RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 NAALAD2Q9Y3Q0 740 aa17.16■□□□□ 0.34
CCDC88C-203ENST00000389856 ORC6Q9Y5N6 252 aa17.16■□□□□ 0.34
CCDC88C-203ENST00000389856 NCOR1O75376 2440 aa17.15■□□□□ 0.34
CCDC88C-203ENST00000389856 SLITRK5O94991 958 aa17.15■□□□□ 0.34
CCDC88C-203ENST00000389856 AVPR1BP47901 424 aa17.15■□□□□ 0.34
CCDC88C-203ENST00000389856 PRR5P85299 388 aa17.15■□□□□ 0.34
CCDC88C-203ENST00000389856 SQSTM1Q13501 440 aa17.15■□□□□ 0.34
CCDC88C-203ENST00000389856 CEBPEQ15744 281 aa17.15■□□□□ 0.34
CCDC88C-203ENST00000389856 NKG7Q16617 165 aa17.15■□□□□ 0.34
CCDC88C-203ENST00000389856 CLPPQ16740 277 aaPredicted RBP17.15■□□□□ 0.34
CCDC88C-203ENST00000389856 ZNF630Q2M218 657 aaPredicted RBP17.15■□□□□ 0.34
CCDC88C-203ENST00000389856 DEFB110Q30KQ9 67 aa17.15■□□□□ 0.34
CCDC88C-203ENST00000389856 DDX59Q5T1V6 619 aaKnown RBP eCLIP17.15■□□□□ 0.34
CCDC88C-203ENST00000389856 NKAIN2Q5VXU1 208 aa17.15■□□□□ 0.34
CCDC88C-203ENST00000389856 C18orf63Q68DL7 685 aa17.15■□□□□ 0.34
CCDC88C-203ENST00000389856 ISLR2Q6UXK2 745 aa17.15■□□□□ 0.34
CCDC88C-203ENST00000389856 GATAD2AQ86YP4 633 aa17.15■□□□□ 0.34
CCDC88C-203ENST00000389856 C8orf59Q8N0T1 100 aaPredicted RBP17.15■□□□□ 0.34
CCDC88C-203ENST00000389856 OR56A1Q8NGH5 318 aa17.15■□□□□ 0.34
CCDC88C-203ENST00000389856 NETO1Q8TDF5 533 aa17.15■□□□□ 0.34
CCDC88C-203ENST00000389856 HDAC2Q92769 488 aaKnown RBP17.15■□□□□ 0.34
CCDC88C-203ENST00000389856 TANKQ92844 425 aa17.15■□□□□ 0.34
CCDC88C-203ENST00000389856 NRBF2Q96F24 287 aa17.15■□□□□ 0.34
CCDC88C-203ENST00000389856 TMEM38AQ9H6F2 299 aa17.15■□□□□ 0.34
CCDC88C-203ENST00000389856 CXorf36Q9H7Y0 433 aa17.15■□□□□ 0.34
CCDC88C-203ENST00000389856 FANCEQ9HB96 536 aa17.15■□□□□ 0.34
CCDC88C-203ENST00000389856 C3orf14Q9HBI5 128 aa17.15■□□□□ 0.34
CCDC88C-203ENST00000389856 KCMF1Q9P0J7 381 aa17.15■□□□□ 0.34
CCDC88C-203ENST00000389856 SEMA5BQ9P283 1151 aa17.15■□□□□ 0.34
CCDC88C-203ENST00000389856 C5AR2Q9P296 337 aa17.15■□□□□ 0.34
CCDC88C-203ENST00000389856 CES1P1Q9UKY3 287 aa17.15■□□□□ 0.34
CCDC88C-203ENST00000389856 BLOC1S6Q9UL45 172 aa17.15■□□□□ 0.34
CCDC88C-203ENST00000389856 PCDHGA5Q9Y5G8 931 aa17.15■□□□□ 0.34
CCDC88C-203ENST00000389856 IGHV5-51A0A0C4DH38 117 aa17.14■□□□□ 0.33
CCDC88C-203ENST00000389856 GLOD5A6NK44 160 aa17.14■□□□□ 0.33
CCDC88C-203ENST00000389856 H3BSA7 217 aa17.14■□□□□ 0.33
CCDC88C-203ENST00000389856 B4GAT1O43505 415 aa17.14■□□□□ 0.33
CCDC88C-203ENST00000389856 PCDHGA12O60330 932 aa17.14■□□□□ 0.33
CCDC88C-203ENST00000389856 TRMUO75648 421 aaKnown RBP17.14■□□□□ 0.33
CCDC88C-203ENST00000389856 IFNA14P01570 189 aa17.14■□□□□ 0.33
CCDC88C-203ENST00000389856 ETS2P15036 469 aa17.14■□□□□ 0.33
CCDC88C-203ENST00000389856 NELFEP18615 380 aaKnown RBP17.14■□□□□ 0.33
CCDC88C-203ENST00000389856 CCT3P49368 545 aaKnown RBP17.14■□□□□ 0.33
CCDC88C-203ENST00000389856 NUBP1P53384 320 aa17.14■□□□□ 0.33
CCDC88C-203ENST00000389856 RAB38P57729 211 aa17.14■□□□□ 0.33
CCDC88C-203ENST00000389856 RUNX2Q13950 521 aa17.14■□□□□ 0.33
CCDC88C-203ENST00000389856 PRSS53Q2L4Q9 553 aa17.14■□□□□ 0.33
CCDC88C-203ENST00000389856 FAM214AQ32MH5 1076 aa17.14■□□□□ 0.33
CCDC88C-203ENST00000389856 SAXO2Q658L1 398 aa17.14■□□□□ 0.33
CCDC88C-203ENST00000389856 ZNF551Q7Z340 670 aaPredicted RBP17.14■□□□□ 0.33
CCDC88C-203ENST00000389856 FAM86B1Q8N7N1 296 aa17.14■□□□□ 0.33
CCDC88C-203ENST00000389856 CHST8Q9H2A9 424 aa17.14■□□□□ 0.33
CCDC88C-203ENST00000389856 GLIPR2Q9H4G4 154 aa17.14■□□□□ 0.33
CCDC88C-203ENST00000389856 SLAMF7Q9NQ25 335 aa17.14■□□□□ 0.33
CCDC88C-203ENST00000389856 KLHL3Q9UH77 587 aa17.14■□□□□ 0.33
CCDC88C-203ENST00000389856 ERVK-11Q9UQG0 969 aa17.14■□□□□ 0.33
CCDC88C-203ENST00000389856 ZDBF2Q9HCK1 2354 aa17.14■□□□□ 0.33
CCDC88C-203ENST00000389856 HYKKA2RU49 373 aa17.14■□□□□ 0.33
CCDC88C-203ENST00000389856 PGRMC2O15173 223 aa17.14■□□□□ 0.33
CCDC88C-203ENST00000389856 JUNBP17275 347 aaPredicted RBP17.14■□□□□ 0.33
CCDC88C-203ENST00000389856 CD1CP29017 333 aa17.14■□□□□ 0.33
CCDC88C-203ENST00000389856 DCTP40126 519 aa17.14■□□□□ 0.33
CCDC88C-203ENST00000389856 ARHGDIAP52565 204 aa17.14■□□□□ 0.33
CCDC88C-203ENST00000389856 GABARAPL2P60520 117 aa17.14■□□□□ 0.33
CCDC88C-203ENST00000389856 SLC14A1Q13336 389 aa17.14■□□□□ 0.33
CCDC88C-203ENST00000389856 ELOAQ14241 798 aaKnown RBP17.14■□□□□ 0.33
CCDC88C-203ENST00000389856 SHQ1Q6PI26 577 aaKnown RBP17.14■□□□□ 0.33
CCDC88C-203ENST00000389856 ZNF773Q6PK81 442 aa17.14■□□□□ 0.33
CCDC88C-203ENST00000389856 RNF130Q86XS8 419 aa17.14■□□□□ 0.33
CCDC88C-203ENST00000389856 LRRC25Q8N386 305 aaPredicted RBP17.14■□□□□ 0.33
CCDC88C-203ENST00000389856 ASPSCR1Q9BZE9 553 aa17.14■□□□□ 0.33
CCDC88C-203ENST00000389856 ING2Q9H160 280 aa17.14■□□□□ 0.33
CCDC88C-203ENST00000389856 ENAMQ9NRM1 1142 aa17.14■□□□□ 0.33
CCDC88C-203ENST00000389856 FAM118AQ9NWS6 357 aa17.14■□□□□ 0.33
CCDC88C-203ENST00000389856 TMEM9Q9P0T7 183 aa17.14■□□□□ 0.33
CCDC88C-203ENST00000389856 GMEB2Q9UKD1 530 aa17.14■□□□□ 0.33
CCDC88C-203ENST00000389856 ANGPT4Q9Y264 503 aa17.14■□□□□ 0.33
CCDC88C-203ENST00000389856 ZNF451Q9Y4E5 1061 aa17.14■□□□□ 0.33
CCDC88C-203ENST00000389856 MAP4K5Q9Y4K4 846 aa17.14■□□□□ 0.33
CCDC88C-203ENST00000389856 CPED1A4D0V7 1026 aa17.13■□□□□ 0.33
CCDC88C-203ENST00000389856 FITM1A5D6W6 292 aa17.13■□□□□ 0.33
CCDC88C-203ENST00000389856 SIGLEC6O43699 453 aa17.13■□□□□ 0.33
CCDC88C-203ENST00000389856 E2F6O75461 281 aa17.13■□□□□ 0.33
CCDC88C-203ENST00000389856 NSA2O95478 260 aaKnown RBP17.13■□□□□ 0.33
CCDC88C-203ENST00000389856 FHP07954 510 aa17.13■□□□□ 0.33
CCDC88C-203ENST00000389856 MSL3P1P0C860 447 aa17.13■□□□□ 0.33
CCDC88C-203ENST00000389856 RNH1P13489 461 aaKnown RBP17.13■□□□□ 0.33
CCDC88C-203ENST00000389856 GABRA4P48169 554 aa17.13■□□□□ 0.33
CCDC88C-203ENST00000389856 DSTNP60981 165 aa17.13■□□□□ 0.33
CCDC88C-203ENST00000389856 GNA13Q14344 377 aa17.13■□□□□ 0.33
CCDC88C-203ENST00000389856 YOD1Q5VVQ6 348 aaPredicted RBP17.13■□□□□ 0.33
CCDC88C-203ENST00000389856 TMEM71Q6P5X7 295 aa17.13■□□□□ 0.33
CCDC88C-203ENST00000389856 EIF3MQ7L2H7 374 aaKnown RBP17.13■□□□□ 0.33
CCDC88C-203ENST00000389856 PIWIL3Q7Z3Z3 882 aaKnown RBP17.13■□□□□ 0.33
CCDC88C-203ENST00000389856 C6orf120Q7Z4R8 191 aa17.13■□□□□ 0.33
CCDC88C-203ENST00000389856 CA13Q8N1Q1 262 aa17.13■□□□□ 0.33
CCDC88C-203ENST00000389856 C7orf57Q8NEG2 295 aa17.13■□□□□ 0.33
CCDC88C-203ENST00000389856 OR5AK3PQ8NH89 298 aa17.13■□□□□ 0.33
CCDC88C-203ENST00000389856 SLC35G5Q96KT7 338 aa17.13■□□□□ 0.33
CCDC88C-203ENST00000389856 TOR3AQ9H497 397 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms