RNA–Protein interactions for RNA: ENST00000607020.5

SSBP4-214, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 3

Gene SSBP4, Length 504 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-214ENST00000607020 NPM2Q86SE8 214 aaKnown RBP20.24■□□□□ 0.83
SSBP4-214ENST00000607020 TMEM88BA6NKF7 163 aa20.23■□□□□ 0.83
SSBP4-214ENST00000607020 CTCFP49711 727 aaPredicted RBP20.23■□□□□ 0.83
SSBP4-214ENST00000607020 TIAM2Q8IVF5 1701 aa20.23■□□□□ 0.83
SSBP4-214ENST00000607020 RGL2O15211 777 aa20.22■□□□□ 0.83
SSBP4-214ENST00000607020 VEGFBP49765 207 aa20.22■□□□□ 0.83
SSBP4-214ENST00000607020 CCDC93Q567U6 631 aa20.22■□□□□ 0.83
SSBP4-214ENST00000607020 WBP1LQ9NX94 342 aa20.22■□□□□ 0.83
SSBP4-214ENST00000607020 ZNF330Q9Y3S2 320 aaPredicted RBP20.22■□□□□ 0.83
SSBP4-214ENST00000607020 NPHP1O15259 732 aa20.21■□□□□ 0.83
SSBP4-214ENST00000607020 FKBP4Q02790 459 aaKnown RBP eCLIP20.21■□□□□ 0.83
SSBP4-214ENST00000607020 DZIP3Q86Y13 1208 aaKnown RBP20.21■□□□□ 0.83
SSBP4-214ENST00000607020 CEMIPQ8WUJ3 1361 aa20.21■□□□□ 0.83
SSBP4-214ENST00000607020 NPR1P16066 1061 aa20.2■□□□□ 0.82
SSBP4-214ENST00000607020 AIDAQ96BJ3 306 aa20.2■□□□□ 0.82
SSBP4-214ENST00000607020 UBR2Q8IWV8 1755 aa20.19■□□□□ 0.82
SSBP4-214ENST00000607020 RTKN2Q8IZC4 609 aa20.19■□□□□ 0.82
SSBP4-214ENST00000607020 FER1L6Q2WGJ9 1857 aa20.19■□□□□ 0.82
SSBP4-214ENST00000607020 NBPF5PQ86XG9 351 aaPredicted RBP20.18■□□□□ 0.82
SSBP4-214ENST00000607020 HACL1Q9UJ83 578 aa20.18■□□□□ 0.82
SSBP4-214ENST00000607020 USP16Q9Y5T5 823 aa20.18■□□□□ 0.82
SSBP4-214ENST00000607020 ANKRD31Q8N7Z5 1873 aa20.18■□□□□ 0.82
SSBP4-214ENST00000607020 RASSF10A6NK89 507 aa20.17■□□□□ 0.82
SSBP4-214ENST00000607020 KCNQ3O43525 872 aa20.17■□□□□ 0.82
SSBP4-214ENST00000607020 TPTE2Q6XPS3 522 aa20.17■□□□□ 0.82
SSBP4-214ENST00000607020 PNMA8AQ86V59 439 aaPredicted RBP20.17■□□□□ 0.82
SSBP4-214ENST00000607020 BTBD11A6QL63 1104 aa20.16■□□□□ 0.82
SSBP4-214ENST00000607020 FZD9O00144 591 aa20.16■□□□□ 0.82
SSBP4-214ENST00000607020 EPHX2P34913 555 aa20.16■□□□□ 0.82
SSBP4-214ENST00000607020 ZNF277Q9NRM2 450 aaPredicted RBP20.16■□□□□ 0.82
SSBP4-214ENST00000607020 ZNF652Q9Y2D9 606 aa20.16■□□□□ 0.82
SSBP4-214ENST00000607020 KIF7Q2M1P5 1343 aa20.16■□□□□ 0.82
SSBP4-214ENST00000607020 ZNF541Q9H0D2 1346 aa20.15■□□□□ 0.82
SSBP4-214ENST00000607020 SCN7AQ01118 1682 aa20.15■□□□□ 0.82
SSBP4-214ENST00000607020 DICER1Q9UPY3 1922 aaKnown RBP20.15■□□□□ 0.82
SSBP4-214ENST00000607020 NPC1L1Q9UHC9 1359 aa20.14■□□□□ 0.81
SSBP4-214ENST00000607020 U2SURPO15042 1029 aaKnown RBP20.14■□□□□ 0.81
SSBP4-214ENST00000607020 LBX1P52954 281 aa20.14■□□□□ 0.81
SSBP4-214ENST00000607020 DEFB115Q30KQ5 88 aa20.14■□□□□ 0.81
SSBP4-214ENST00000607020 EAPPQ56P03 285 aaPredicted RBP20.14■□□□□ 0.81
SSBP4-214ENST00000607020 CC2D1BQ5T0F9 858 aaKnown RBP20.14■□□□□ 0.81
SSBP4-214ENST00000607020 CNTROBQ8N137 903 aa20.14■□□□□ 0.81
SSBP4-214ENST00000607020 CCDC88AQ3V6T2 1871 aa20.13■□□□□ 0.81
SSBP4-214ENST00000607020 SLX4Q8IY92 1834 aa20.13■□□□□ 0.81
SSBP4-214ENST00000607020 COL11A2P13942 1736 aaPredicted RBP20.13■□□□□ 0.81
SSBP4-214ENST00000607020 SNRPA1P09661 255 aaKnown RBP20.13■□□□□ 0.81
SSBP4-214ENST00000607020 ALDH1B1P30837 517 aa20.13■□□□□ 0.81
SSBP4-214ENST00000607020 GPC2Q8N158 579 aa20.13■□□□□ 0.81
SSBP4-214ENST00000607020 CLEC11AQ9Y240 323 aa20.13■□□□□ 0.81
SSBP4-214ENST00000607020 COL3A1P02461 1466 aaPredicted RBP20.12■□□□□ 0.81
SSBP4-214ENST00000607020 IARSP41252 1262 aaKnown RBP20.12■□□□□ 0.81
SSBP4-214ENST00000607020 MAP2K1Q02750 393 aaPredicted RBP20.12■□□□□ 0.81
SSBP4-214ENST00000607020 SYNE4Q8N205 404 aa20.12■□□□□ 0.81
SSBP4-214ENST00000607020 PHACTR3Q96KR7 559 aa20.12■□□□□ 0.81
SSBP4-214ENST00000607020 HSPA8P11142 646 aaKnown RBP20.11■□□□□ 0.81
SSBP4-214ENST00000607020 PSMD1Q99460 953 aa20.11■□□□□ 0.81
SSBP4-214ENST00000607020 PIP4K2AP48426 406 aaPredicted RBP20.1■□□□□ 0.81
SSBP4-214ENST00000607020 MAP1SQ66K74 1059 aaPredicted RBP20.1■□□□□ 0.81
SSBP4-214ENST00000607020 OLFM4Q6UX06 510 aa20.1■□□□□ 0.81
SSBP4-214ENST00000607020 NIP7Q9Y221 180 aaKnown RBP eCLIP20.1■□□□□ 0.81
SSBP4-214ENST00000607020 SCN4AP35499 1836 aa20.09■□□□□ 0.81
SSBP4-214ENST00000607020 WDR33Q9C0J8 1336 aaKnown RBP20.09■□□□□ 0.81
SSBP4-214ENST00000607020 PRAMEF22A3QJZ6 481 aa20.09■□□□□ 0.81
SSBP4-214ENST00000607020 NBPF26B4DH59 902 aa20.09■□□□□ 0.81
SSBP4-214ENST00000607020 CC2D2BQ6DHV5 1058 aa20.09■□□□□ 0.81
SSBP4-214ENST00000607020 NBPF10Q6P3W6 841 aaKnown RBP20.09■□□□□ 0.81
SSBP4-214ENST00000607020 NBPF15Q8N660 670 aa20.09■□□□□ 0.81
SSBP4-214ENST00000607020 RSPH6AQ9H0K4 717 aa20.09■□□□□ 0.81
SSBP4-214ENST00000607020 RNF123Q5XPI4 1314 aa20.08■□□□□ 0.81
SSBP4-214ENST00000607020 SLC34A2O95436 690 aa20.08■□□□□ 0.81
SSBP4-214ENST00000607020 CRY2Q49AN0 593 aa20.08■□□□□ 0.81
SSBP4-214ENST00000607020 ABHD8Q96I13 439 aa20.08■□□□□ 0.81
SSBP4-214ENST00000607020 PRKAR2BP31323 418 aa20.07■□□□□ 0.8
SSBP4-214ENST00000607020 GRIPAP1Q4V328 841 aa20.07■□□□□ 0.8
SSBP4-214ENST00000607020 JDP2Q8WYK2 163 aa20.07■□□□□ 0.8
SSBP4-214ENST00000607020 DDX21Q9NR30 783 aaKnown RBP eCLIP20.07■□□□□ 0.8
SSBP4-214ENST00000607020 SNED1Q8TER0 1413 aa20.07■□□□□ 0.8
SSBP4-214ENST00000607020 HTATSF1O43719 755 aaKnown RBP20.05■□□□□ 0.8
SSBP4-214ENST00000607020 HLFQ16534 295 aa20.05■□□□□ 0.8
SSBP4-214ENST00000607020 ADAMTSL1Q8N6G6 1762 aa20.05■□□□□ 0.8
SSBP4-214ENST00000607020 ARFGEF2Q9Y6D5 1785 aa20.04■□□□□ 0.8
SSBP4-214ENST00000607020 HOXA10P31260 410 aaPredicted RBP20.04■□□□□ 0.8
SSBP4-214ENST00000607020 EIF6P56537 245 aaKnown RBP20.04■□□□□ 0.8
SSBP4-214ENST00000607020 RTF1Q92541 710 aaKnown RBP20.04■□□□□ 0.8
SSBP4-214ENST00000607020 ABT1Q9ULW3 272 aaKnown RBP20.04■□□□□ 0.8
SSBP4-214ENST00000607020 SIPA1L3O60292 1781 aaPredicted RBP20.03■□□□□ 0.8
SSBP4-214ENST00000607020 ERVV-1B6SEH8 477 aa20.03■□□□□ 0.8
SSBP4-214ENST00000607020 GTF2E1P29083 439 aaPredicted RBP20.03■□□□□ 0.8
SSBP4-214ENST00000607020 CCER1Q8TC90 406 aaPredicted RBP20.03■□□□□ 0.8
SSBP4-214ENST00000607020 NYXQ9GZU5 481 aa20.03■□□□□ 0.8
SSBP4-214ENST00000607020 FAM177BA6PVY3 158 aa20.02■□□□□ 0.8
SSBP4-214ENST00000607020 ECE1P42892 770 aa20.02■□□□□ 0.8
SSBP4-214ENST00000607020 RGS19P49795 217 aa20.02■□□□□ 0.8
SSBP4-214ENST00000607020 USP50Q70EL3 339 aaPredicted RBP20.02■□□□□ 0.8
SSBP4-214ENST00000607020 MCM10Q7L590 875 aa20.02■□□□□ 0.8
SSBP4-214ENST00000607020 CFAP53Q96M91 514 aa20.02■□□□□ 0.8
SSBP4-214ENST00000607020 NUDCQ9Y266 331 aa20.02■□□□□ 0.8
SSBP4-214ENST00000607020 BCORQ6W2J9 1755 aa20.01■□□□□ 0.79
SSBP4-214ENST00000607020 LMOD1P29536 600 aaPredicted RBP20.01■□□□□ 0.79
SSBP4-214ENST00000607020 SCNN1DP51172 638 aa20.01■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms