RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 RBBP5Q15291 538 aaKnown RBP9.63□□□□□ -0.87
NEDD8-202ENST00000396828 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.63□□□□□ -0.871e-17■■□□□ 12.3
NEDD8-202ENST00000396828 LSM12Q3MHD2 195 aaKnown RBP9.63□□□□□ -0.87
NEDD8-202ENST00000396828 ATP6AP1LQ52LC2 224 aa9.63□□□□□ -0.87
NEDD8-202ENST00000396828 KRTCAP3Q53RY4 240 aa9.63□□□□□ -0.87
NEDD8-202ENST00000396828 TCHHL1Q5QJ38 904 aaPredicted RBP9.63□□□□□ -0.87
NEDD8-202ENST00000396828 XKRXQ6PP77 449 aa9.63□□□□□ -0.87
NEDD8-202ENST00000396828 RPTNQ6XPR3 784 aa9.63□□□□□ -0.87
NEDD8-202ENST00000396828 TRIM46Q7Z4K8 759 aa9.63□□□□□ -0.87
NEDD8-202ENST00000396828 GDF7Q7Z4P5 450 aa9.63□□□□□ -0.87
NEDD8-202ENST00000396828 DOLPP1Q86YN1 238 aa9.63□□□□□ -0.87
NEDD8-202ENST00000396828 LAS2Q8IYD9 372 aa9.63□□□□□ -0.87
NEDD8-202ENST00000396828 TTLQ8NG68 377 aa9.63□□□□□ -0.87
NEDD8-202ENST00000396828 OR7G3Q8NG95 312 aa9.63□□□□□ -0.87
NEDD8-202ENST00000396828 NT5CQ8TCD5 201 aa9.63□□□□□ -0.87
NEDD8-202ENST00000396828 TUBGCP3Q96CW5 907 aa9.63□□□□□ -0.87
NEDD8-202ENST00000396828 MTFMTQ96DP5 389 aaKnown RBP9.63□□□□□ -0.87
NEDD8-202ENST00000396828 SMIM10Q96HG1 83 aa9.63□□□□□ -0.87
NEDD8-202ENST00000396828 MAELQ96JY0 434 aaKnown RBP9.63□□□□□ -0.87
NEDD8-202ENST00000396828 PPP3R2Q96LZ3 170 aa9.63□□□□□ -0.87
NEDD8-202ENST00000396828 PTCHD1Q96NR3 888 aa9.63□□□□□ -0.87
NEDD8-202ENST00000396828 LRRC37BQ96QE4 947 aa9.63□□□□□ -0.87
NEDD8-202ENST00000396828 OR1F2PQ96R84 312 aa9.63□□□□□ -0.87
NEDD8-202ENST00000396828 TUBB1Q9H4B7 451 aa9.63□□□□□ -0.87
NEDD8-202ENST00000396828 WDR55Q9H6Y2 383 aaPredicted RBP9.63□□□□□ -0.87
NEDD8-202ENST00000396828 BRF2Q9HAW0 419 aa9.63□□□□□ -0.87
NEDD8-202ENST00000396828 CHST11Q9NPF2 352 aa9.63□□□□□ -0.87
NEDD8-202ENST00000396828 MRGBPQ9NV56 204 aa9.63□□□□□ -0.87
NEDD8-202ENST00000396828 HEY2Q9UBP5 337 aa9.63□□□□□ -0.87
NEDD8-202ENST00000396828 TSC22D4Q9Y3Q8 395 aa9.63□□□□□ -0.87
NEDD8-202ENST00000396828 CLDN16Q9Y5I7 305 aa9.63□□□□□ -0.87
NEDD8-202ENST00000396828 IGKV3D-11A0A0A0MRZ8 115 aa9.62□□□□□ -0.87
NEDD8-202ENST00000396828 A0A0G2JN53 185 aa9.62□□□□□ -0.87
NEDD8-202ENST00000396828 ATP6AP2A0A1C7CYW4 349 aa9.62□□□□□ -0.87
NEDD8-202ENST00000396828 SERTM1A2A2V5 107 aa9.62□□□□□ -0.87
NEDD8-202ENST00000396828 TGFBR3LH3BV60 316 aa9.62□□□□□ -0.87
NEDD8-202ENST00000396828 FOXE1O00358 373 aaPredicted RBP9.62□□□□□ -0.87
NEDD8-202ENST00000396828 EBAG9O00559 213 aa9.62□□□□□ -0.87
NEDD8-202ENST00000396828 NME2P1O60361 137 aa9.62□□□□□ -0.87
NEDD8-202ENST00000396828 PRMT3O60678 531 aa9.62□□□□□ -0.87
NEDD8-202ENST00000396828 SLC25A12O75746 678 aa9.62□□□□□ -0.87
NEDD8-202ENST00000396828 ATP6AP2O75787 350 aa9.62□□□□□ -0.87
NEDD8-202ENST00000396828 LBPP18428 481 aa9.62□□□□□ -0.87
NEDD8-202ENST00000396828 NCF2P19878 526 aaPredicted RBP9.62□□□□□ -0.87
NEDD8-202ENST00000396828 NME2P22392 152 aa9.62□□□□□ -0.87
NEDD8-202ENST00000396828 PPP2R1BP30154 601 aa9.62□□□□□ -0.87
NEDD8-202ENST00000396828 PTGER4P35408 488 aa9.62□□□□□ -0.87
NEDD8-202ENST00000396828 HTR6P50406 440 aa9.62□□□□□ -0.87
NEDD8-202ENST00000396828 NEK2P51955 445 aa9.62□□□□□ -0.87
NEDD8-202ENST00000396828 HNRNPFP52597 415 aaKnown RBP9.62□□□□□ -0.87
NEDD8-202ENST00000396828 MLF1P58340 268 aa9.62□□□□□ -0.87
NEDD8-202ENST00000396828 IRX1P78414 480 aaPredicted RBP9.62□□□□□ -0.87
NEDD8-202ENST00000396828 REEP5Q00765 189 aa9.62□□□□□ -0.87
NEDD8-202ENST00000396828 MAD2L1Q13257 205 aaPredicted RBP9.62□□□□□ -0.87
NEDD8-202ENST00000396828 PWP1Q13610 501 aa9.62□□□□□ -0.87
NEDD8-202ENST00000396828 DDX39BQ13838 428 aaKnown RBP9.62□□□□□ -0.87
NEDD8-202ENST00000396828 XKR7Q5GH72 579 aa9.62□□□□□ -0.87
NEDD8-202ENST00000396828 SPDYAQ5MJ70 313 aa9.62□□□□□ -0.87
NEDD8-202ENST00000396828 MTFR2Q6P444 385 aa9.62□□□□□ -0.87
NEDD8-202ENST00000396828 SCIMPQ6UWF3 145 aa9.62□□□□□ -0.87
NEDD8-202ENST00000396828 C16orf47Q6ZP98 133 aaPredicted RBP9.62□□□□□ -0.87
NEDD8-202ENST00000396828 SLC5A8Q8N695 610 aa9.62□□□□□ -0.87
NEDD8-202ENST00000396828 TMEM52Q8NDY8 209 aa9.62□□□□□ -0.87
NEDD8-202ENST00000396828 WDR20Q8TBZ3 569 aa9.62□□□□□ -0.87
NEDD8-202ENST00000396828 MAGED4Q96JG8 741 aa9.62□□□□□ -0.87
NEDD8-202ENST00000396828 C3orf30Q96M34 536 aa9.62□□□□□ -0.87
NEDD8-202ENST00000396828 OR52B2Q96RD2 323 aa9.62□□□□□ -0.87
NEDD8-202ENST00000396828 MTERF1Q99551 399 aaKnown RBP9.62□□□□□ -0.87
NEDD8-202ENST00000396828 SLC6A16Q9GZN6 736 aa9.62□□□□□ -0.87
NEDD8-202ENST00000396828 RHBGQ9H310 441 aa9.62□□□□□ -0.87
NEDD8-202ENST00000396828 AKTIPQ9H8T0 292 aa9.62□□□□□ -0.87
NEDD8-202ENST00000396828 FARSBQ9NSD9 589 aaKnown RBP9.62□□□□□ -0.87
NEDD8-202ENST00000396828 ZFP69BQ9UJL9 534 aa9.62□□□□□ -0.87
NEDD8-202ENST00000396828 ZNF223Q9UK11 482 aaPredicted RBP9.62□□□□□ -0.87
NEDD8-202ENST00000396828 PTGDR2Q9Y5Y4 395 aa9.62□□□□□ -0.87
NEDD8-202ENST00000396828 HRNRQ86YZ3 2850 aaPredicted RBP9.61□□□□□ -0.87
NEDD8-202ENST00000396828 TCRBV16S1A1N1A0A5B0 115 aa9.61□□□□□ -0.87
NEDD8-202ENST00000396828 SAGE2PA6NJ88 616 aa9.61□□□□□ -0.87
NEDD8-202ENST00000396828 E9PBE3 544 aa9.61□□□□□ -0.87
NEDD8-202ENST00000396828 UBDO15205 165 aa9.61□□□□□ -0.87
NEDD8-202ENST00000396828 PRKNO60260 465 aaPredicted RBP9.61□□□□□ -0.87
NEDD8-202ENST00000396828 PEX11AO75192 247 aa9.61□□□□□ -0.87
NEDD8-202ENST00000396828 SEC22BO75396 215 aa9.61□□□□□ -0.87
NEDD8-202ENST00000396828 RSL1D1O76021 490 aaKnown RBP9.61□□□□□ -0.87
NEDD8-202ENST00000396828 CLDN14O95500 239 aa9.61□□□□□ -0.87
NEDD8-202ENST00000396828 TBX6O95947 436 aaPredicted RBP9.61□□□□□ -0.87
NEDD8-202ENST00000396828 SERPINA6P08185 405 aa9.61□□□□□ -0.87
NEDD8-202ENST00000396828 AGAP20933 346 aa9.61□□□□□ -0.87
NEDD8-202ENST00000396828 IL10P22301 178 aa9.61□□□□□ -0.87
NEDD8-202ENST00000396828 PTX3P26022 381 aaPredicted RBP9.61□□□□□ -0.87
NEDD8-202ENST00000396828 AHRP35869 848 aa9.61□□□□□ -0.87
NEDD8-202ENST00000396828 CYB561P49447 251 aa9.61□□□□□ -0.87
NEDD8-202ENST00000396828 CASP6P55212 293 aa9.61□□□□□ -0.87
NEDD8-202ENST00000396828 RUNX2Q13950 521 aa9.61□□□□□ -0.87
NEDD8-202ENST00000396828 SMU1Q2TAY7 513 aa9.61□□□□□ -0.87
NEDD8-202ENST00000396828 GALNTL6Q49A17 601 aa9.61□□□□□ -0.87
NEDD8-202ENST00000396828 QSOX2Q6ZRP7 698 aa9.61□□□□□ -0.87
NEDD8-202ENST00000396828 LARP4Q71RC2 724 aaKnown RBP eCLIP9.61□□□□□ -0.872e-13■■■■■ 29.6
NEDD8-202ENST00000396828 MDGA2Q7Z553 956 aa9.61□□□□□ -0.87
NEDD8-202ENST00000396828 SPATA19Q7Z5L4 167 aa9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms