RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 TEX10Q9NXF1 929 aaPredicted RBP7.41□□□□□ -1.22
VIM-202ENST00000421459 CNIH4Q9P003 139 aa7.41□□□□□ -1.22
VIM-202ENST00000421459 ZNF629Q9UEG4 869 aaPredicted RBP7.41□□□□□ -1.22
VIM-202ENST00000421459 DTX4Q9Y2E6 619 aa7.41□□□□□ -1.22
VIM-202ENST00000421459 INTS1Q8N201 2190 aaKnown RBP7.41□□□□□ -1.22
VIM-202ENST00000421459 NCKAP5O14513 1909 aa7.4□□□□□ -1.22
VIM-202ENST00000421459 EML6Q6ZMW3 1958 aa7.4□□□□□ -1.22
VIM-202ENST00000421459 PHF3Q92576 2039 aaKnown RBP7.4□□□□□ -1.22
VIM-202ENST00000421459 C2orf92A0A1B0GVN3 265 aa7.4□□□□□ -1.22
VIM-202ENST00000421459 TCRBV9S1A1TA0A576 114 aa7.4□□□□□ -1.22
VIM-202ENST00000421459 FAM47E-STBD1D6RA91 191 aa7.4□□□□□ -1.22
VIM-202ENST00000421459 K7EPI3 171 aa7.4□□□□□ -1.22
VIM-202ENST00000421459 CES2O00748 559 aa7.4□□□□□ -1.22
VIM-202ENST00000421459 DYRK3O43781 588 aa7.4□□□□□ -1.22
VIM-202ENST00000421459 NME6O75414 186 aaPredicted RBP7.4□□□□□ -1.22
VIM-202ENST00000421459 IL2RAP01589 272 aa7.4□□□□□ -1.22
VIM-202ENST00000421459 S100BP04271 92 aaPredicted RBP7.4□□□□□ -1.22
VIM-202ENST00000421459 HPNP05981 417 aa7.4□□□□□ -1.22
VIM-202ENST00000421459 FAM58BPP0C7Q3 252 aa7.4□□□□□ -1.22
VIM-202ENST00000421459 SLC35E2BP0CK96 405 aa7.4□□□□□ -1.22
VIM-202ENST00000421459 MTHFD2P13995 350 aa7.4□□□□□ -1.22
VIM-202ENST00000421459 CD53P19397 219 aa7.4□□□□□ -1.22
VIM-202ENST00000421459 HOXC12P31275 282 aa7.4□□□□□ -1.22
VIM-202ENST00000421459 TIMP3P35625 211 aa7.4□□□□□ -1.22
VIM-202ENST00000421459 CASP3P42574 277 aa7.4□□□□□ -1.22
VIM-202ENST00000421459 CDK9P50750 372 aaKnown RBP7.4□□□□□ -1.22
VIM-202ENST00000421459 RAB10P61026 200 aa7.4□□□□□ -1.22
VIM-202ENST00000421459 ATP6V0D1P61421 351 aa7.4□□□□□ -1.22
VIM-202ENST00000421459 SRYQ05066 204 aa7.4□□□□□ -1.22
VIM-202ENST00000421459 ZKSCAN8Q15776 578 aaPredicted RBP7.4□□□□□ -1.22
VIM-202ENST00000421459 NNATQ16517 81 aa7.4□□□□□ -1.22
VIM-202ENST00000421459 FBXL19-AS1Q494R0 122 aa7.4□□□□□ -1.22
VIM-202ENST00000421459 CDKL4Q5MAI5 379 aa7.4□□□□□ -1.22
VIM-202ENST00000421459 NSUN5P2Q63ZY6 315 aa7.4□□□□□ -1.22
VIM-202ENST00000421459 VASNQ6EMK4 673 aa7.4□□□□□ -1.22
VIM-202ENST00000421459 GRHL2Q6ISB3 625 aa7.4□□□□□ -1.22
VIM-202ENST00000421459 RAPH1Q70E73 1250 aa7.4□□□□□ -1.22
VIM-202ENST00000421459 LRRC70Q7Z2Q7 622 aa7.4□□□□□ -1.22
VIM-202ENST00000421459 MAATS1Q7Z4T9 603 aa7.4□□□□□ -1.22
VIM-202ENST00000421459 LACC1Q8IV20 430 aa7.4□□□□□ -1.22
VIM-202ENST00000421459 CIARTQ8N365 385 aaPredicted RBP7.4□□□□□ -1.22
VIM-202ENST00000421459 ZNF615Q8N8J6 731 aa7.4□□□□□ -1.22
VIM-202ENST00000421459 RDH11Q8TC12 318 aa7.4□□□□□ -1.22
VIM-202ENST00000421459 PYROXD1Q8WU10 500 aa7.4□□□□□ -1.22
VIM-202ENST00000421459 KCTD4Q8WVF5 259 aa7.4□□□□□ -1.22
VIM-202ENST00000421459 ABTB1Q969K4 478 aaPredicted RBP7.4□□□□□ -1.22
VIM-202ENST00000421459 NXNL1Q96CM4 212 aa7.4□□□□□ -1.22
VIM-202ENST00000421459 MBD6Q96DN6 1003 aa7.4□□□□□ -1.22
VIM-202ENST00000421459 TSPAN17Q96FV3 270 aa7.4□□□□□ -1.22
VIM-202ENST00000421459 ZNF597Q96LX8 424 aa7.4□□□□□ -1.22
VIM-202ENST00000421459 ATOH8Q96SQ7 321 aa7.4□□□□□ -1.22
VIM-202ENST00000421459 ANGPTL4Q9BY76 406 aa7.4□□□□□ -1.22
VIM-202ENST00000421459 PRDM14Q9GZV8 571 aa7.4□□□□□ -1.22
VIM-202ENST00000421459 UBQLN3Q9H347 655 aa7.4□□□□□ -1.22
VIM-202ENST00000421459 KCNF1Q9H3M0 494 aa7.4□□□□□ -1.22
VIM-202ENST00000421459 GALNT9Q9HCQ5 603 aa7.4□□□□□ -1.22
VIM-202ENST00000421459 NSMCE4AQ9NXX6 385 aa7.4□□□□□ -1.22
VIM-202ENST00000421459 EHD3Q9NZN3 535 aa7.4□□□□□ -1.22
VIM-202ENST00000421459 OPTCQ9UBM4 332 aa7.4□□□□□ -1.22
VIM-202ENST00000421459 MTRF1LQ9UGC7 380 aaKnown RBP7.4□□□□□ -1.22
VIM-202ENST00000421459 C15orf41Q9Y2V0 281 aa7.4□□□□□ -1.22
VIM-202ENST00000421459 RNF11Q9Y3C5 154 aa7.4□□□□□ -1.22
VIM-202ENST00000421459 NPFFR2Q9Y5X5 522 aa7.4□□□□□ -1.22
VIM-202ENST00000421459 KIAA1549Q9HCM3 1950 aa7.4□□□□□ -1.23
VIM-202ENST00000421459 A0A0A6YYD5 115 aa7.39□□□□□ -1.23
VIM-202ENST00000421459 ANKRD33BA6NCL7 494 aa7.39□□□□□ -1.23
VIM-202ENST00000421459 SYNDIG1LA6NDD5 238 aa7.39□□□□□ -1.23
VIM-202ENST00000421459 FAM159BA6NKW6 160 aa7.39□□□□□ -1.23
VIM-202ENST00000421459 CLCA1A8K7I4 914 aa7.39□□□□□ -1.23
VIM-202ENST00000421459 SIX3O95343 332 aaPredicted RBP7.39□□□□□ -1.23
VIM-202ENST00000421459 HRGP04196 525 aa7.39□□□□□ -1.23
VIM-202ENST00000421459 SLC35E2P0CK97 266 aa7.39□□□□□ -1.23
VIM-202ENST00000421459 NR2F6P10588 404 aa7.39□□□□□ -1.23
VIM-202ENST00000421459 FOSL1P15407 271 aa7.39□□□□□ -1.23
VIM-202ENST00000421459 EPB42P16452 691 aa7.39□□□□□ -1.23
VIM-202ENST00000421459 S1PR1P21453 382 aa7.39□□□□□ -1.23
VIM-202ENST00000421459 TCEA1P23193 301 aaKnown RBP7.39□□□□□ -1.23
VIM-202ENST00000421459 CTSSP25774 331 aa7.39□□□□□ -1.23
VIM-202ENST00000421459 PTPN6P29350 595 aa7.39□□□□□ -1.23
VIM-202ENST00000421459 ADSLP30566 484 aaPredicted RBP7.39□□□□□ -1.23
VIM-202ENST00000421459 TLX1P31314 330 aaPredicted RBP7.39□□□□□ -1.23
VIM-202ENST00000421459 BUD31P41223 144 aaPredicted RBP7.39□□□□□ -1.23
VIM-202ENST00000421459 MASP1P48740 699 aa7.39□□□□□ -1.23
VIM-202ENST00000421459 STARP49675 285 aa7.39□□□□□ -1.23
VIM-202ENST00000421459 DUSP2Q05923 314 aa7.39□□□□□ -1.23
VIM-202ENST00000421459 SLMAPQ14BN4 828 aa7.39□□□□□ -1.23
VIM-202ENST00000421459 EXOSC7Q15024 291 aaKnown RBP7.39□□□□□ -1.23
VIM-202ENST00000421459 RPS6KA2Q15349 733 aa7.39□□□□□ -1.23
VIM-202ENST00000421459 TRADDQ15628 312 aa7.39□□□□□ -1.23
VIM-202ENST00000421459 CPSF6Q16630 551 aaKnown RBP eCLIP7.39□□□□□ -1.23
VIM-202ENST00000421459 PFKFB4Q16877 469 aa7.39□□□□□ -1.23
VIM-202ENST00000421459 SPRED3Q2MJR0 410 aa7.39□□□□□ -1.23
VIM-202ENST00000421459 FAM180BQ6P0A1 224 aa7.39□□□□□ -1.23
VIM-202ENST00000421459 FAM111BQ6SJ93 734 aa7.39□□□□□ -1.23
VIM-202ENST00000421459 CYP20A1Q6UW02 462 aa7.39□□□□□ -1.23
VIM-202ENST00000421459 CLEC9AQ6UXN8 241 aa7.39□□□□□ -1.23
VIM-202ENST00000421459 C3orf62Q6ZUJ4 267 aa7.39□□□□□ -1.23
VIM-202ENST00000421459 SYDE1Q6ZW31 735 aaPredicted RBP7.39□□□□□ -1.23
VIM-202ENST00000421459 CAMKMTQ7Z624 323 aa7.39□□□□□ -1.23
VIM-202ENST00000421459 PRIMA1Q86XR5 153 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms