RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 RBM27Q9P2N5 1060 aaKnown RBP17.5■□□□□ 0.39
SHROOM1-208ENST00000617339 TCEANC2Q96MN5 208 aa17.49■□□□□ 0.39
SHROOM1-208ENST00000617339 ANKARQ7Z5J8 1434 aa17.49■□□□□ 0.39
SHROOM1-208ENST00000617339 A1BGP04217 495 aa17.49■□□□□ 0.39
SHROOM1-208ENST00000617339 NPHP3Q7Z494 1330 aa17.49■□□□□ 0.39
SHROOM1-208ENST00000617339 KSR2Q6VAB6 950 aa17.49■□□□□ 0.39
SHROOM1-208ENST00000617339 AK9Q5TCS8 1911 aa17.49■□□□□ 0.39
SHROOM1-208ENST00000617339 PXDNQ92626 1479 aa17.48■□□□□ 0.39
SHROOM1-208ENST00000617339 AEBP2Q6ZN18 517 aaPredicted RBP17.48■□□□□ 0.39
SHROOM1-208ENST00000617339 IFNL2Q8IZJ0 200 aa17.48■□□□□ 0.39
SHROOM1-208ENST00000617339 PRDM4Q9UKN5 801 aa17.48■□□□□ 0.39
SHROOM1-208ENST00000617339 BAG4O95429 457 aaKnown RBP17.48■□□□□ 0.39
SHROOM1-208ENST00000617339 DDX58O95786 925 aaKnown RBP17.48■□□□□ 0.39
SHROOM1-208ENST00000617339 CHMLP26374 656 aa17.48■□□□□ 0.39
SHROOM1-208ENST00000617339 RNF214Q8ND24 703 aa17.48■□□□□ 0.39
SHROOM1-208ENST00000617339 DDIT3P35638 169 aa17.48■□□□□ 0.39
SHROOM1-208ENST00000617339 NEUROD6Q96NK8 337 aa17.48■□□□□ 0.39
SHROOM1-208ENST00000617339 PPP1R9BQ96SB3 815 aa17.48■□□□□ 0.39
SHROOM1-208ENST00000617339 ESYT1Q9BSJ8 1104 aa17.48■□□□□ 0.39
SHROOM1-208ENST00000617339 DIAPH3Q9NSV4 1193 aa17.48■□□□□ 0.39
SHROOM1-208ENST00000617339 RABEP1Q15276 862 aa17.47■□□□□ 0.39
SHROOM1-208ENST00000617339 PPFIA3O75145 1194 aa17.47■□□□□ 0.39
SHROOM1-208ENST00000617339 CHGBP05060 677 aa17.47■□□□□ 0.39
SHROOM1-208ENST00000617339 PHKG2P15735 406 aa17.47■□□□□ 0.39
SHROOM1-208ENST00000617339 TLR7Q9NYK1 1049 aaKnown RBP17.47■□□□□ 0.39
SHROOM1-208ENST00000617339 KIF1BPQ96EK5 621 aa17.47■□□□□ 0.39
SHROOM1-208ENST00000617339 RBSNQ9H1K0 784 aa17.47■□□□□ 0.39
SHROOM1-208ENST00000617339 GDPD2Q9HCC8 539 aa17.47■□□□□ 0.39
SHROOM1-208ENST00000617339 CIZ1Q9ULV3 898 aaPredicted RBP17.47■□□□□ 0.39
SHROOM1-208ENST00000617339 DNTTIP2Q5QJE6 756 aaKnown RBP17.46■□□□□ 0.39
SHROOM1-208ENST00000617339 DNAJC2Q99543 621 aaKnown RBP17.46■□□□□ 0.39
SHROOM1-208ENST00000617339 SLC52A2Q9HAB3 445 aa17.46■□□□□ 0.39
SHROOM1-208ENST00000617339 ANKRD13DQ6ZTN6 518 aa17.46■□□□□ 0.39
SHROOM1-208ENST00000617339 GRM8O00222 908 aa17.46■□□□□ 0.38
SHROOM1-208ENST00000617339 TAF7LQ5H9L4 462 aa17.46■□□□□ 0.38
SHROOM1-208ENST00000617339 EPHA10Q5JZY3 1008 aa17.46■□□□□ 0.38
SHROOM1-208ENST00000617339 SNX21Q969T3 373 aa17.46■□□□□ 0.38
SHROOM1-208ENST00000617339 NAP1L2Q9ULW6 460 aaPredicted RBP17.46■□□□□ 0.38
SHROOM1-208ENST00000617339 A0A087WZG4 1122 aa17.45■□□□□ 0.38
SHROOM1-208ENST00000617339 SLAIN2Q9P270 581 aa17.45■□□□□ 0.38
SHROOM1-208ENST00000617339 PTMAP06454 111 aaKnown RBP17.45■□□□□ 0.38
SHROOM1-208ENST00000617339 MCCP23508 829 aa17.45■□□□□ 0.38
SHROOM1-208ENST00000617339 SSH3Q8TE77 659 aa17.45■□□□□ 0.38
SHROOM1-208ENST00000617339 PRPF40AO75400 957 aaKnown RBP17.45■□□□□ 0.38
SHROOM1-208ENST00000617339 LARP1Q6PKG0 1096 aaKnown RBP17.45■□□□□ 0.38
SHROOM1-208ENST00000617339 TSC1Q92574 1164 aa17.45■□□□□ 0.38
SHROOM1-208ENST00000617339 ADCY9O60503 1353 aa17.44■□□□□ 0.38
SHROOM1-208ENST00000617339 PRIM1P49642 420 aaKnown RBP17.44■□□□□ 0.38
SHROOM1-208ENST00000617339 KNDC1Q76NI1 1749 aa17.44■□□□□ 0.38
SHROOM1-208ENST00000617339 ZSCAN23Q3MJ62 389 aa17.44■□□□□ 0.38
SHROOM1-208ENST00000617339 KLHL40Q2TBA0 621 aa17.43■□□□□ 0.38
SHROOM1-208ENST00000617339 TTLL7Q6ZT98 887 aa17.43■□□□□ 0.38
SHROOM1-208ENST00000617339 HYPKQ9NX55 129 aa17.43■□□□□ 0.38
SHROOM1-208ENST00000617339 NRKQ7Z2Y5 1582 aa17.43■□□□□ 0.38
SHROOM1-208ENST00000617339 C1orf167Q5SNV9 1468 aa17.43■□□□□ 0.38
SHROOM1-208ENST00000617339 IGKV5-2P06315 115 aa17.43■□□□□ 0.38
SHROOM1-208ENST00000617339 BRINP3Q76B58 766 aa17.43■□□□□ 0.38
SHROOM1-208ENST00000617339 DDX21Q9NR30 783 aaKnown RBP eCLIP17.43■□□□□ 0.38
SHROOM1-208ENST00000617339 IBTKQ9P2D0 1353 aaPredicted RBP17.43■□□□□ 0.38
SHROOM1-208ENST00000617339 SLFNL1Q499Z3 407 aa17.42■□□□□ 0.38
SHROOM1-208ENST00000617339 PTMSP20962 102 aa17.42■□□□□ 0.38
SHROOM1-208ENST00000617339 PRPF40BQ6NWY9 871 aaKnown RBP17.42■□□□□ 0.38
SHROOM1-208ENST00000617339 CNTROBQ8N137 903 aa17.41■□□□□ 0.38
SHROOM1-208ENST00000617339 EAF2Q96CJ1 260 aaPredicted RBP17.41■□□□□ 0.38
SHROOM1-208ENST00000617339 ZNF594Q96JF6 807 aaPredicted RBP17.41■□□□□ 0.38
SHROOM1-208ENST00000617339 TMX3Q96JJ7 454 aa17.41■□□□□ 0.38
SHROOM1-208ENST00000617339 FAM227BQ96M60 508 aa17.41■□□□□ 0.38
SHROOM1-208ENST00000617339 FSD1Q9BTV5 496 aa17.41■□□□□ 0.38
SHROOM1-208ENST00000617339 GPTP24298 496 aa17.41■□□□□ 0.38
SHROOM1-208ENST00000617339 GORABQ5T7V8 394 aa17.41■□□□□ 0.38
SHROOM1-208ENST00000617339 ZCRB1Q8TBF4 217 aaKnown RBP17.41■□□□□ 0.38
SHROOM1-208ENST00000617339 CEMIPQ8WUJ3 1361 aa17.41■□□□□ 0.38
SHROOM1-208ENST00000617339 SNRPA1P09661 255 aaKnown RBP17.4■□□□□ 0.38
SHROOM1-208ENST00000617339 LINS1Q8NG48 757 aa17.4■□□□□ 0.38
SHROOM1-208ENST00000617339 NCOA3Q9Y6Q9 1424 aa17.4■□□□□ 0.38
SHROOM1-208ENST00000617339 FMNL2Q96PY5 1086 aa17.4■□□□□ 0.38
SHROOM1-208ENST00000617339 RASEFQ8IZ41 740 aa17.4■□□□□ 0.38
SHROOM1-208ENST00000617339 GOLGB1Q14789 3259 aaKnown RBP17.39■□□□□ 0.37
SHROOM1-208ENST00000617339 SYCE3A1L190 88 aa17.39■□□□□ 0.37
SHROOM1-208ENST00000617339 FOSBP53539 338 aa17.39■□□□□ 0.37
SHROOM1-208ENST00000617339 MEX3CQ5U5Q3 659 aaKnown RBP17.39■□□□□ 0.37
SHROOM1-208ENST00000617339 ACSBG1Q96GR2 724 aa17.39■□□□□ 0.37
SHROOM1-208ENST00000617339 KIF24Q5T7B8 1368 aa17.39■□□□□ 0.37
SHROOM1-208ENST00000617339 GTF2E1P29083 439 aaPredicted RBP17.39■□□□□ 0.37
SHROOM1-208ENST00000617339 PDIA6Q15084 440 aa17.39■□□□□ 0.37
SHROOM1-208ENST00000617339 LMBR1LQ6UX01 489 aa17.39■□□□□ 0.37
SHROOM1-208ENST00000617339 STK3Q13188 491 aa17.39■□□□□ 0.37
SHROOM1-208ENST00000617339 BTG4Q9NY30 223 aa17.39■□□□□ 0.37
SHROOM1-208ENST00000617339 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.38■□□□□ 0.37
SHROOM1-208ENST00000617339 KAZALD1Q96I82 304 aa17.38■□□□□ 0.37
SHROOM1-208ENST00000617339 MAP7D2Q96T17 732 aa17.38■□□□□ 0.37
SHROOM1-208ENST00000617339 CHMP4AQ9BY43 222 aa17.38■□□□□ 0.37
SHROOM1-208ENST00000617339 EIF2AK3Q9NZJ5 1116 aaKnown RBP17.38■□□□□ 0.37
SHROOM1-208ENST00000617339 NOL7Q9UMY1 257 aaKnown RBP17.38■□□□□ 0.37
SHROOM1-208ENST00000617339 CASTP20810 708 aaKnown RBP17.38■□□□□ 0.37
SHROOM1-208ENST00000617339 PTH1RQ03431 593 aa17.38■□□□□ 0.37
SHROOM1-208ENST00000617339 SASH1O94885 1247 aa17.38■□□□□ 0.37
SHROOM1-208ENST00000617339 TIMM10P62072 90 aa17.38■□□□□ 0.37
SHROOM1-208ENST00000617339 FGD1P98174 961 aa17.38■□□□□ 0.37
SHROOM1-208ENST00000617339 SNRKQ9NRH2 765 aa17.38■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 89.3 ms