RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 PPP1R3EQ9H7J1 279 aa13.64□□□□□ -0.23
SDC1-201ENST00000254351 KLHL1Q9NR64 748 aa13.64□□□□□ -0.23
SDC1-201ENST00000254351 HCN2Q9UL51 889 aa13.64□□□□□ -0.23
SDC1-201ENST00000254351 RUVBL1Q9Y265 456 aaKnown RBP13.64□□□□□ -0.23
SDC1-201ENST00000254351 GSTK1Q9Y2Q3 226 aa13.64□□□□□ -0.23
SDC1-201ENST00000254351 TRPV2Q9Y5S1 764 aa13.64□□□□□ -0.23
SDC1-201ENST00000254351 PATJQ8NI35 1801 aa13.63□□□□□ -0.23
SDC1-201ENST00000254351 NPIPB15A6NHN6 443 aaPredicted RBP13.63□□□□□ -0.23
SDC1-201ENST00000254351 H3BNC9 293 aa13.63□□□□□ -0.23
SDC1-201ENST00000254351 TRIM77I1YAP6 450 aa13.63□□□□□ -0.23
SDC1-201ENST00000254351 NME6O75414 186 aaPredicted RBP13.63□□□□□ -0.23
SDC1-201ENST00000254351 BDKRB1P46663 353 aa13.63□□□□□ -0.23
SDC1-201ENST00000254351 TAS2R50P59544 299 aa13.63□□□□□ -0.23
SDC1-201ENST00000254351 NOGQ13253 232 aa13.63□□□□□ -0.23
SDC1-201ENST00000254351 RAET1GQ6H3X3 334 aa13.63□□□□□ -0.23
SDC1-201ENST00000254351 FAM9CQ8IZT9 166 aa13.63□□□□□ -0.23
SDC1-201ENST00000254351 WDR48Q8TAF3 677 aa13.63□□□□□ -0.23
SDC1-201ENST00000254351 SCAMP4Q969E2 229 aa13.63□□□□□ -0.23
SDC1-201ENST00000254351 FATE1Q969F0 183 aa13.63□□□□□ -0.23
SDC1-201ENST00000254351 FBXW5Q969U6 566 aa13.63□□□□□ -0.23
SDC1-201ENST00000254351 RNFT2Q96EX2 444 aa13.63□□□□□ -0.23
SDC1-201ENST00000254351 CREBZFQ9NS37 354 aa13.63□□□□□ -0.23
SDC1-201ENST00000254351 ZFR2Q9UPR6 939 aaKnown RBP13.63□□□□□ -0.23
SDC1-201ENST00000254351 CDH10Q9Y6N8 788 aa13.63□□□□□ -0.23
SDC1-201ENST00000254351 PTPRDP23468 1912 aa13.63□□□□□ -0.23
SDC1-201ENST00000254351 MPC2O95563 127 aa13.63□□□□□ -0.23
SDC1-201ENST00000254351 KLK1P06870 262 aa13.63□□□□□ -0.23
SDC1-201ENST00000254351 ITGB7P26010 798 aa13.63□□□□□ -0.23
SDC1-201ENST00000254351 VIPR1P32241 457 aa13.63□□□□□ -0.23
SDC1-201ENST00000254351 ATP5C1P36542 298 aaKnown RBP13.63□□□□□ -0.23
SDC1-201ENST00000254351 CDH4P55283 916 aa13.63□□□□□ -0.23
SDC1-201ENST00000254351 PFN3P60673 137 aa13.63□□□□□ -0.23
SDC1-201ENST00000254351 B4GALNT1Q00973 533 aa13.63□□□□□ -0.23
SDC1-201ENST00000254351 COX10Q12887 443 aa13.63□□□□□ -0.23
SDC1-201ENST00000254351 CRHR2Q13324 411 aa13.63□□□□□ -0.23
SDC1-201ENST00000254351 MFSD13AQ14CX5 517 aa13.63□□□□□ -0.23
SDC1-201ENST00000254351 PRSS53Q2L4Q9 553 aa13.63□□□□□ -0.23
SDC1-201ENST00000254351 SYT14P1Q58G82 188 aa13.63□□□□□ -0.23
SDC1-201ENST00000254351 ARSKQ6UWY0 536 aa13.63□□□□□ -0.23
SDC1-201ENST00000254351 TMEM91Q6ZNR0 172 aa13.63□□□□□ -0.23
SDC1-201ENST00000254351 ESPNLQ6ZVH7 1005 aa13.63□□□□□ -0.23
SDC1-201ENST00000254351 THOC6Q86W42 341 aaKnown RBP13.63□□□□□ -0.23
SDC1-201ENST00000254351 SLC7A13Q8TCU3 470 aa13.63□□□□□ -0.23
SDC1-201ENST00000254351 MYLIPQ8WY64 445 aa13.63□□□□□ -0.23
SDC1-201ENST00000254351 TTTY10Q9BZA0 68 aa13.63□□□□□ -0.23
SDC1-201ENST00000254351 KCTD5Q9NXV2 234 aa13.63□□□□□ -0.23
SDC1-201ENST00000254351 MPZL2O60487 215 aa13.62□□□□□ -0.23
SDC1-201ENST00000254351 TFPIP10646 304 aa13.62□□□□□ -0.23
SDC1-201ENST00000254351 JUPP14923 745 aa13.62□□□□□ -0.23
SDC1-201ENST00000254351 CTRB1P17538 263 aa13.62□□□□□ -0.23
SDC1-201ENST00000254351 RAB14P61106 215 aa13.62□□□□□ -0.23
SDC1-201ENST00000254351 CTRB2Q6GPI1 263 aa13.62□□□□□ -0.23
SDC1-201ENST00000254351 HSDL2Q6YN16 418 aa13.62□□□□□ -0.23
SDC1-201ENST00000254351 IQCHQ86VS3 1027 aa13.62□□□□□ -0.23
SDC1-201ENST00000254351 SAMD12Q8N8I0 201 aa13.62□□□□□ -0.23
SDC1-201ENST00000254351 UFD1Q92890 307 aa13.62□□□□□ -0.23
SDC1-201ENST00000254351 C11orf24Q96F05 449 aaPredicted RBP13.62□□□□□ -0.23
SDC1-201ENST00000254351 MARVELD1Q9BSK0 173 aa13.62□□□□□ -0.23
SDC1-201ENST00000254351 RSPO3Q9BXY4 272 aaPredicted RBP13.62□□□□□ -0.23
SDC1-201ENST00000254351 SPNS1Q9H2V7 528 aa13.62□□□□□ -0.23
SDC1-201ENST00000254351 ENAMQ9NRM1 1142 aa13.62□□□□□ -0.23
SDC1-201ENST00000254351 REV1Q9UBZ9 1251 aa13.62□□□□□ -0.23
SDC1-201ENST00000254351 DOCK3Q8IZD9 2030 aa13.62□□□□□ -0.23
SDC1-201ENST00000254351 CA12O43570 354 aa13.62□□□□□ -0.23
SDC1-201ENST00000254351 RAB36O95755 333 aa13.62□□□□□ -0.23
SDC1-201ENST00000254351 RAF1P04049 648 aa13.62□□□□□ -0.23
SDC1-201ENST00000254351 GIFP27352 417 aa13.62□□□□□ -0.23
SDC1-201ENST00000254351 WNT4P56705 351 aa13.62□□□□□ -0.23
SDC1-201ENST00000254351 HSPB3Q12988 150 aa13.62□□□□□ -0.23
SDC1-201ENST00000254351 KLHL12Q53G59 568 aa13.62□□□□□ -0.23
SDC1-201ENST00000254351 LUZP2Q86TE4 346 aa13.62□□□□□ -0.23
SDC1-201ENST00000254351 LRRTM4Q86VH4 590 aa13.62□□□□□ -0.23
SDC1-201ENST00000254351 APCDD1Q8J025 514 aa13.62□□□□□ -0.23
SDC1-201ENST00000254351 CLDN22Q8N7P3 220 aa13.62□□□□□ -0.23
SDC1-201ENST00000254351 OR4D11Q8NGI4 311 aa13.62□□□□□ -0.23
SDC1-201ENST00000254351 PPCDCQ96CD2 204 aa13.62□□□□□ -0.23
SDC1-201ENST00000254351 LINC00052Q96N35 136 aa13.62□□□□□ -0.23
SDC1-201ENST00000254351 ATF6BQ99941 703 aa13.62□□□□□ -0.23
SDC1-201ENST00000254351 YIPF4Q9BSR8 244 aa13.62□□□□□ -0.23
SDC1-201ENST00000254351 PLA2G12AQ9BZM1 189 aa13.62□□□□□ -0.23
SDC1-201ENST00000254351 ABCG4Q9H172 646 aa13.62□□□□□ -0.23
SDC1-201ENST00000254351 ZFP64Q9NPA5 681 aa13.62□□□□□ -0.23
SDC1-201ENST00000254351 H7C0S8 307 aa13.62□□□□□ -0.23
SDC1-201ENST00000254351 FRS3O43559 492 aa13.62□□□□□ -0.23
SDC1-201ENST00000254351 ACADMP11310 421 aa13.62□□□□□ -0.23
SDC1-201ENST00000254351 CSKP41240 450 aa13.62□□□□□ -0.23
SDC1-201ENST00000254351 EVX1P49640 407 aa13.62□□□□□ -0.23
SDC1-201ENST00000254351 NTRK2Q16620 822 aa13.62□□□□□ -0.23
SDC1-201ENST00000254351 DEFB115Q30KQ5 88 aa13.62□□□□□ -0.23
SDC1-201ENST00000254351 TIGD3Q6B0B8 471 aa13.62□□□□□ -0.23
SDC1-201ENST00000254351 GPR155Q7Z3F1 870 aa13.62□□□□□ -0.23
SDC1-201ENST00000254351 KIAA0907Q7Z7F0 614 aaPredicted RBP13.62□□□□□ -0.23
SDC1-201ENST00000254351 KIF18BQ86Y91 864 aa13.62□□□□□ -0.23
SDC1-201ENST00000254351 IZUMO1Q8IYV9 350 aa13.62□□□□□ -0.23
SDC1-201ENST00000254351 ZNF366Q8N895 744 aa13.62□□□□□ -0.23
SDC1-201ENST00000254351 OR8J1Q8NGP2 316 aa13.62□□□□□ -0.23
SDC1-201ENST00000254351 TTC9Q92623 222 aa13.62□□□□□ -0.23
SDC1-201ENST00000254351 ARMC5Q96C12 935 aa13.62□□□□□ -0.23
SDC1-201ENST00000254351 GPA33Q99795 319 aa13.62□□□□□ -0.23
SDC1-201ENST00000254351 THAP7Q9BT49 309 aaPredicted RBP13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms