RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 PLEKHG7Q6ZR37 379 aa16.4■□□□□ 0.22
PTPRF-209ENST00000438120 TMPRSS12Q86WS5 348 aa16.4■□□□□ 0.22
PTPRF-209ENST00000438120 SLC25A44Q96H78 314 aaPredicted RBP16.4■□□□□ 0.22
PTPRF-209ENST00000438120 MRPL15Q9P015 296 aaKnown RBP16.4■□□□□ 0.22
PTPRF-209ENST00000438120 STOX2Q9P2F5 926 aaPredicted RBP16.4■□□□□ 0.22
PTPRF-209ENST00000438120 FAM189A1O60320 539 aa16.39■□□□□ 0.21
PTPRF-209ENST00000438120 RASAL1O95294 804 aa16.39■□□□□ 0.21
PTPRF-209ENST00000438120 SFTPBP07988 381 aa16.39■□□□□ 0.21
PTPRF-209ENST00000438120 KCTD18Q6PI47 426 aaPredicted RBP16.39■□□□□ 0.21
PTPRF-209ENST00000438120 FIGLAQ6QHK4 219 aa16.39■□□□□ 0.21
PTPRF-209ENST00000438120 APIPQ96GX9 242 aa16.39■□□□□ 0.21
PTPRF-209ENST00000438120 DLGAP1O14490 977 aa16.39■□□□□ 0.21
PTPRF-209ENST00000438120 FOXD2O60548 495 aaPredicted RBP16.39■□□□□ 0.21
PTPRF-209ENST00000438120 SLC16A8O95907 504 aa16.39■□□□□ 0.21
PTPRF-209ENST00000438120 TFPTP0C1Z6 253 aa16.39■□□□□ 0.21
PTPRF-209ENST00000438120 HRH2P25021 359 aa16.39■□□□□ 0.21
PTPRF-209ENST00000438120 SELENOVP59797 346 aa16.39■□□□□ 0.21
PTPRF-209ENST00000438120 FAM189A2Q15884 450 aa16.39■□□□□ 0.21
PTPRF-209ENST00000438120 CHRFAM7AQ494W8 412 aa16.39■□□□□ 0.21
PTPRF-209ENST00000438120 BLOC1S3Q6QNY0 202 aa16.39■□□□□ 0.21
PTPRF-209ENST00000438120 SYNPOQ8N3V7 929 aa16.39■□□□□ 0.21
PTPRF-209ENST00000438120 CREB3L4Q8TEY5 395 aa16.39■□□□□ 0.21
PTPRF-209ENST00000438120 HDAC2Q92769 488 aaKnown RBP16.39■□□□□ 0.21
PTPRF-209ENST00000438120 PGAM5Q96HS1 289 aa16.39■□□□□ 0.21
PTPRF-209ENST00000438120 FIZ1Q96SL8 496 aa16.39■□□□□ 0.21
PTPRF-209ENST00000438120 CCM2LQ9NUG4 571 aaPredicted RBP16.39■□□□□ 0.21
PTPRF-209ENST00000438120 SEMA4FO95754 770 aa16.39■□□□□ 0.21
PTPRF-209ENST00000438120 LAMP1P11279 417 aa16.39■□□□□ 0.21
PTPRF-209ENST00000438120 IST1P53990 364 aa16.39■□□□□ 0.21
PTPRF-209ENST00000438120 ERVPABLB-1P60509 514 aa16.39■□□□□ 0.21
PTPRF-209ENST00000438120 UGT3A2Q3SY77 523 aa16.39■□□□□ 0.21
PTPRF-209ENST00000438120 KANK2Q63ZY3 851 aa16.39■□□□□ 0.21
PTPRF-209ENST00000438120 PEX13Q92968 403 aa16.39■□□□□ 0.21
PTPRF-209ENST00000438120 FUBP1Q96AE4 644 aaKnown RBP16.39■□□□□ 0.21
PTPRF-209ENST00000438120 TRIB3Q96RU7 358 aa16.39■□□□□ 0.21
PTPRF-209ENST00000438120 RMI1Q9H9A7 625 aa16.39■□□□□ 0.21
PTPRF-209ENST00000438120 C10orf71Q711Q0 1435 aa16.39■□□□□ 0.21
PTPRF-209ENST00000438120 C5AR1P21730 350 aa16.39■□□□□ 0.21
PTPRF-209ENST00000438120 CD68P34810 354 aaPredicted RBP16.39■□□□□ 0.21
PTPRF-209ENST00000438120 MAGEA2P43356 314 aa16.39■□□□□ 0.21
PTPRF-209ENST00000438120 SCAPQ12770 1279 aa16.39■□□□□ 0.21
PTPRF-209ENST00000438120 OR52E8Q6IFG1 317 aa16.39■□□□□ 0.21
PTPRF-209ENST00000438120 XKRXQ6PP77 449 aa16.39■□□□□ 0.21
PTPRF-209ENST00000438120 OR52E2Q8NGJ4 325 aa16.39■□□□□ 0.21
PTPRF-209ENST00000438120 OR5AR1Q8NGP9 310 aa16.39■□□□□ 0.21
PTPRF-209ENST00000438120 DIO2Q92813 273 aa16.39■□□□□ 0.21
PTPRF-209ENST00000438120 LRR1Q96L50 414 aa16.39■□□□□ 0.21
PTPRF-209ENST00000438120 GPR52Q9Y2T5 361 aa16.39■□□□□ 0.21
PTPRF-209ENST00000438120 A6NLC8 198 aa16.39■□□□□ 0.21
PTPRF-209ENST00000438120 MAS1P04201 325 aa16.39■□□□□ 0.21
PTPRF-209ENST00000438120 CRISP1P54107 249 aa16.39■□□□□ 0.21
PTPRF-209ENST00000438120 FCRLBQ6BAA4 426 aa16.39■□□□□ 0.21
PTPRF-209ENST00000438120 LAS2Q8IYD9 372 aa16.39■□□□□ 0.21
PTPRF-209ENST00000438120 ZNF100Q8IYN0 542 aa16.39■□□□□ 0.21
PTPRF-209ENST00000438120 SGTBQ96EQ0 304 aa16.39■□□□□ 0.21
PTPRF-209ENST00000438120 KCMF1Q9P0J7 381 aa16.39■□□□□ 0.21
PTPRF-209ENST00000438120 PCDHGB6Q9Y5F9 930 aa16.39■□□□□ 0.21
PTPRF-209ENST00000438120 FESP07332 822 aa16.38■□□□□ 0.21
PTPRF-209ENST00000438120 TMPPEQ6ZT21 453 aa16.38■□□□□ 0.21
PTPRF-209ENST00000438120 C16orf78Q8WTQ4 265 aa16.38■□□□□ 0.21
PTPRF-209ENST00000438120 POU2F3Q9UKI9 436 aa16.38■□□□□ 0.21
PTPRF-209ENST00000438120 TRBV2A0A0J9YWF9 115 aa16.38■□□□□ 0.21
PTPRF-209ENST00000438120 KCNJ13O60928 360 aa16.38■□□□□ 0.21
PTPRF-209ENST00000438120 GPR143P51810 404 aa16.38■□□□□ 0.21
PTPRF-209ENST00000438120 TAS2R38P59533 333 aa16.38■□□□□ 0.21
PTPRF-209ENST00000438120 C6orf141Q5SZD1 244 aa16.38■□□□□ 0.21
PTPRF-209ENST00000438120 ZNF367Q7RTV3 350 aa16.38■□□□□ 0.21
PTPRF-209ENST00000438120 OR13C3Q8NGS6 347 aa16.38■□□□□ 0.21
PTPRF-209ENST00000438120 LIPT1Q9Y234 373 aa16.38■□□□□ 0.21
PTPRF-209ENST00000438120 HSPB11Q9Y547 144 aa16.38■□□□□ 0.21
PTPRF-209ENST00000438120 SLITRK5O94991 958 aa16.38■□□□□ 0.21
PTPRF-209ENST00000438120 MT-ND2P03891 347 aa16.38■□□□□ 0.21
PTPRF-209ENST00000438120 MOGSQ13724 837 aa16.38■□□□□ 0.21
PTPRF-209ENST00000438120 MOGQ16653 247 aa16.38■□□□□ 0.21
PTPRF-209ENST00000438120 CDKL4Q5MAI5 379 aa16.38■□□□□ 0.21
PTPRF-209ENST00000438120 ARSKQ6UWY0 536 aa16.38■□□□□ 0.21
PTPRF-209ENST00000438120 FIBINQ8TAL6 211 aa16.38■□□□□ 0.21
PTPRF-209ENST00000438120 TMEM19Q96HH6 336 aa16.38■□□□□ 0.21
PTPRF-209ENST00000438120 FAM210AQ96ND0 272 aa16.38■□□□□ 0.21
PTPRF-209ENST00000438120 HERPUD2Q9BSE4 406 aa16.38■□□□□ 0.21
PTPRF-209ENST00000438120 TCHHQ07283 1943 aa16.38■□□□□ 0.21
PTPRF-209ENST00000438120 HSD3B1P14060 373 aa16.38■□□□□ 0.21
PTPRF-209ENST00000438120 HSD3B2P26439 372 aa16.38■□□□□ 0.21
PTPRF-209ENST00000438120 FAM76BQ5HYJ3 339 aa16.38■□□□□ 0.21
PTPRF-209ENST00000438120 OR4K13Q8NH42 304 aa16.38■□□□□ 0.21
PTPRF-209ENST00000438120 RFT1Q96AA3 541 aa16.38■□□□□ 0.21
PTPRF-209ENST00000438120 STARD5Q9NSY2 213 aa16.38■□□□□ 0.21
PTPRF-209ENST00000438120 SPEF2Q9C093 1822 aa16.38■□□□□ 0.21
PTPRF-209ENST00000438120 NALCNQ8IZF0 1738 aa16.38■□□□□ 0.21
PTPRF-209ENST00000438120 CYBAP13498 195 aa16.38■□□□□ 0.21
PTPRF-209ENST00000438120 EEF1AKMT2Q5JPI9 291 aaKnown RBP16.38■□□□□ 0.21
PTPRF-209ENST00000438120 TMEM69Q5SWH9 247 aa16.38■□□□□ 0.21
PTPRF-209ENST00000438120 LRIF1Q5T3J3 769 aa16.38■□□□□ 0.21
PTPRF-209ENST00000438120 AKAP1Q92667 903 aaKnown RBP eCLIP16.38■□□□□ 0.215e-7■■■■□ 19.4
PTPRF-209ENST00000438120 OR10A4Q9H209 315 aa16.38■□□□□ 0.21
PTPRF-209ENST00000438120 RARRES3Q9UL19 164 aa16.38■□□□□ 0.21
PTPRF-209ENST00000438120 IGKV6-21A0A0C4DH24 114 aa16.37■□□□□ 0.21
PTPRF-209ENST00000438120 NPIPB15A6NHN6 443 aaPredicted RBP16.37■□□□□ 0.21
PTPRF-209ENST00000438120 ARSAP15289 507 aa16.37■□□□□ 0.21
PTPRF-209ENST00000438120 PGCP20142 388 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms