RNA–Protein interactions for RNA: ENST00000345009.8

SNCA-202, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 1,096 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-202ENST00000345009 GOLGA8NF8WBI6 632 aa11.04□□□□□ -0.64
SNCA-202ENST00000345009 TGFBR3LH3BV60 316 aa11.04□□□□□ -0.64
SNCA-202ENST00000345009 CDK2AP1O14519 115 aa11.04□□□□□ -0.64
SNCA-202ENST00000345009 TBX19O60806 448 aa11.04□□□□□ -0.64
SNCA-202ENST00000345009 EDF1O60869 148 aaKnown RBP11.04□□□□□ -0.64
SNCA-202ENST00000345009 BCAS2O75934 225 aaPredicted RBP11.04□□□□□ -0.64
SNCA-202ENST00000345009 DNAJB5O75953 348 aa11.04□□□□□ -0.64
SNCA-202ENST00000345009 ZFAND5O76080 213 aa11.04□□□□□ -0.64
SNCA-202ENST00000345009 SLITRK5O94991 958 aa11.04□□□□□ -0.64
SNCA-202ENST00000345009 LRATO95237 230 aa11.04□□□□□ -0.64
SNCA-202ENST00000345009 AVPP01185 164 aa11.04□□□□□ -0.64
SNCA-202ENST00000345009 FAM87AP0C7U9 286 aa11.04□□□□□ -0.64
SNCA-202ENST00000345009 G6PDP11413 515 aa11.04□□□□□ -0.64
SNCA-202ENST00000345009 IDO1P14902 403 aa11.04□□□□□ -0.64
SNCA-202ENST00000345009 TACR1P25103 407 aa11.04□□□□□ -0.64
SNCA-202ENST00000345009 CLNS1AP54105 237 aaKnown RBP11.04□□□□□ -0.64
SNCA-202ENST00000345009 AQP5P55064 265 aa11.04□□□□□ -0.64
SNCA-202ENST00000345009 CLDN8P56748 225 aa11.04□□□□□ -0.64
SNCA-202ENST00000345009 IRX1P78414 480 aaPredicted RBP11.04□□□□□ -0.64
SNCA-202ENST00000345009 ZNF267Q14586 743 aaPredicted RBP11.04□□□□□ -0.64
SNCA-202ENST00000345009 SPRED3Q2MJR0 410 aa11.04□□□□□ -0.64
SNCA-202ENST00000345009 CPTPQ5TA50 214 aa11.04□□□□□ -0.64
SNCA-202ENST00000345009 ABHD17BQ5VST6 288 aa11.04□□□□□ -0.64
SNCA-202ENST00000345009 TCTN3Q6NUS6 607 aa11.04□□□□□ -0.64
SNCA-202ENST00000345009 EPGNQ6UW88 154 aa11.04□□□□□ -0.64
SNCA-202ENST00000345009 ISLR2Q6UXK2 745 aa11.04□□□□□ -0.64
SNCA-202ENST00000345009 HSDL2Q6YN16 418 aa11.04□□□□□ -0.64
SNCA-202ENST00000345009 VPS37AQ8NEZ2 397 aa11.04□□□□□ -0.64
SNCA-202ENST00000345009 FDCSPQ8NFU4 85 aa11.04□□□□□ -0.64
SNCA-202ENST00000345009 OR7G1Q8NGA0 311 aa11.04□□□□□ -0.64
SNCA-202ENST00000345009 ZFP28Q8NHY6 868 aa11.04□□□□□ -0.64
SNCA-202ENST00000345009 GFM2Q969S9 779 aaKnown RBP11.04□□□□□ -0.64
SNCA-202ENST00000345009 PPWD1Q96BP3 646 aaKnown RBP11.04□□□□□ -0.64
SNCA-202ENST00000345009 ERP27Q96DN0 273 aa11.04□□□□□ -0.64
SNCA-202ENST00000345009 CNRIP1Q96F85 164 aaPredicted RBP11.04□□□□□ -0.64
SNCA-202ENST00000345009 ZBED6CLQ96FA7 236 aaPredicted RBP11.04□□□□□ -0.64
SNCA-202ENST00000345009 EGLN2Q96KS0 407 aa11.04□□□□□ -0.64
SNCA-202ENST00000345009 ZNF354BQ96LW1 612 aa11.04□□□□□ -0.64
SNCA-202ENST00000345009 ZBTB18Q99592 522 aa11.04□□□□□ -0.64
SNCA-202ENST00000345009 MESP1Q9BRJ9 268 aa11.04□□□□□ -0.64
SNCA-202ENST00000345009 CNPPD1Q9BV87 410 aa11.04□□□□□ -0.64
SNCA-202ENST00000345009 DPY30Q9C005 99 aa11.04□□□□□ -0.64
SNCA-202ENST00000345009 CCDC134Q9H6E4 229 aa11.04□□□□□ -0.64
SNCA-202ENST00000345009 EPS8L2Q9H6S3 715 aa11.04□□□□□ -0.64
SNCA-202ENST00000345009 WDR55Q9H6Y2 383 aaPredicted RBP11.04□□□□□ -0.64
SNCA-202ENST00000345009 CXorf21Q9HAI6 301 aa11.04□□□□□ -0.64
SNCA-202ENST00000345009 TCF7L2Q9NQB0 619 aa11.04□□□□□ -0.64
SNCA-202ENST00000345009 STMN3Q9NZ72 180 aa11.04□□□□□ -0.64
SNCA-202ENST00000345009 GIMAP2Q9UG22 337 aa11.04□□□□□ -0.64
SNCA-202ENST00000345009 CFL2Q9Y281 166 aa11.04□□□□□ -0.64
SNCA-202ENST00000345009 KMT2BQ9UMN6 2715 aaPredicted RBP11.03□□□□□ -0.64
SNCA-202ENST00000345009 TRBV11-1A0A0K0K1C0 115 aa11.03□□□□□ -0.64
SNCA-202ENST00000345009 DYTNA2CJ06 578 aa11.03□□□□□ -0.64
SNCA-202ENST00000345009 GABRR3A8MPY1 467 aa11.03□□□□□ -0.64
SNCA-202ENST00000345009 FCHO1O14526 889 aa11.03□□□□□ -0.64
SNCA-202ENST00000345009 SCAMP2O15127 329 aaKnown RBP11.03□□□□□ -0.64
SNCA-202ENST00000345009 UBDO15205 165 aa11.03□□□□□ -0.64
SNCA-202ENST00000345009 ITGAMP11215 1152 aa11.03□□□□□ -0.64
SNCA-202ENST00000345009 NCBP2P52298 156 aaKnown RBP eCLIP11.03□□□□□ -0.64
SNCA-202ENST00000345009 MANFP55145 182 aaKnown RBP11.03□□□□□ -0.64
SNCA-202ENST00000345009 STX1BP61266 288 aa11.03□□□□□ -0.64
SNCA-202ENST00000345009 SRSF11Q05519 484 aaKnown RBP11.03□□□□□ -0.64
SNCA-202ENST00000345009 Q0VFX4 171 aa11.03□□□□□ -0.64
SNCA-202ENST00000345009 MAP4K2Q12851 820 aa11.03□□□□□ -0.64
SNCA-202ENST00000345009 PTGR1Q14914 329 aa11.03□□□□□ -0.64
SNCA-202ENST00000345009 GSTA3Q16772 222 aa11.03□□□□□ -0.64
SNCA-202ENST00000345009 MEP1AQ16819 746 aa11.03□□□□□ -0.64
SNCA-202ENST00000345009 DPY19L1Q2PZI1 675 aa11.03□□□□□ -0.64
SNCA-202ENST00000345009 LINC00303Q3SY05 128 aa11.03□□□□□ -0.64
SNCA-202ENST00000345009 LACTB2Q53H82 288 aaPredicted RBP11.03□□□□□ -0.64
SNCA-202ENST00000345009 RNF111Q6ZNA4 994 aa11.03□□□□□ -0.64
SNCA-202ENST00000345009 SLC29A4Q7RTT9 530 aa11.03□□□□□ -0.64
SNCA-202ENST00000345009 RPS19BP1Q86WX3 136 aaKnown RBP11.03□□□□□ -0.64
SNCA-202ENST00000345009 CCDC116Q8IYX3 515 aa11.03□□□□□ -0.64
SNCA-202ENST00000345009 MMP21Q8N119 569 aa11.03□□□□□ -0.64
SNCA-202ENST00000345009 LGI4Q8N135 537 aa11.03□□□□□ -0.64
SNCA-202ENST00000345009 VWA5B2Q8N398 1253 aa11.03□□□□□ -0.64
SNCA-202ENST00000345009 ZADH2Q8N4Q0 377 aa11.03□□□□□ -0.64
SNCA-202ENST00000345009 NFAM1Q8NET5 270 aaPredicted RBP11.03□□□□□ -0.64
SNCA-202ENST00000345009 OR8K3Q8NH51 312 aa11.03□□□□□ -0.64
SNCA-202ENST00000345009 CLHC1Q8NHS4 586 aa11.03□□□□□ -0.64
SNCA-202ENST00000345009 SLC2A12Q8TD20 617 aa11.03□□□□□ -0.64
SNCA-202ENST00000345009 BRIX1Q8TDN6 353 aaKnown RBP11.03□□□□□ -0.64
SNCA-202ENST00000345009 ELP5Q8TE02 316 aa11.03□□□□□ -0.64
SNCA-202ENST00000345009 STON2Q8WXE9 905 aa11.03□□□□□ -0.64
SNCA-202ENST00000345009 UCN3Q969E3 161 aa11.03□□□□□ -0.64
SNCA-202ENST00000345009 NCLNQ969V3 563 aa11.03□□□□□ -0.64
SNCA-202ENST00000345009 ABHD17AQ96GS6 310 aa11.03□□□□□ -0.64
SNCA-202ENST00000345009 MAELQ96JY0 434 aaKnown RBP11.03□□□□□ -0.64
SNCA-202ENST00000345009 ZNF681Q96N22 645 aa11.03□□□□□ -0.64
SNCA-202ENST00000345009 RILPQ96NA2 401 aa11.03□□□□□ -0.64
SNCA-202ENST00000345009 SMAD5Q99717 465 aaKnown RBP11.03□□□□□ -0.64
SNCA-202ENST00000345009 CCDC28BQ9BUN5 200 aa11.03□□□□□ -0.64
SNCA-202ENST00000345009 BRINP2Q9C0B6 783 aa11.03□□□□□ -0.64
SNCA-202ENST00000345009 MRGBPQ9NV56 204 aa11.03□□□□□ -0.64
SNCA-202ENST00000345009 PTGFRNQ9P2B2 879 aa11.03□□□□□ -0.64
SNCA-202ENST00000345009 ATP6V1HQ9UI12 483 aa11.03□□□□□ -0.64
SNCA-202ENST00000345009 TRIM33Q9UPN9 1127 aa11.03□□□□□ -0.64
SNCA-202ENST00000345009 CHD6Q8TD26 2715 aa11.03□□□□□ -0.64
SNCA-202ENST00000345009 IGSF10Q6WRI0 2623 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms