RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 IFNGP01579 166 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 CHRM1P11229 460 aaPredicted RBP6.97□□□□□ -1.29
SCN9A-202ENST00000409435 IL7P13232 177 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 ZNF823P16415 610 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 PORP16435 677 aaPredicted RBP6.97□□□□□ -1.29
SCN9A-202ENST00000409435 RAB3BP20337 219 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 IL4RP24394 825 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 CYB561P49447 251 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 ZNF84P51523 738 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 GTF2H2Q13888 395 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 PTCHD3Q3KNS1 767 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 ADNP2Q6IQ32 1131 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 GTF2H2CQ6P1K8 395 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 ZNF529Q6P280 563 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 FAM199XQ6PEV8 388 aaPredicted RBP6.97□□□□□ -1.29
SCN9A-202ENST00000409435 KYAT3Q6YP21 454 aaKnown RBP6.97□□□□□ -1.29
SCN9A-202ENST00000409435 ZNF767PQ75MW2 155 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 THOC6Q86W42 341 aaKnown RBP6.97□□□□□ -1.29
SCN9A-202ENST00000409435 SPATA6LQ8N4H0 392 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 CCDC54Q8NEL0 328 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 OR4K14Q8NGD5 310 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 ZC3HAV1LQ96H79 300 aaKnown RBP6.97□□□□□ -1.29
SCN9A-202ENST00000409435 PWWP2AQ96N64 755 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 SCGB3A2Q96PL1 93 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 RPP25Q9BUL9 199 aaKnown RBP6.97□□□□□ -1.29
SCN9A-202ENST00000409435 TAS2R9Q9NYW1 312 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 FTCDNL1E5RQL4 147 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 GLSO94925 669 aaPredicted RBP6.97□□□□□ -1.29
SCN9A-202ENST00000409435 SLC16A8O95907 504 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 PENKP01210 267 aaPredicted RBP6.97□□□□□ -1.29
SCN9A-202ENST00000409435 IFNA21P01568 189 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 SBK2P0C263 348 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 NELFEP18615 380 aaKnown RBP6.97□□□□□ -1.29
SCN9A-202ENST00000409435 PROZP22891 400 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 SERPINF1P36955 418 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 ZNF829Q3KNS6 432 aaPredicted RBP6.97□□□□□ -1.29
SCN9A-202ENST00000409435 DEFB134Q4QY38 66 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 GALNTL5Q7Z4T8 443 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 TDRPQ86YL5 185 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 OR5T3Q8NGG3 340 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 C15orf40Q8WUR7 153 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 SARAFQ96BY9 339 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 DTD2Q96FN9 168 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 PANX1Q96RD7 426 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 TMEM246Q9BRR3 403 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 IPPKQ9H8X2 491 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 PCDHGA8Q9Y5G5 932 aa6.97□□□□□ -1.29
SCN9A-202ENST00000409435 ZNF705GA8MUZ8 300 aaPredicted RBP6.96□□□□□ -1.29
SCN9A-202ENST00000409435 TGFB1P01137 390 aa6.96□□□□□ -1.29
SCN9A-202ENST00000409435 GCH1P30793 250 aa6.96□□□□□ -1.29
SCN9A-202ENST00000409435 PRKCIP41743 596 aa6.96□□□□□ -1.29
SCN9A-202ENST00000409435 MAGEA3P43357 314 aa6.96□□□□□ -1.29
SCN9A-202ENST00000409435 SLC15A1P46059 708 aa6.96□□□□□ -1.29
SCN9A-202ENST00000409435 KIAA1024LP59773 190 aa6.96□□□□□ -1.29
SCN9A-202ENST00000409435 TSPAN5P62079 268 aa6.96□□□□□ -1.29
SCN9A-202ENST00000409435 NCS1P62166 190 aa6.96□□□□□ -1.29
SCN9A-202ENST00000409435 ID2Q02363 134 aa6.96□□□□□ -1.29
SCN9A-202ENST00000409435 ZNF549Q6P9A3 640 aa6.96□□□□□ -1.29
SCN9A-202ENST00000409435 KDELC1Q6UW63 502 aa6.96□□□□□ -1.29
SCN9A-202ENST00000409435 TMIGD1Q6UXZ0 262 aa6.96□□□□□ -1.29
SCN9A-202ENST00000409435 OR2I1PQ8NGU4 316 aa6.96□□□□□ -1.29
SCN9A-202ENST00000409435 SLC35G5Q96KT7 338 aa6.96□□□□□ -1.29
SCN9A-202ENST00000409435 NODALQ96S42 347 aa6.96□□□□□ -1.29
SCN9A-202ENST00000409435 FGFBP2Q9BYJ0 223 aa6.96□□□□□ -1.29
SCN9A-202ENST00000409435 KLF13Q9Y2Y9 288 aaPredicted RBP6.96□□□□□ -1.29
SCN9A-202ENST00000409435 SAMHD1Q9Y3Z3 626 aaKnown RBP6.96□□□□□ -1.29
SCN9A-202ENST00000409435 BHMG1C9JSJ3 638 aaPredicted RBP6.96□□□□□ -1.3
SCN9A-202ENST00000409435 FBP2O00757 339 aa6.96□□□□□ -1.3
SCN9A-202ENST00000409435 TNFRSF10CO14798 259 aa6.96□□□□□ -1.3
SCN9A-202ENST00000409435 YY2O15391 372 aa6.96□□□□□ -1.3
SCN9A-202ENST00000409435 TXNL1O43396 289 aa6.96□□□□□ -1.3
SCN9A-202ENST00000409435 GMDSO60547 372 aa6.96□□□□□ -1.3
SCN9A-202ENST00000409435 MTHFD1P11586 935 aaKnown RBP6.96□□□□□ -1.3
SCN9A-202ENST00000409435 IL7RP16871 459 aa6.96□□□□□ -1.3
SCN9A-202ENST00000409435 MATN1P21941 496 aa6.96□□□□□ -1.3
SCN9A-202ENST00000409435 HTR2BP41595 481 aa6.96□□□□□ -1.3
SCN9A-202ENST00000409435 METTL21CQ5VZV1 264 aa6.96□□□□□ -1.3
SCN9A-202ENST00000409435 GPR139Q6DWJ6 353 aa6.96□□□□□ -1.3
SCN9A-202ENST00000409435 COMMD7Q86VX2 200 aa6.96□□□□□ -1.3
SCN9A-202ENST00000409435 NRROSQ86YC3 692 aa6.96□□□□□ -1.3
SCN9A-202ENST00000409435 GPR137CQ8N3F9 429 aa6.96□□□□□ -1.3
SCN9A-202ENST00000409435 CDKN2AIPNLQ96HQ2 116 aa6.96□□□□□ -1.3
SCN9A-202ENST00000409435 CAMK1GQ96NX5 476 aa6.96□□□□□ -1.3
SCN9A-202ENST00000409435 PPA2Q9H2U2 334 aa6.96□□□□□ -1.3
SCN9A-202ENST00000409435 SMURF2Q9HAU4 748 aa6.96□□□□□ -1.3
SCN9A-202ENST00000409435 LUZP4Q9P127 313 aa6.96□□□□□ -1.3
SCN9A-202ENST00000409435 UTS2RQ9UKP6 389 aa6.96□□□□□ -1.3
SCN9A-202ENST00000409435 ABCA3Q99758 1704 aa6.96□□□□□ -1.3
SCN9A-202ENST00000409435 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP6.96□□□□□ -1.3
SCN9A-202ENST00000409435 LIASO43766 372 aa6.96□□□□□ -1.3
SCN9A-202ENST00000409435 MPZL2O60487 215 aa6.96□□□□□ -1.3
SCN9A-202ENST00000409435 GRIA1P42261 906 aa6.96□□□□□ -1.3
SCN9A-202ENST00000409435 RPL14P50914 215 aaKnown RBP6.96□□□□□ -1.3
SCN9A-202ENST00000409435 ERVK-8P63133 956 aa6.96□□□□□ -1.3
SCN9A-202ENST00000409435 IFI35P80217 286 aaPredicted RBP6.96□□□□□ -1.3
SCN9A-202ENST00000409435 BNIP3Q12983 259 aa6.96□□□□□ -1.3
SCN9A-202ENST00000409435 MOGQ16653 247 aa6.96□□□□□ -1.3
SCN9A-202ENST00000409435 HSDL2Q6YN16 418 aa6.96□□□□□ -1.3
SCN9A-202ENST00000409435 HSPBAP1Q96EW2 488 aa6.96□□□□□ -1.3
SCN9A-202ENST00000409435 AMDHD1Q96NU7 426 aa6.96□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms