RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 KCNQ2O43526 872 aa21.04■□□□□ 0.96
CLN3-252ENST00000636907 TRPC5Q9UL62 973 aaPredicted RBP21.04■□□□□ 0.96
CLN3-252ENST00000636907 IBTKQ9P2D0 1353 aaPredicted RBP21.03■□□□□ 0.96
CLN3-252ENST00000636907 NUP188Q5SRE5 1749 aa21.03■□□□□ 0.96
CLN3-252ENST00000636907 CYP19A1P11511 503 aaPredicted RBP21.02■□□□□ 0.96
CLN3-252ENST00000636907 UTYO14607 1347 aa21.02■□□□□ 0.96
CLN3-252ENST00000636907 GRM8O00222 908 aa21.02■□□□□ 0.95
CLN3-252ENST00000636907 FAM161AQ3B820 660 aa21.02■□□□□ 0.95
CLN3-252ENST00000636907 C8orf34Q49A92 452 aa21.01■□□□□ 0.95
CLN3-252ENST00000636907 GCKRQ14397 625 aa21■□□□□ 0.95
CLN3-252ENST00000636907 SSH3Q8TE77 659 aa21■□□□□ 0.95
CLN3-252ENST00000636907 AFDNP55196 1824 aaKnown RBP21■□□□□ 0.95
CLN3-252ENST00000636907 PALLDQ8WX93 1383 aa21■□□□□ 0.95
CLN3-252ENST00000636907 ONECUT3O60422 494 aaPredicted RBP20.99■□□□□ 0.95
CLN3-252ENST00000636907 PPP1R42Q7Z4L9 355 aa20.99■□□□□ 0.95
CLN3-252ENST00000636907 ATP5J2-PTCD1G3V325 749 aa20.99■□□□□ 0.95
CLN3-252ENST00000636907 ZBTB3Q9H5J0 574 aa20.99■□□□□ 0.95
CLN3-252ENST00000636907 QTRT2Q9H974 415 aaKnown RBP20.99■□□□□ 0.95
CLN3-252ENST00000636907 ZNF330Q9Y3S2 320 aaPredicted RBP20.99■□□□□ 0.95
CLN3-252ENST00000636907 LOC102724428A0A0B4J2F2 783 aa20.98■□□□□ 0.95
CLN3-252ENST00000636907 SIK1P57059 783 aa20.98■□□□□ 0.95
CLN3-252ENST00000636907 POLA2Q14181 598 aa20.98■□□□□ 0.95
CLN3-252ENST00000636907 SMARCC1Q92922 1105 aaPredicted RBP20.98■□□□□ 0.95
CLN3-252ENST00000636907 SUCLG2Q96I99 432 aa20.98■□□□□ 0.95
CLN3-252ENST00000636907 HDAC5Q9UQL6 1122 aa20.98■□□□□ 0.95
CLN3-252ENST00000636907 EXOC6BQ9Y2D4 811 aa20.98■□□□□ 0.95
CLN3-252ENST00000636907 ZBTB1Q9Y2K1 713 aa20.98■□□□□ 0.95
CLN3-252ENST00000636907 CICQ96RK0 1608 aaPredicted RBP20.98■□□□□ 0.95
CLN3-252ENST00000636907 APBB1O00213 710 aa20.97■□□□□ 0.95
CLN3-252ENST00000636907 ATP6V1AP38606 617 aa20.97■□□□□ 0.95
CLN3-252ENST00000636907 SRGAP3O43295 1099 aa20.96■□□□□ 0.95
CLN3-252ENST00000636907 MTX1Q13505 466 aa20.96■□□□□ 0.95
CLN3-252ENST00000636907 FAM182BQ5T319 152 aa20.96■□□□□ 0.95
CLN3-252ENST00000636907 SEPT12Q8IYM1 358 aa20.96■□□□□ 0.95
CLN3-252ENST00000636907 KAZALD1Q96I82 304 aa20.96■□□□□ 0.95
CLN3-252ENST00000636907 NHSQ6T4R5 1651 aa20.96■□□□□ 0.95
CLN3-252ENST00000636907 SMARCA5O60264 1052 aaPredicted RBP20.96■□□□□ 0.95
CLN3-252ENST00000636907 ZBTB47Q9UFB7 747 aaPredicted RBP20.96■□□□□ 0.95
CLN3-252ENST00000636907 ITPK1Q13572 414 aa20.95■□□□□ 0.94
CLN3-252ENST00000636907 KIF6Q6ZMV9 814 aa20.95■□□□□ 0.94
CLN3-252ENST00000636907 PTF1AQ7RTS3 328 aa20.95■□□□□ 0.94
CLN3-252ENST00000636907 C16orf71Q8IYS4 520 aaPredicted RBP20.93■□□□□ 0.94
CLN3-252ENST00000636907 JARID2Q92833 1246 aaPredicted RBP20.93■□□□□ 0.94
CLN3-252ENST00000636907 BICC1Q9H694 974 aaKnown RBP20.93■□□□□ 0.94
CLN3-252ENST00000636907 A0A087WZG4 1122 aa20.93■□□□□ 0.94
CLN3-252ENST00000636907 IL6STP40189 918 aaPredicted RBP20.93■□□□□ 0.94
CLN3-252ENST00000636907 INTS5Q6P9B9 1019 aaKnown RBP20.93■□□□□ 0.94
CLN3-252ENST00000636907 BCL11AQ9H165 835 aa20.93■□□□□ 0.94
CLN3-252ENST00000636907 RREB1Q92766 1687 aa20.92■□□□□ 0.94
CLN3-252ENST00000636907 BTAF1O14981 1849 aa20.92■□□□□ 0.94
CLN3-252ENST00000636907 MAP3K15Q6ZN16 1313 aa20.92■□□□□ 0.94
CLN3-252ENST00000636907 CRKLP46109 303 aaKnown RBP20.92■□□□□ 0.94
CLN3-252ENST00000636907 UBE3BQ7Z3V4 1068 aa20.92■□□□□ 0.94
CLN3-252ENST00000636907 CCDC87Q9NVE4 849 aa20.92■□□□□ 0.94
CLN3-252ENST00000636907 CWC25Q9NXE8 425 aaPredicted RBP20.92■□□□□ 0.94
CLN3-252ENST00000636907 ZNF831Q5JPB2 1677 aa20.92■□□□□ 0.94
CLN3-252ENST00000636907 CASP7P55210 303 aa20.91■□□□□ 0.94
CLN3-252ENST00000636907 EPHA10Q5JZY3 1008 aa20.91■□□□□ 0.94
CLN3-252ENST00000636907 PLEKHM2Q8IWE5 1019 aa20.91■□□□□ 0.94
CLN3-252ENST00000636907 ARXQ96QS3 562 aa20.91■□□□□ 0.94
CLN3-252ENST00000636907 ISCA1Q9BUE6 129 aa20.91■□□□□ 0.94
CLN3-252ENST00000636907 LRRCC1Q9C099 1032 aa20.91■□□□□ 0.94
CLN3-252ENST00000636907 SURF6O75683 361 aaKnown RBP20.9■□□□□ 0.94
CLN3-252ENST00000636907 TCIRG1Q13488 830 aa20.9■□□□□ 0.94
CLN3-252ENST00000636907 CCDC191Q8NCU4 936 aa20.9■□□□□ 0.94
CLN3-252ENST00000636907 OTUD7AQ8TE49 926 aaPredicted RBP20.9■□□□□ 0.94
CLN3-252ENST00000636907 COL5A3P25940 1745 aaPredicted RBP20.9■□□□□ 0.94
CLN3-252ENST00000636907 COL15A1P39059 1388 aa20.9■□□□□ 0.94
CLN3-252ENST00000636907 H7C1W4 665 aa20.89■□□□□ 0.94
CLN3-252ENST00000636907 SBF2Q86WG5 1849 aa20.89■□□□□ 0.93
CLN3-252ENST00000636907 EIF5P55010 431 aaKnown RBP20.89■□□□□ 0.93
CLN3-252ENST00000636907 RAB11FIP3O75154 756 aa20.88■□□□□ 0.93
CLN3-252ENST00000636907 HLFQ16534 295 aa20.88■□□□□ 0.93
CLN3-252ENST00000636907 GIGYF2Q6Y7W6 1299 aaKnown RBP20.88■□□□□ 0.93
CLN3-252ENST00000636907 NOP58Q9Y2X3 529 aaKnown RBP20.88■□□□□ 0.93
CLN3-252ENST00000636907 MYH14Q7Z406 1995 aaKnown RBP20.87■□□□□ 0.93
CLN3-252ENST00000636907 TRIM28Q13263 835 aaKnown RBP20.87■□□□□ 0.93
CLN3-252ENST00000636907 BMP2KLQ5H9B9 411 aa20.87■□□□□ 0.93
CLN3-252ENST00000636907 NPM2Q86SE8 214 aaKnown RBP20.87■□□□□ 0.93
CLN3-252ENST00000636907 DZIP3Q86Y13 1208 aaKnown RBP20.87■□□□□ 0.93
CLN3-252ENST00000636907 LINC00116Q8NCU8 138 aa20.86■□□□□ 0.93
CLN3-252ENST00000636907 TBC1D2BQ9UPU7 963 aa20.86■□□□□ 0.93
CLN3-252ENST00000636907 PA2G4Q9UQ80 394 aaKnown RBP20.86■□□□□ 0.93
CLN3-252ENST00000636907 RABL6Q3YEC7 729 aaPredicted RBP20.86■□□□□ 0.93
CLN3-252ENST00000636907 ERVV-1B6SEH8 477 aa20.85■□□□□ 0.93
CLN3-252ENST00000636907 KCNQ4P56696 695 aa20.85■□□□□ 0.93
CLN3-252ENST00000636907 HSP90AB4PQ58FF6 505 aa20.85■□□□□ 0.93
CLN3-252ENST00000636907 HSP90AB3PQ58FF7 597 aa20.85■□□□□ 0.93
CLN3-252ENST00000636907 RHPN1Q8TCX5 695 aa20.85■□□□□ 0.93
CLN3-252ENST00000636907 ANKRD36CQ5JPF3 1778 aa20.85■□□□□ 0.93
CLN3-252ENST00000636907 RTL5Q5HYW3 569 aaPredicted RBP20.84■□□□□ 0.93
CLN3-252ENST00000636907 ZNF772Q68DY9 489 aaPredicted RBP20.84■□□□□ 0.93
CLN3-252ENST00000636907 KIF1BPQ96EK5 621 aa20.84■□□□□ 0.93
CLN3-252ENST00000636907 BRWD3Q6RI45 1802 aa20.84■□□□□ 0.93
CLN3-252ENST00000636907 SALL3Q9BXA9 1300 aa20.84■□□□□ 0.93
CLN3-252ENST00000636907 NUP98P52948 1817 aa20.84■□□□□ 0.93
CLN3-252ENST00000636907 GSPT1P15170 499 aaKnown RBP20.83■□□□□ 0.93
CLN3-252ENST00000636907 TTC22Q5TAA0 569 aa20.83■□□□□ 0.93
CLN3-252ENST00000636907 IL1RAPL2Q9NP60 686 aa20.83■□□□□ 0.93
CLN3-252ENST00000636907 SEC24BO95487 1268 aa20.83■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms