RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 GHRHRQ02643 423 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 ZNF181Q2M3W8 571 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 WDR45BQ5MNZ6 344 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 TMEM107Q6UX40 140 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 SLC36A4Q6YBV0 504 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 NRARPQ7Z6K4 114 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 ZFAND4Q86XD8 727 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 DNAJC5GQ8N7S2 189 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 KCTD13Q8WZ19 329 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 IMP4Q96G21 291 aaKnown RBP8.31□□□□□ -1.08
RTN3-202ENST00000339997 FAM46AQ96IP4 442 aaKnown RBP8.31□□□□□ -1.08
RTN3-202ENST00000339997 CAMK1GQ96NX5 476 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 SLC38A3Q99624 504 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 WDR26Q9H7D7 661 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 RABL2AQ9UBK7 228 aaPredicted RBP8.31□□□□□ -1.08
RTN3-202ENST00000339997 SPO11Q9Y5K1 396 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 TRBV2A0A0J9YWF9 115 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 DUXAA6NLW8 204 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 DUSP11O75319 330 aaKnown RBP8.31□□□□□ -1.08
RTN3-202ENST00000339997 ZNF254O75437 659 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 SPARCP09486 303 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 H2AFB2P0C5Z0 115 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 AKR1C4P17516 323 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 AK4P27144 223 aaPredicted RBP8.31□□□□□ -1.08
RTN3-202ENST00000339997 RPL26P61254 145 aaKnown RBP8.31□□□□□ -1.08
RTN3-202ENST00000339997 PRKCZQ05513 592 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 SELPLGQ14242 412 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 FGL2Q14314 439 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 ZNF542PQ5EBM4 170 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 ZC3H14Q6PJT7 736 aaKnown RBP8.31□□□□□ -1.08
RTN3-202ENST00000339997 USP50Q70EL3 339 aaPredicted RBP8.31□□□□□ -1.08
RTN3-202ENST00000339997 LRRC70Q7Z2Q7 622 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 RETREG3Q86VR2 466 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 DCP2Q8IU60 420 aaKnown RBP8.31□□□□□ -1.08
RTN3-202ENST00000339997 CCDC71Q8IV32 467 aaPredicted RBP8.31□□□□□ -1.08
RTN3-202ENST00000339997 REM2Q8IYK8 340 aaPredicted RBP8.31□□□□□ -1.08
RTN3-202ENST00000339997 GJD3Q8N144 294 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 OR4K13Q8NH42 304 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 COQ10AQ96MF6 247 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 SORBS1Q9BX66 1292 aaKnown RBP8.31□□□□□ -1.08
RTN3-202ENST00000339997 ATG5Q9H1Y0 275 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 REEP4Q9H6H4 257 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 LTB4R2Q9NPC1 389 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 CD93Q9NPY3 652 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 SLAMF7Q9NQ25 335 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 ELOVL2Q9NXB9 296 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 SLIT2O94813 1529 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 TEX13CA0A0J9YWL9 993 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 A0A1W2PQ09 198 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 GXYLT2A0PJZ3 443 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 TTC34A8MYJ7 566 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 UBFD1O14562 309 aaKnown RBP8.31□□□□□ -1.08
RTN3-202ENST00000339997 EEDO75530 441 aaKnown RBP8.31□□□□□ -1.08
RTN3-202ENST00000339997 RCBTB2O95199 551 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 CRYZL1O95825 349 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 PLGP00747 810 aaPredicted RBP8.31□□□□□ -1.08
RTN3-202ENST00000339997 GSTM3P21266 225 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 F8A1P23610 371 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 SHMT2P34897 504 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 HTR7P34969 479 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 RBM34P42696 430 aaKnown RBP8.31□□□□□ -1.08
RTN3-202ENST00000339997 BTN1A1Q13410 526 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 CDKL4Q5MAI5 379 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 LY6G5CQ5SRR4 150 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 TMCO2Q7Z6W1 182 aaPredicted RBP8.31□□□□□ -1.08
RTN3-202ENST00000339997 UBE2Q1Q7Z7E8 422 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 COMMD7Q86VX2 200 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 OR4K5Q8NGD3 323 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 MFSD8Q8NHS3 518 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 HUS1BQ8NHY5 278 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 CCDC107Q8WV48 283 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 ARMC1Q9NVT9 282 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 LAMP5Q9UJQ1 280 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 INTS6Q9UL03 887 aaKnown RBP8.31□□□□□ -1.08
RTN3-202ENST00000339997 IFT52Q9Y366 437 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 AK6Q9Y3D8 172 aaKnown RBP8.31□□□□□ -1.08
RTN3-202ENST00000339997 ASB3Q9Y575 518 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 CARNS1A5YM72 827 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 ZNF208O43345 1280 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 ZNF821O75541 412 aaPredicted RBP8.31□□□□□ -1.08
RTN3-202ENST00000339997 RBBP9O75884 186 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 GJA5P36382 358 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 ERVK-25P63136 954 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 HSD17B12Q53GQ0 312 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 CNIH2Q6PI25 160 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 BEND4Q6ZU67 534 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 NUP54Q7Z3B4 507 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 C6orf120Q7Z4R8 191 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 SLC44A3Q8N4M1 653 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 OR8J3Q8NGG0 315 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 OR8J1Q8NGP2 316 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 NPLOC4Q8TAT6 608 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 TBC1D15Q8TC07 691 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 CD99L2Q8TCZ2 262 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 TMEM125Q96AQ2 219 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 PIP5K1AQ99755 562 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 EIF5A2Q9GZV4 153 aaKnown RBP8.31□□□□□ -1.08
RTN3-202ENST00000339997 RIMS3Q9UJD0 308 aa8.31□□□□□ -1.08
RTN3-202ENST00000339997 NUP214P35658 2090 aaPredicted RBP8.31□□□□□ -1.08
RTN3-202ENST00000339997 TVP23AA6NH52 213 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 75.9 ms