 0.23
COL7A1-205ENST00000465238 PTPMT1Q8WUK0 201 aaPredicted RBP16.47■□□□□ 0.23
COL7A1-205ENST00000465238 PPWD1Q96BP3 646 aaKnown RBP16.47■□□□□ 0.23
COL7A1-205ENST00000465238 KLHL29Q96CT2 875 aa16.47■□□□□ 0.23
COL7A1-205ENST00000465238 PPP1R36Q96LQ0 422 aa16.47■□□□□ 0.23
COL7A1-205ENST00000465238 MYNNQ9NPC7 610 aa16.47■□□□□ 0.23
COL7A1-205ENST00000465238 HEY2Q9UBP5 337 aa16.47■□□□□ 0.23
COL7A1-205ENST00000465238 GIMAP2Q9UG22 337 aa16.47■□□□□ 0.23
COL7A1-205ENST00000465238 CES1P1Q9UKY3 287 aa16.47■□□□□ 0.23
COL7A1-205ENST00000465238 ZNF780BQ9Y6R6 833 aa16.47■□□□□ 0.23
COL7A1-205ENST00000465238 PCNX1Q96RV3 2341 aa16.46■□□□□ 0.23
COL7A1-205ENST00000465238 TRGV8A0A0C4DH27 118 aa16.46■□□□□ 0.23
COL7A1-205ENST00000465238 PRSS44E7EML9 344 aa16.46■□□□□ 0.23
COL7A1-205ENST00000465238 JUNP05412 331 aaKnown RBP16.46■□□□□ 0.23
COL7A1-205ENST00000465238 KITP10721 976 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms