RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 FTCDNL1E5RQL4 147 aa13.69□□□□□ -0.22
COL7A1-201ENST00000328333 GPR137BO60478 399 aa13.69□□□□□ -0.22
COL7A1-201ENST00000328333 AKAIN1P0CW23 69 aa13.69□□□□□ -0.22
COL7A1-201ENST00000328333 PLP2Q04941 152 aa13.69□□□□□ -0.22
COL7A1-201ENST00000328333 GAD2Q05329 585 aa13.69□□□□□ -0.22
COL7A1-201ENST00000328333 PLEKHS1Q5SXH7 462 aa13.69□□□□□ -0.22
COL7A1-201ENST00000328333 TRIM46Q7Z4K8 759 aa13.69□□□□□ -0.22
COL7A1-201ENST00000328333 OR4F6Q8NGB9 312 aa13.69□□□□□ -0.22
COL7A1-201ENST00000328333 TYROBPO43914 113 aa13.69□□□□□ -0.22
COL7A1-201ENST00000328333 BEST1O76090 585 aa13.69□□□□□ -0.22
COL7A1-201ENST00000328333 PPIGQ13427 754 aaKnown RBP eCLIP13.69□□□□□ -0.223e-7■■■■■ 38.8
COL7A1-201ENST00000328333 OR2M4Q96R27 311 aa13.69□□□□□ -0.22
COL7A1-201ENST00000328333 WDR26Q9H7D7 661 aa13.69□□□□□ -0.22
COL7A1-201ENST00000328333 PNO1Q9NRX1 252 aaKnown RBP13.69□□□□□ -0.22
COL7A1-201ENST00000328333 OSER1Q9NX31 292 aa13.69□□□□□ -0.22
COL7A1-201ENST00000328333 ZNF850A8MQ14 1090 aa13.69□□□□□ -0.22
COL7A1-201ENST00000328333 H3BMQ9 156 aa13.69□□□□□ -0.22
COL7A1-201ENST00000328333 RIDAP52758 137 aaKnown RBP13.69□□□□□ -0.22
COL7A1-201ENST00000328333 LILRA4P59901 499 aa13.69□□□□□ -0.22
COL7A1-201ENST00000328333 UFM1P61960 85 aa13.69□□□□□ -0.22
COL7A1-201ENST00000328333 ERVK-25P63136 954 aa13.69□□□□□ -0.22
COL7A1-201ENST00000328333 MLC1Q15049 377 aa13.69□□□□□ -0.22
COL7A1-201ENST00000328333 SAMD7Q7Z3H4 446 aa13.69□□□□□ -0.22
COL7A1-201ENST00000328333 GLYATL2Q8WU03 294 aa13.69□□□□□ -0.22
COL7A1-201ENST00000328333 COG8Q96MW5 612 aa13.69□□□□□ -0.22
COL7A1-201ENST00000328333 SEC61A2Q9H9S3 476 aa13.69□□□□□ -0.22
COL7A1-201ENST00000328333 BLOC1S5-TXNDC5H3BN57 136 aa13.69□□□□□ -0.22
COL7A1-201ENST00000328333 PRSS3P35030 304 aa13.69□□□□□ -0.22
COL7A1-201ENST00000328333 AGAP7PQ5VUJ5 663 aa13.69□□□□□ -0.22
COL7A1-201ENST00000328333 LRRTM4Q86VH4 590 aa13.69□□□□□ -0.22
COL7A1-201ENST00000328333 OR56B4Q8NH76 319 aa13.69□□□□□ -0.22
COL7A1-201ENST00000328333 CNIH3Q8TBE1 160 aa13.69□□□□□ -0.22
COL7A1-201ENST00000328333 TRIB2Q92519 343 aa13.69□□□□□ -0.22
COL7A1-201ENST00000328333 J3KR12 359 aa13.69□□□□□ -0.22
COL7A1-201ENST00000328333 INPPL1O15357 1258 aa13.69□□□□□ -0.22
COL7A1-201ENST00000328333 LCMT2O60294 686 aaKnown RBP13.69□□□□□ -0.22
COL7A1-201ENST00000328333 WDPCPO95876 746 aa13.69□□□□□ -0.22
COL7A1-201ENST00000328333 HLA-HP01893 362 aa13.69□□□□□ -0.22
COL7A1-201ENST00000328333 LAG3P18627 525 aa13.69□□□□□ -0.22
COL7A1-201ENST00000328333 PTH2RP49190 550 aa13.69□□□□□ -0.22
COL7A1-201ENST00000328333 ERVK-21P61565 698 aa13.69□□□□□ -0.22
COL7A1-201ENST00000328333 LDB1Q86U70 411 aaPredicted RBP13.69□□□□□ -0.22
COL7A1-201ENST00000328333 FIBCD1Q8N539 461 aa13.69□□□□□ -0.22
COL7A1-201ENST00000328333 TRAM1L1Q8N609 369 aa13.69□□□□□ -0.22
COL7A1-201ENST00000328333 ZNF559Q9BR84 538 aa13.69□□□□□ -0.22
COL7A1-201ENST00000328333 GGT3PA6NGU5 568 aa13.68□□□□□ -0.22
COL7A1-201ENST00000328333 GGT2P36268 569 aa13.68□□□□□ -0.22
COL7A1-201ENST00000328333 THBS3P49746 956 aa13.68□□□□□ -0.22
COL7A1-201ENST00000328333 TMEM236Q5W0B7 351 aa13.68□□□□□ -0.22
COL7A1-201ENST00000328333 KAZALD1Q96I82 304 aa13.68□□□□□ -0.22
COL7A1-201ENST00000328333 WRAP53Q9BUR4 548 aaKnown RBP13.68□□□□□ -0.22
COL7A1-201ENST00000328333 REEP4Q9H6H4 257 aa13.68□□□□□ -0.22
COL7A1-201ENST00000328333 SPDEFO95238 335 aa13.68□□□□□ -0.22
COL7A1-201ENST00000328333 SOX14O95416 240 aa13.68□□□□□ -0.22
COL7A1-201ENST00000328333 GAAP10253 952 aa13.68□□□□□ -0.22
COL7A1-201ENST00000328333 ATP1B2P14415 290 aaPredicted RBP13.68□□□□□ -0.22
COL7A1-201ENST00000328333 SRPXP78539 464 aa13.68□□□□□ -0.22
COL7A1-201ENST00000328333 KBTBD6Q86V97 674 aa13.68□□□□□ -0.22
COL7A1-201ENST00000328333 POLDIP3Q9BY77 421 aaKnown RBP13.68□□□□□ -0.22
COL7A1-201ENST00000328333 EBF1Q9UH73 591 aa13.68□□□□□ -0.22
COL7A1-201ENST00000328333 WDR45Q9Y484 360 aa13.68□□□□□ -0.22
COL7A1-201ENST00000328333 E9PI62 339 aa13.68□□□□□ -0.22
COL7A1-201ENST00000328333 JUNP05412 331 aaKnown RBP13.68□□□□□ -0.22
COL7A1-201ENST00000328333 ABHD15Q6UXT9 468 aa13.68□□□□□ -0.22
COL7A1-201ENST00000328333 GOLGA7Q7Z5G4 137 aa13.68□□□□□ -0.22
COL7A1-201ENST00000328333 SLC15A4Q8N697 577 aa13.68□□□□□ -0.22
COL7A1-201ENST00000328333 ASB13Q8WXK3 278 aa13.68□□□□□ -0.22
COL7A1-201ENST00000328333 MAL2Q969L2 176 aa13.68□□□□□ -0.22
COL7A1-201ENST00000328333 HDHD5Q9BXW7 423 aa13.68□□□□□ -0.22
COL7A1-201ENST00000328333 FMO6PO60774 539 aa13.68□□□□□ -0.22
COL7A1-201ENST00000328333 TMEM63AO94886 807 aa13.68□□□□□ -0.22
COL7A1-201ENST00000328333 MAP1SQ66K74 1059 aaPredicted RBP13.68□□□□□ -0.22
COL7A1-201ENST00000328333 ENPP7Q6UWV6 458 aa13.68□□□□□ -0.22
COL7A1-201ENST00000328333 C1orf52Q8N6N3 182 aaKnown RBP13.68□□□□□ -0.22
COL7A1-201ENST00000328333 LFNGQ8NES3 379 aa13.68□□□□□ -0.22
COL7A1-201ENST00000328333 B3GNT5Q9BYG0 378 aa13.68□□□□□ -0.22
COL7A1-201ENST00000328333 UFSP2Q9NUQ7 469 aa13.68□□□□□ -0.22
COL7A1-201ENST00000328333 PARPBPQ9NWS1 579 aa13.68□□□□□ -0.22
COL7A1-201ENST00000328333 ANKMY1Q9P2S6 941 aa13.68□□□□□ -0.22
COL7A1-201ENST00000328333 NAALAD2Q9Y3Q0 740 aa13.68□□□□□ -0.22
COL7A1-201ENST00000328333 ZNF705FA8MVS1 300 aaPredicted RBP13.68□□□□□ -0.22
COL7A1-201ENST00000328333 MEN1O00255 615 aa13.68□□□□□ -0.22
COL7A1-201ENST00000328333 UBFD1O14562 309 aaKnown RBP13.68□□□□□ -0.22
COL7A1-201ENST00000328333 ZNF705DP0CH99 300 aaPredicted RBP13.68□□□□□ -0.22
COL7A1-201ENST00000328333 ZNF705BP0CI00 300 aaPredicted RBP13.68□□□□□ -0.22
COL7A1-201ENST00000328333 GCGRP47871 477 aa13.68□□□□□ -0.22
COL7A1-201ENST00000328333 RHBDL3P58872 404 aa13.68□□□□□ -0.22
COL7A1-201ENST00000328333 RCAN2Q14206 197 aa13.68□□□□□ -0.22
COL7A1-201ENST00000328333 EIF2B1Q14232 305 aaKnown RBP13.68□□□□□ -0.22
COL7A1-201ENST00000328333 BATFQ16520 125 aa13.68□□□□□ -0.22
COL7A1-201ENST00000328333 MYLK3Q32MK0 819 aa13.68□□□□□ -0.22
COL7A1-201ENST00000328333 DPY19L2P1Q6NXN4 242 aa13.68□□□□□ -0.22
COL7A1-201ENST00000328333 KCTD20Q7Z5Y7 419 aa13.68□□□□□ -0.22
COL7A1-201ENST00000328333 ZCCHC10Q8TBK6 192 aa13.68□□□□□ -0.22
COL7A1-201ENST00000328333 JSRP1Q96MG2 331 aaPredicted RBP13.68□□□□□ -0.22
COL7A1-201ENST00000328333 SMOC2Q9H3U7 446 aa13.68□□□□□ -0.22
COL7A1-201ENST00000328333 CLEC4EQ9ULY5 219 aa13.68□□□□□ -0.22
COL7A1-201ENST00000328333 AMY2AP04746 511 aa13.68□□□□□ -0.22
COL7A1-201ENST00000328333 SBK2P0C263 348 aa13.68□□□□□ -0.22
COL7A1-201ENST00000328333 CREB1P16220 341 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms