RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 ACOT13Q9NPJ3 140 aa12.73□□□□□ -0.37
USP40-208ENST00000450966 FBXO8Q9NRD0 319 aa12.73□□□□□ -0.37
USP40-208ENST00000450966 ZFP57Q9NU63 452 aa12.73□□□□□ -0.37
USP40-208ENST00000450966 FLRT1Q9NZU1 646 aa12.73□□□□□ -0.37
USP40-208ENST00000450966 GGT3PA6NGU5 568 aa12.73□□□□□ -0.37
USP40-208ENST00000450966 WTIPA6NIX2 430 aaPredicted RBP12.73□□□□□ -0.37
USP40-208ENST00000450966 PHYHO14832 338 aa12.73□□□□□ -0.37
USP40-208ENST00000450966 HNRNPA1P09651 372 aaKnown RBP eCLIP12.73□□□□□ -0.37
USP40-208ENST00000450966 S100A11P31949 105 aa12.73□□□□□ -0.37
USP40-208ENST00000450966 GGT2P36268 569 aa12.73□□□□□ -0.37
USP40-208ENST00000450966 PCP4P48539 62 aa12.73□□□□□ -0.37
USP40-208ENST00000450966 KCNQ1P51787 676 aa12.73□□□□□ -0.37
USP40-208ENST00000450966 MAD2L1BPQ15013 274 aaPredicted RBP12.73□□□□□ -0.37
USP40-208ENST00000450966 SLC35B4Q969S0 331 aa12.73□□□□□ -0.37
USP40-208ENST00000450966 TMEM72A0PK05 275 aa12.73□□□□□ -0.37
USP40-208ENST00000450966 RGS13O14921 159 aa12.73□□□□□ -0.37
USP40-208ENST00000450966 TGFB1I1O43294 461 aa12.73□□□□□ -0.37
USP40-208ENST00000450966 VIPP01282 170 aa12.73□□□□□ -0.37
USP40-208ENST00000450966 SSR2P43308 183 aa12.73□□□□□ -0.37
USP40-208ENST00000450966 TAS2R39P59534 338 aa12.73□□□□□ -0.37
USP40-208ENST00000450966 MAP4K2Q12851 820 aa12.73□□□□□ -0.37
USP40-208ENST00000450966 GNMTQ14749 295 aa12.73□□□□□ -0.37
USP40-208ENST00000450966 UBE2R2Q712K3 238 aaPredicted RBP12.73□□□□□ -0.37
USP40-208ENST00000450966 OR8J1Q8NGP2 316 aa12.73□□□□□ -0.37
USP40-208ENST00000450966 OR56B4Q8NH76 319 aa12.73□□□□□ -0.37
USP40-208ENST00000450966 OVCA2Q8WZ82 227 aa12.73□□□□□ -0.37
USP40-208ENST00000450966 COQ8BQ96D53 544 aa12.73□□□□□ -0.37
USP40-208ENST00000450966 OTUB2Q96DC9 234 aa12.73□□□□□ -0.37
USP40-208ENST00000450966 C14orf79Q96F83 325 aa12.73□□□□□ -0.37
USP40-208ENST00000450966 PTCHD1Q96NR3 888 aa12.73□□□□□ -0.37
USP40-208ENST00000450966 DCLRE1CQ96SD1 692 aaKnown RBP12.73□□□□□ -0.37
USP40-208ENST00000450966 TBX5Q99593 518 aa12.73□□□□□ -0.37
USP40-208ENST00000450966 SPNS1Q9H2V7 528 aa12.73□□□□□ -0.37
USP40-208ENST00000450966 GMPR2Q9P2T1 348 aaKnown RBP12.73□□□□□ -0.37
USP40-208ENST00000450966 PLEKHM1Q9Y4G2 1056 aa12.73□□□□□ -0.37
USP40-208ENST00000450966 LOC285095A0A1B0GVY8 99 aa12.73□□□□□ -0.37
USP40-208ENST00000450966 PRORSD1PA6NEY8 169 aa12.73□□□□□ -0.37
USP40-208ENST00000450966 TNFRSF10BO14763 440 aa12.73□□□□□ -0.37
USP40-208ENST00000450966 PIRTP0C851 137 aa12.73□□□□□ -0.37
USP40-208ENST00000450966 ACRP10323 421 aa12.73□□□□□ -0.37
USP40-208ENST00000450966 MAP3K8P41279 467 aa12.73□□□□□ -0.37
USP40-208ENST00000450966 TCEANCQ8N8B7 351 aa12.73□□□□□ -0.37
USP40-208ENST00000450966 BOLLQ8N9W6 283 aaKnown RBP12.73□□□□□ -0.37
USP40-208ENST00000450966 ZNF527Q8NB42 609 aa12.73□□□□□ -0.37
USP40-208ENST00000450966 BTF3L4Q96K17 158 aa12.73□□□□□ -0.37
USP40-208ENST00000450966 SUSD3Q96L08 255 aa12.73□□□□□ -0.37
USP40-208ENST00000450966 CDCA3Q99618 268 aaPredicted RBP12.73□□□□□ -0.37
USP40-208ENST00000450966 MICU1Q9BPX6 476 aa12.73□□□□□ -0.37
USP40-208ENST00000450966 PRDM9Q9NQV7 894 aa12.73□□□□□ -0.37
USP40-208ENST00000450966 TMEM233B4DJY2 109 aa12.73□□□□□ -0.37
USP40-208ENST00000450966 MAN2B1O00754 1011 aa12.73□□□□□ -0.37
USP40-208ENST00000450966 SEC14L5O43304 696 aa12.73□□□□□ -0.37
USP40-208ENST00000450966 LATS1O95835 1130 aa12.73□□□□□ -0.37
USP40-208ENST00000450966 PNLIPRP1P54315 467 aa12.73□□□□□ -0.37
USP40-208ENST00000450966 CREB5Q02930 508 aa12.73□□□□□ -0.37
USP40-208ENST00000450966 TBCEQ15813 527 aaPredicted RBP12.73□□□□□ -0.37
USP40-208ENST00000450966 PRPF38BQ5VTL8 546 aaKnown RBP12.73□□□□□ -0.37
USP40-208ENST00000450966 OR10K2Q6IF99 312 aa12.73□□□□□ -0.37
USP40-208ENST00000450966 CHRDL2Q6WN34 429 aa12.73□□□□□ -0.37
USP40-208ENST00000450966 GALNT13Q8IUC8 556 aa12.73□□□□□ -0.37
USP40-208ENST00000450966 SLC7A13Q8TCU3 470 aa12.73□□□□□ -0.37
USP40-208ENST00000450966 PCNPQ8WW12 178 aaKnown RBP12.73□□□□□ -0.37
USP40-208ENST00000450966 NKD1Q969G9 470 aa12.73□□□□□ -0.37
USP40-208ENST00000450966 RAB11FIP5Q9BXF6 653 aa12.73□□□□□ -0.37
USP40-208ENST00000450966 SAMD10Q9BYL1 202 aa12.73□□□□□ -0.37
USP40-208ENST00000450966 NOCTQ9UK39 431 aaKnown RBP12.73□□□□□ -0.37
USP40-208ENST00000450966 TEX13DA0A0J9YY54 714 aaPredicted RBP12.72□□□□□ -0.37
USP40-208ENST00000450966 TCRBV3S1A0A5B6 114 aa12.72□□□□□ -0.37
USP40-208ENST00000450966 H7C417 338 aa12.72□□□□□ -0.37
USP40-208ENST00000450966 RPP40O75818 363 aaKnown RBP12.72□□□□□ -0.37
USP40-208ENST00000450966 OR8U9P0C7N5 309 aa12.72□□□□□ -0.37
USP40-208ENST00000450966 PKMP14618 531 aaKnown RBP12.72□□□□□ -0.37
USP40-208ENST00000450966 GLP1RP43220 463 aa12.72□□□□□ -0.37
USP40-208ENST00000450966 CAMK2BQ13554 666 aa12.72□□□□□ -0.37
USP40-208ENST00000450966 TCTE1Q5JU00 501 aa12.72□□□□□ -0.37
USP40-208ENST00000450966 MCEMP1Q8IX19 187 aa12.72□□□□□ -0.37
USP40-208ENST00000450966 SKA3Q8IX90 412 aa12.72□□□□□ -0.37
USP40-208ENST00000450966 OR6M1Q8NGM8 313 aa12.72□□□□□ -0.37
USP40-208ENST00000450966 METTL21AQ8WXB1 218 aa12.72□□□□□ -0.37
USP40-208ENST00000450966 TOLLIPQ9H0E2 274 aa12.72□□□□□ -0.37
USP40-208ENST00000450966 METTL17Q9H7H0 456 aaPredicted RBP12.72□□□□□ -0.37
USP40-208ENST00000450966 GLOD4Q9HC38 313 aa12.72□□□□□ -0.37
USP40-208ENST00000450966 LCHNA4D1U4 455 aa12.72□□□□□ -0.37
USP40-208ENST00000450966 SDHDO14521 159 aa12.72□□□□□ -0.37
USP40-208ENST00000450966 STK16O75716 305 aa12.72□□□□□ -0.37
USP40-208ENST00000450966 F2P00734 622 aa12.72□□□□□ -0.37
USP40-208ENST00000450966 IL1AP01583 271 aa12.72□□□□□ -0.37
USP40-208ENST00000450966 PRPS1L1P21108 318 aa12.72□□□□□ -0.37
USP40-208ENST00000450966 CD9P21926 228 aa12.72□□□□□ -0.37
USP40-208ENST00000450966 IL1R2P27930 398 aa12.72□□□□□ -0.37
USP40-208ENST00000450966 ITPKBP27987 946 aa12.72□□□□□ -0.37
USP40-208ENST00000450966 SCNN1AP37088 669 aa12.72□□□□□ -0.37
USP40-208ENST00000450966 PSMD8P48556 350 aa12.72□□□□□ -0.37
USP40-208ENST00000450966 GRIK2Q13002 908 aa12.72□□□□□ -0.37
USP40-208ENST00000450966 CD276Q5ZPR3 534 aa12.72□□□□□ -0.37
USP40-208ENST00000450966 H3F3CQ6NXT2 135 aa12.72□□□□□ -0.37
USP40-208ENST00000450966 TMEM205Q6UW68 189 aa12.72□□□□□ -0.37
USP40-208ENST00000450966 TTC9Q92623 222 aa12.72□□□□□ -0.37
USP40-208ENST00000450966 SLC25A36Q96CQ1 311 aa12.72□□□□□ -0.37
USP40-208ENST00000450966 IL12RB2Q99665 862 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms