RNA–Protein interactions for RNA: ENST00000414879.5

PTPRF-205, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,836 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-205ENST00000414879 L3MBTL4Q8NA19 623 aa11.39□□□□□ -0.59
PTPRF-205ENST00000414879 ZNF480Q8WV37 535 aa11.39□□□□□ -0.59
PTPRF-205ENST00000414879 SGTBQ96EQ0 304 aa11.39□□□□□ -0.59
PTPRF-205ENST00000414879 TOR3AQ9H497 397 aa11.39□□□□□ -0.59
PTPRF-205ENST00000414879 TMEM138Q9NPI0 162 aa11.39□□□□□ -0.59
PTPRF-205ENST00000414879 RBM7Q9Y580 266 aaKnown RBP11.39□□□□□ -0.59
PTPRF-205ENST00000414879 GLOD5A6NK44 160 aa11.39□□□□□ -0.59
PTPRF-205ENST00000414879 PSIP1O75475 530 aaKnown RBP11.39□□□□□ -0.59
PTPRF-205ENST00000414879 CTSCP53634 463 aa11.39□□□□□ -0.59
PTPRF-205ENST00000414879 CTBSQ01459 385 aa11.39□□□□□ -0.59
PTPRF-205ENST00000414879 CEACAM7Q14002 265 aa11.39□□□□□ -0.59
PTPRF-205ENST00000414879 CHRDL2Q6WN34 429 aa11.39□□□□□ -0.59
PTPRF-205ENST00000414879 ZNF367Q7RTV3 350 aa11.39□□□□□ -0.59
PTPRF-205ENST00000414879 MFSD9Q8NBP5 474 aa11.39□□□□□ -0.59
PTPRF-205ENST00000414879 KAT2AQ92830 837 aa11.39□□□□□ -0.59
PTPRF-205ENST00000414879 NEIL2Q969S2 332 aa11.39□□□□□ -0.59
PTPRF-205ENST00000414879 ARRDC3Q96B67 414 aa11.39□□□□□ -0.59
PTPRF-205ENST00000414879 ZNF578Q96N58 590 aaPredicted RBP11.39□□□□□ -0.59
PTPRF-205ENST00000414879 FAM129BQ96TA1 746 aa11.39□□□□□ -0.59
PTPRF-205ENST00000414879 CTPS2Q9NRF8 586 aa11.39□□□□□ -0.59
PTPRF-205ENST00000414879 ACTL7AQ9Y615 435 aa11.39□□□□□ -0.59
PTPRF-205ENST00000414879 SLC22A31A6NKX4 558 aa11.39□□□□□ -0.59
PTPRF-205ENST00000414879 HCRTR2O43614 444 aa11.39□□□□□ -0.59
PTPRF-205ENST00000414879 ZNF432O94892 652 aa11.39□□□□□ -0.59
PTPRF-205ENST00000414879 ACSL1P33121 698 aa11.39□□□□□ -0.59
PTPRF-205ENST00000414879 CD47Q08722 323 aa11.39□□□□□ -0.59
PTPRF-205ENST00000414879 LIMS2Q7Z4I7 341 aa11.39□□□□□ -0.59
PTPRF-205ENST00000414879 FAR1Q8WVX9 515 aa11.39□□□□□ -0.59
PTPRF-205ENST00000414879 DNAJA4Q8WW22 397 aaPredicted RBP11.39□□□□□ -0.59
PTPRF-205ENST00000414879 SMPDL3BQ92485 455 aa11.39□□□□□ -0.59
PTPRF-205ENST00000414879 SCGB3A2Q96PL1 93 aa11.39□□□□□ -0.59
PTPRF-205ENST00000414879 IL4I1Q96RQ9 567 aa11.39□□□□□ -0.59
PTPRF-205ENST00000414879 PINK1Q9BXM7 581 aa11.39□□□□□ -0.59
PTPRF-205ENST00000414879 PCDHB14Q9Y5E9 798 aa11.39□□□□□ -0.59
PTPRF-205ENST00000414879 FEZF1A0PJY2 475 aa11.38□□□□□ -0.59
PTPRF-205ENST00000414879 TRAPPC13A5PLN9 417 aa11.38□□□□□ -0.59
PTPRF-205ENST00000414879 H3BUI4 141 aa11.38□□□□□ -0.59
PTPRF-205ENST00000414879 ANKRD28O15084 1053 aa11.38□□□□□ -0.59
PTPRF-205ENST00000414879 PNMTP11086 282 aa11.38□□□□□ -0.59
PTPRF-205ENST00000414879 UBL4AP11441 157 aa11.38□□□□□ -0.59
PTPRF-205ENST00000414879 ACPPP15309 386 aa11.38□□□□□ -0.59
PTPRF-205ENST00000414879 CTHP32929 405 aa11.38□□□□□ -0.59
PTPRF-205ENST00000414879 HTR6P50406 440 aa11.38□□□□□ -0.59
PTPRF-205ENST00000414879 ZNF84P51523 738 aa11.38□□□□□ -0.59
PTPRF-205ENST00000414879 PMS2P3Q13401 168 aa11.38□□□□□ -0.59
PTPRF-205ENST00000414879 MBTPS1Q14703 1052 aa11.38□□□□□ -0.59
PTPRF-205ENST00000414879 RGNQ15493 299 aa11.38□□□□□ -0.59
PTPRF-205ENST00000414879 RPE65Q16518 533 aa11.38□□□□□ -0.59
PTPRF-205ENST00000414879 TMEM173Q86WV6 379 aaPredicted RBP11.38□□□□□ -0.59
PTPRF-205ENST00000414879 RASGEF1AQ8N9B8 481 aa11.38□□□□□ -0.59
PTPRF-205ENST00000414879 TRUB1Q8WWH5 349 aaKnown RBP11.38□□□□□ -0.59
PTPRF-205ENST00000414879 SLC7A6OSQ96CW6 309 aaPredicted RBP11.38□□□□□ -0.59
PTPRF-205ENST00000414879 APIPQ96GX9 242 aa11.38□□□□□ -0.59
PTPRF-205ENST00000414879 CLCC1Q96S66 551 aa11.38□□□□□ -0.59
PTPRF-205ENST00000414879 TBC1D17Q9HA65 648 aa11.38□□□□□ -0.59
PTPRF-205ENST00000414879 PRDM4Q9UKN5 801 aa11.38□□□□□ -0.59
PTPRF-205ENST00000414879 A0A1B0GTW7 788 aa11.38□□□□□ -0.59
PTPRF-205ENST00000414879 ZNF860A6NHJ4 632 aa11.38□□□□□ -0.59
PTPRF-205ENST00000414879 BCAT2O15382 392 aaPredicted RBP11.38□□□□□ -0.59
PTPRF-205ENST00000414879 SLCO2B1O94956 709 aa11.38□□□□□ -0.59
PTPRF-205ENST00000414879 LAMP1P11279 417 aa11.38□□□□□ -0.59
PTPRF-205ENST00000414879 CD72P21854 359 aa11.38□□□□□ -0.59
PTPRF-205ENST00000414879 ALG1LQ6GMV1 187 aa11.38□□□□□ -0.59
PTPRF-205ENST00000414879 TMEM107Q6UX40 140 aa11.38□□□□□ -0.59
PTPRF-205ENST00000414879 ISLR2Q6UXK2 745 aa11.38□□□□□ -0.59
PTPRF-205ENST00000414879 IL22RA1Q8N6P7 574 aa11.38□□□□□ -0.59
PTPRF-205ENST00000414879 MTG2Q9H4K7 406 aa11.38□□□□□ -0.59
PTPRF-205ENST00000414879 RABL2AQ9UBK7 228 aaPredicted RBP11.38□□□□□ -0.59
PTPRF-205ENST00000414879 EMCNQ9ULC0 261 aa11.38□□□□□ -0.59
PTPRF-205ENST00000414879 RABL2BQ9UNT1 228 aa11.38□□□□□ -0.59
PTPRF-205ENST00000414879 PDLIM1O00151 329 aa11.38□□□□□ -0.59
PTPRF-205ENST00000414879 TLX2O43763 284 aaPredicted RBP11.38□□□□□ -0.59
PTPRF-205ENST00000414879 PRSS56P0CW18 603 aa11.38□□□□□ -0.59
PTPRF-205ENST00000414879 GPX3P22352 226 aa11.38□□□□□ -0.59
PTPRF-205ENST00000414879 DCKP27707 260 aa11.38□□□□□ -0.59
PTPRF-205ENST00000414879 GINS1Q14691 196 aa11.38□□□□□ -0.59
PTPRF-205ENST00000414879 LINC01599Q8WXQ3 324 aa11.38□□□□□ -0.59
PTPRF-205ENST00000414879 POLDIP3Q9BY77 421 aaKnown RBP11.38□□□□□ -0.59
PTPRF-205ENST00000414879 TPK1Q9H3S4 243 aa11.38□□□□□ -0.59
PTPRF-205ENST00000414879 GORASP2Q9H8Y8 452 aa11.38□□□□□ -0.59
PTPRF-205ENST00000414879 RNF121Q9H920 327 aa11.38□□□□□ -0.59
PTPRF-205ENST00000414879 NKIRAS2Q9NYR9 191 aa11.38□□□□□ -0.59
PTPRF-205ENST00000414879 SLC35A3Q9Y2D2 325 aa11.38□□□□□ -0.59
PTPRF-205ENST00000414879 GPR45Q9Y5Y3 372 aa11.38□□□□□ -0.59
PTPRF-205ENST00000414879 VSTM2BA6NLU5 285 aa11.38□□□□□ -0.59
PTPRF-205ENST00000414879 SNAPC5O75971 98 aa11.38□□□□□ -0.59
PTPRF-205ENST00000414879 SDC1P18827 310 aa11.38□□□□□ -0.59
PTPRF-205ENST00000414879 FMO3P31513 532 aa11.38□□□□□ -0.59
PTPRF-205ENST00000414879 CRISP1P54107 249 aa11.38□□□□□ -0.59
PTPRF-205ENST00000414879 E2F2Q14209 437 aa11.38□□□□□ -0.59
PTPRF-205ENST00000414879 SHHQ15465 462 aa11.38□□□□□ -0.59
PTPRF-205ENST00000414879 NSDHLQ15738 373 aa11.38□□□□□ -0.59
PTPRF-205ENST00000414879 CLEC12AQ5QGZ9 265 aa11.38□□□□□ -0.59
PTPRF-205ENST00000414879 GARNL3Q5VVW2 1013 aa11.38□□□□□ -0.59
PTPRF-205ENST00000414879 ASRGL1Q7L266 308 aa11.38□□□□□ -0.59
PTPRF-205ENST00000414879 MCATQ8IVS2 390 aaKnown RBP11.38□□□□□ -0.59
PTPRF-205ENST00000414879 MARVELD2Q8N4S9 558 aa11.38□□□□□ -0.59
PTPRF-205ENST00000414879 MEIOBQ8N635 442 aa11.38□□□□□ -0.59
PTPRF-205ENST00000414879 ORAI3Q9BRQ5 295 aa11.38□□□□□ -0.59
PTPRF-205ENST00000414879 GIN1Q9NXP7 522 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms