RNA–Protein interactions for RNA: ENST00000622668.4

HDAC9-229, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 4,279 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-229ENST00000622668 KIF3AQ9Y496 699 aa10.97□□□□□ -0.65
HDAC9-229ENST00000622668 FEZ1Q99689 392 aa10.96□□□□□ -0.65
HDAC9-229ENST00000622668 PHAXQ9H814 394 aaKnown RBP10.96□□□□□ -0.65
HDAC9-229ENST00000622668 PER1O15534 1290 aaPredicted RBP10.96□□□□□ -0.66
HDAC9-229ENST00000622668 MMP10P09238 476 aa10.96□□□□□ -0.66
HDAC9-229ENST00000622668 PDE3AQ14432 1141 aa10.96□□□□□ -0.66
HDAC9-229ENST00000622668 BOLA2Q9H3K6 86 aa10.96□□□□□ -0.66
HDAC9-229ENST00000622668 GRM8O00222 908 aa10.95□□□□□ -0.66
HDAC9-229ENST00000622668 UFL1O94874 794 aa10.95□□□□□ -0.66
HDAC9-229ENST00000622668 PDE6BP35913 854 aa10.95□□□□□ -0.66
HDAC9-229ENST00000622668 MAP3K12Q12852 859 aa10.95□□□□□ -0.66
HDAC9-229ENST00000622668 MVPQ14764 893 aaKnown RBP10.95□□□□□ -0.66
HDAC9-229ENST00000622668 ALDH1L2Q3SY69 923 aa10.95□□□□□ -0.66
HDAC9-229ENST00000622668 LINS1Q8NG48 757 aa10.95□□□□□ -0.66
HDAC9-229ENST00000622668 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.95□□□□□ -0.66
HDAC9-229ENST00000622668 ZBTB1Q9Y2K1 713 aa10.95□□□□□ -0.66
HDAC9-229ENST00000622668 MINDY4BA8MYZ0 360 aa10.95□□□□□ -0.66
HDAC9-229ENST00000622668 KIF1BO60333 1816 aa10.95□□□□□ -0.66
HDAC9-229ENST00000622668 KCNQ3O43525 872 aa10.95□□□□□ -0.66
HDAC9-229ENST00000622668 LDHCP07864 332 aa10.95□□□□□ -0.66
HDAC9-229ENST00000622668 RARSP54136 660 aaKnown RBP10.95□□□□□ -0.66
HDAC9-229ENST00000622668 RPAP2Q8IXW5 612 aaPredicted RBP10.95□□□□□ -0.66
HDAC9-229ENST00000622668 PIGBQ92521 554 aa10.95□□□□□ -0.66
HDAC9-229ENST00000622668 FOXD4L1Q9NU39 408 aa10.95□□□□□ -0.66
HDAC9-229ENST00000622668 KIF1BPQ96EK5 621 aa10.95□□□□□ -0.66
HDAC9-229ENST00000622668 MYOM2P54296 1465 aa10.94□□□□□ -0.66
HDAC9-229ENST00000622668 PPIP5K2O43314 1243 aa10.94□□□□□ -0.66
HDAC9-229ENST00000622668 SLC4A8Q2Y0W8 1093 aa10.94□□□□□ -0.66
HDAC9-229ENST00000622668 TSPYL6Q8N831 410 aa10.94□□□□□ -0.66
HDAC9-229ENST00000622668 CCDC43Q96MW1 224 aaKnown RBP10.94□□□□□ -0.66
HDAC9-229ENST00000622668 SBNO2Q9Y2G9 1366 aa10.94□□□□□ -0.66
HDAC9-229ENST00000622668 NIM1KQ8IY84 436 aa10.94□□□□□ -0.66
HDAC9-229ENST00000622668 IL17REQ8NFR9 667 aa10.94□□□□□ -0.66
HDAC9-229ENST00000622668 PTPRCP08575 1304 aa10.94□□□□□ -0.66
HDAC9-229ENST00000622668 TRIM29Q14134 588 aa10.94□□□□□ -0.66
HDAC9-229ENST00000622668 NBR1Q14596 966 aa10.94□□□□□ -0.66
HDAC9-229ENST00000622668 MKNK2Q9HBH9 465 aa10.94□□□□□ -0.66
HDAC9-229ENST00000622668 RNF17Q9BXT8 1623 aaKnown RBP10.94□□□□□ -0.66
HDAC9-229ENST00000622668 PALLDQ8WX93 1383 aa10.94□□□□□ -0.66
HDAC9-229ENST00000622668 ST18O60284 1047 aa10.93□□□□□ -0.66
HDAC9-229ENST00000622668 ALDH1B1P30837 517 aa10.93□□□□□ -0.66
HDAC9-229ENST00000622668 MCTP1Q6DN14 999 aa10.93□□□□□ -0.66
HDAC9-229ENST00000622668 ZNF804AQ7Z570 1209 aa10.93□□□□□ -0.66
HDAC9-229ENST00000622668 PLCB2Q00722 1185 aa10.93□□□□□ -0.66
HDAC9-229ENST00000622668 ATP2B3Q16720 1220 aa10.93□□□□□ -0.66
HDAC9-229ENST00000622668 KIDINS220Q9ULH0 1771 aa10.93□□□□□ -0.66
HDAC9-229ENST00000622668 H3BQV1 296 aa10.93□□□□□ -0.66
HDAC9-229ENST00000622668 IFFO2Q5TF58 517 aa10.93□□□□□ -0.66
HDAC9-229ENST00000622668 SYNMO15061 1565 aa10.93□□□□□ -0.66
HDAC9-229ENST00000622668 SF3A1Q15459 793 aaKnown RBP10.92□□□□□ -0.66
HDAC9-229ENST00000622668 CNKSR1Q969H4 720 aa10.92□□□□□ -0.66
HDAC9-229ENST00000622668 CEP152O94986 1710 aa10.92□□□□□ -0.66
HDAC9-229ENST00000622668 ADAMTS13Q76LX8 1427 aa10.92□□□□□ -0.66
HDAC9-229ENST00000622668 ALKQ9UM73 1620 aa10.92□□□□□ -0.66
HDAC9-229ENST00000622668 BAG3O95817 575 aa10.92□□□□□ -0.66
HDAC9-229ENST00000622668 SERPINB2P05120 415 aa10.92□□□□□ -0.66
HDAC9-229ENST00000622668 PLBD2Q8NHP8 589 aa10.92□□□□□ -0.66
HDAC9-229ENST00000622668 SOS2Q07890 1332 aaPredicted RBP10.92□□□□□ -0.66
HDAC9-229ENST00000622668 INTS3Q68E01 1043 aaKnown RBP10.92□□□□□ -0.66
HDAC9-229ENST00000622668 SRP68Q9UHB9 627 aaKnown RBP10.92□□□□□ -0.66
HDAC9-229ENST00000622668 PRKG1Q13976 671 aa10.91□□□□□ -0.66
HDAC9-229ENST00000622668 ERICH6BQ5W0A0 696 aa10.91□□□□□ -0.66
HDAC9-229ENST00000622668 GCC1Q96CN9 775 aa10.91□□□□□ -0.66
HDAC9-229ENST00000622668 GGA1Q9UJY5 639 aa10.91□□□□□ -0.66
HDAC9-229ENST00000622668 CYP27B1O15528 508 aa10.91□□□□□ -0.66
HDAC9-229ENST00000622668 CHMP4BP1P59074 171 aa10.91□□□□□ -0.66
HDAC9-229ENST00000622668 SPTY2D1Q68D10 685 aaPredicted RBP10.91□□□□□ -0.66
HDAC9-229ENST00000622668 MPNDQ8N594 471 aa10.91□□□□□ -0.66
HDAC9-229ENST00000622668 IL16Q14005 1332 aa10.91□□□□□ -0.66
HDAC9-229ENST00000622668 HIP1O00291 1037 aa10.91□□□□□ -0.66
HDAC9-229ENST00000622668 FOSBP53539 338 aa10.91□□□□□ -0.66
HDAC9-229ENST00000622668 FOXD4L5Q5VV16 416 aaPredicted RBP10.91□□□□□ -0.66
HDAC9-229ENST00000622668 FOXD4L4Q8WXT5 416 aaPredicted RBP10.91□□□□□ -0.66
HDAC9-229ENST00000622668 ALDH1L1O75891 902 aa10.9□□□□□ -0.66
HDAC9-229ENST00000622668 TRIM27P14373 513 aa10.9□□□□□ -0.66
HDAC9-229ENST00000622668 NKTRP30414 1462 aaKnown RBP10.9□□□□□ -0.66
HDAC9-229ENST00000622668 PICALMQ13492 652 aa10.9□□□□□ -0.66
HDAC9-229ENST00000622668 TTLL7Q6ZT98 887 aa10.9□□□□□ -0.66
HDAC9-229ENST00000622668 ANKRD2Q9GZV1 360 aa10.9□□□□□ -0.66
HDAC9-229ENST00000622668 AATKQ6ZMQ8 1374 aa10.9□□□□□ -0.66
HDAC9-229ENST00000622668 AAMPQ13685 434 aa10.9□□□□□ -0.66
HDAC9-229ENST00000622668 H7C1D1 291 aa10.89□□□□□ -0.67
HDAC9-229ENST00000622668 SMARCA5O60264 1052 aaPredicted RBP10.89□□□□□ -0.67
HDAC9-229ENST00000622668 EZH2Q15910 746 aaKnown RBP10.89□□□□□ -0.67
HDAC9-229ENST00000622668 NUP133Q8WUM0 1156 aa10.89□□□□□ -0.67
HDAC9-229ENST00000622668 INO80Q9ULG1 1556 aaPredicted RBP10.89□□□□□ -0.67
HDAC9-229ENST00000622668 HLA-DOAP06340 250 aa10.89□□□□□ -0.67
HDAC9-229ENST00000622668 SUPT20HQ8NEM7 779 aa10.89□□□□□ -0.67
HDAC9-229ENST00000622668 MEIS3Q99687 375 aa10.89□□□□□ -0.67
HDAC9-229ENST00000622668 ZNF287Q9HBT7 754 aa10.89□□□□□ -0.67
HDAC9-229ENST00000622668 CABP5Q9NP86 173 aa10.89□□□□□ -0.67
HDAC9-229ENST00000622668 ZMYM4Q5VZL5 1548 aa10.89□□□□□ -0.67
HDAC9-229ENST00000622668 EIF4A1P60842 406 aaKnown RBP10.89□□□□□ -0.67
HDAC9-229ENST00000622668 UBAC1Q9BSL1 405 aa10.89□□□□□ -0.67
HDAC9-229ENST00000622668 NAPBQ9H115 298 aa10.89□□□□□ -0.67
HDAC9-229ENST00000622668 SPATA31A1Q5TZJ5 1347 aa10.89□□□□□ -0.67
HDAC9-229ENST00000622668 FER1L4A9Z1Z3 1794 aa10.89□□□□□ -0.67
HDAC9-229ENST00000622668 GOLIM4O00461 696 aa10.89□□□□□ -0.67
HDAC9-229ENST00000622668 FOXD4L6Q3SYB3 417 aaPredicted RBP10.89□□□□□ -0.67
HDAC9-229ENST00000622668 FOXD4L3Q6VB84 417 aaPredicted RBP10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms