RNA–Protein interactions for RNA: ENST00000598201.5

SHKBP1-216, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,069 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-216ENST00000598201 POLA2Q14181 598 aa21.11■□□□□ 0.97
SHKBP1-216ENST00000598201 COPS6Q7L5N1 327 aa21.1■□□□□ 0.97
SHKBP1-216ENST00000598201 LRRCC1Q9C099 1032 aa21.1■□□□□ 0.97
SHKBP1-216ENST00000598201 BRWD3Q6RI45 1802 aa21.1■□□□□ 0.97
SHKBP1-216ENST00000598201 LINS1Q8NG48 757 aa21.09■□□□□ 0.97
SHKBP1-216ENST00000598201 FAM182BQ5T319 152 aa21.09■□□□□ 0.97
SHKBP1-216ENST00000598201 SRGAP3O43295 1099 aa21.08■□□□□ 0.97
SHKBP1-216ENST00000598201 PRKCSHP14314 528 aaPredicted RBP21.08■□□□□ 0.97
SHKBP1-216ENST00000598201 RIC3Q7Z5B4 369 aa21.08■□□□□ 0.97
SHKBP1-216ENST00000598201 C9orf78Q9NZ63 289 aaPredicted RBP21.08■□□□□ 0.97
SHKBP1-216ENST00000598201 DAXXQ9UER7 740 aaPredicted RBP21.08■□□□□ 0.97
SHKBP1-216ENST00000598201 IGKV5-2P06315 115 aa21.08■□□□□ 0.96
SHKBP1-216ENST00000598201 SALL3Q9BXA9 1300 aa21.07■□□□□ 0.96
SHKBP1-216ENST00000598201 CDC45O75419 566 aa21.07■□□□□ 0.96
SHKBP1-216ENST00000598201 PDE1AP54750 535 aa21.06■□□□□ 0.96
SHKBP1-216ENST00000598201 KCPQ6ZWJ8 1503 aa21.06■□□□□ 0.96
SHKBP1-216ENST00000598201 OSBPL3Q9H4L5 887 aa21.06■□□□□ 0.96
SHKBP1-216ENST00000598201 TOGARAM1Q9Y4F4 1720 aa21.06■□□□□ 0.96
SHKBP1-216ENST00000598201 UBR2Q8IWV8 1755 aa21.05■□□□□ 0.96
SHKBP1-216ENST00000598201 SURF6O75683 361 aaKnown RBP21.05■□□□□ 0.96
SHKBP1-216ENST00000598201 SDSP20132 328 aa21.05■□□□□ 0.96
SHKBP1-216ENST00000598201 GRM8O00222 908 aa21.05■□□□□ 0.96
SHKBP1-216ENST00000598201 TSHZ3Q63HK5 1081 aa21.05■□□□□ 0.96
SHKBP1-216ENST00000598201 ANKRD13DQ6ZTN6 518 aa21.05■□□□□ 0.96
SHKBP1-216ENST00000598201 PAPPAQ13219 1627 aa21.04■□□□□ 0.96
SHKBP1-216ENST00000598201 UTYO14607 1347 aa21.04■□□□□ 0.96
SHKBP1-216ENST00000598201 LAMB4A4D0S4 1761 aa21.04■□□□□ 0.96
SHKBP1-216ENST00000598201 NBPF26B4DH59 902 aa21.04■□□□□ 0.96
SHKBP1-216ENST00000598201 PTCD1O75127 700 aaKnown RBP21.04■□□□□ 0.96
SHKBP1-216ENST00000598201 MTX1Q13505 466 aa21.04■□□□□ 0.96
SHKBP1-216ENST00000598201 NBPF14Q5TI25 921 aa21.04■□□□□ 0.96
SHKBP1-216ENST00000598201 NBPF10Q6P3W6 841 aaKnown RBP21.04■□□□□ 0.96
SHKBP1-216ENST00000598201 NBPF15Q8N660 670 aa21.04■□□□□ 0.96
SHKBP1-216ENST00000598201 KAZALD1Q96I82 304 aa21.04■□□□□ 0.96
SHKBP1-216ENST00000598201 METTL22Q9BUU2 404 aaPredicted RBP21.04■□□□□ 0.96
SHKBP1-216ENST00000598201 MYD88Q99836 296 aa21.03■□□□□ 0.96
SHKBP1-216ENST00000598201 NEURL1BA8MQ27 555 aa21.03■□□□□ 0.96
SHKBP1-216ENST00000598201 FAM196AQ6ZSG2 479 aa21.03■□□□□ 0.96
SHKBP1-216ENST00000598201 SUCLG2Q96I99 432 aa21.03■□□□□ 0.96
SHKBP1-216ENST00000598201 IL1RAPL2Q9NP60 686 aa21.03■□□□□ 0.96
SHKBP1-216ENST00000598201 RBM25P49756 843 aaKnown RBP21.02■□□□□ 0.96
SHKBP1-216ENST00000598201 RAB11FIP3O75154 756 aa21.01■□□□□ 0.95
SHKBP1-216ENST00000598201 EP400Q96L91 3159 aa21.01■□□□□ 0.95
SHKBP1-216ENST00000598201 MX1P20591 662 aa21.01■□□□□ 0.95
SHKBP1-216ENST00000598201 NEXNQ0ZGT2 675 aa21.01■□□□□ 0.95
SHKBP1-216ENST00000598201 RHPN1Q8TCX5 695 aa21.01■□□□□ 0.95
SHKBP1-216ENST00000598201 TMOD3Q9NYL9 352 aa21.01■□□□□ 0.95
SHKBP1-216ENST00000598201 GCKRQ14397 625 aa21■□□□□ 0.95
SHKBP1-216ENST00000598201 ILDR2Q71H61 639 aa21■□□□□ 0.95
SHKBP1-216ENST00000598201 A1BGP04217 495 aa21■□□□□ 0.95
SHKBP1-216ENST00000598201 BECN1Q14457 450 aa21■□□□□ 0.95
SHKBP1-216ENST00000598201 NBR1Q14596 966 aa21■□□□□ 0.95
SHKBP1-216ENST00000598201 TBC1D2Q9BYX2 928 aa21■□□□□ 0.95
SHKBP1-216ENST00000598201 BICC1Q9H694 974 aaKnown RBP21■□□□□ 0.95
SHKBP1-216ENST00000598201 BCL9O00512 1426 aa20.99■□□□□ 0.95
SHKBP1-216ENST00000598201 ERBB4Q15303 1308 aa20.99■□□□□ 0.95
SHKBP1-216ENST00000598201 PIGBQ92521 554 aa20.99■□□□□ 0.95
SHKBP1-216ENST00000598201 STAP2Q9UGK3 403 aa20.99■□□□□ 0.95
SHKBP1-216ENST00000598201 ACSBG1Q96GR2 724 aa20.98■□□□□ 0.95
SHKBP1-216ENST00000598201 ASAP1Q9ULH1 1129 aa20.98■□□□□ 0.95
SHKBP1-216ENST00000598201 HDAC5Q9UQL6 1122 aa20.98■□□□□ 0.95
SHKBP1-216ENST00000598201 NUTM1Q86Y26 1132 aa20.97■□□□□ 0.95
SHKBP1-216ENST00000598201 PLBD2Q8NHP8 589 aa20.97■□□□□ 0.95
SHKBP1-216ENST00000598201 KIF1BPQ96EK5 621 aa20.97■□□□□ 0.95
SHKBP1-216ENST00000598201 PA2G4Q9UQ80 394 aaKnown RBP20.97■□□□□ 0.95
SHKBP1-216ENST00000598201 TTLL7Q6ZT98 887 aa20.97■□□□□ 0.95
SHKBP1-216ENST00000598201 ARFGEF2Q9Y6D5 1785 aa20.97■□□□□ 0.95
SHKBP1-216ENST00000598201 ATP5J2-PTCD1G3V325 749 aa20.96■□□□□ 0.95
SHKBP1-216ENST00000598201 JARID2Q92833 1246 aaPredicted RBP20.96■□□□□ 0.95
SHKBP1-216ENST00000598201 SYTL4Q96C24 671 aaPredicted RBP20.96■□□□□ 0.95
SHKBP1-216ENST00000598201 KIF2CQ99661 725 aa20.96■□□□□ 0.95
SHKBP1-216ENST00000598201 KAT6BQ8WYB5 2073 aa20.96■□□□□ 0.95
SHKBP1-216ENST00000598201 PRIM1P49642 420 aaKnown RBP20.95■□□□□ 0.94
SHKBP1-216ENST00000598201 EPHA10Q5JZY3 1008 aa20.95■□□□□ 0.94
SHKBP1-216ENST00000598201 ATG3Q9NT62 314 aa20.95■□□□□ 0.94
SHKBP1-216ENST00000598201 KCNQ2O43526 872 aa20.95■□□□□ 0.94
SHKBP1-216ENST00000598201 HSP90AB4PQ58FF6 505 aa20.95■□□□□ 0.94
SHKBP1-216ENST00000598201 TUBGCP6Q96RT7 1819 aa20.94■□□□□ 0.94
SHKBP1-216ENST00000598201 TRIM37O94972 964 aa20.93■□□□□ 0.94
SHKBP1-216ENST00000598201 OS9Q13438 667 aaPredicted RBP20.93■□□□□ 0.94
SHKBP1-216ENST00000598201 ITGB4P16144 1822 aa20.93■□□□□ 0.94
SHKBP1-216ENST00000598201 AOX1Q06278 1338 aa20.93■□□□□ 0.94
SHKBP1-216ENST00000598201 DOT1LQ8TEK3 1739 aa20.92■□□□□ 0.94
SHKBP1-216ENST00000598201 PTF1AQ7RTS3 328 aa20.92■□□□□ 0.94
SHKBP1-216ENST00000598201 DNAJC10Q8IXB1 793 aa20.92■□□□□ 0.94
SHKBP1-216ENST00000598201 AFDNP55196 1824 aaKnown RBP20.91■□□□□ 0.94
SHKBP1-216ENST00000598201 SBF2Q86WG5 1849 aa20.91■□□□□ 0.94
SHKBP1-216ENST00000598201 CASC1Q6TDU7 716 aa20.91■□□□□ 0.94
SHKBP1-216ENST00000598201 UBE3BQ7Z3V4 1068 aa20.91■□□□□ 0.94
SHKBP1-216ENST00000598201 PI4K2BQ8TCG2 481 aa20.91■□□□□ 0.94
SHKBP1-216ENST00000598201 USP26Q9BXU7 913 aa20.91■□□□□ 0.94
SHKBP1-216ENST00000598201 BCL11BQ9C0K0 894 aaPredicted RBP20.91■□□□□ 0.94
SHKBP1-216ENST00000598201 A0A087WZG4 1122 aa20.9■□□□□ 0.94
SHKBP1-216ENST00000598201 TRIM6-TRIM34B2RNG4 842 aa20.9■□□□□ 0.94
SHKBP1-216ENST00000598201 CASP7P55210 303 aa20.9■□□□□ 0.94
SHKBP1-216ENST00000598201 ZBTB3Q9H5J0 574 aa20.9■□□□□ 0.94
SHKBP1-216ENST00000598201 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP20.9■□□□□ 0.94
SHKBP1-216ENST00000598201 NUP188Q5SRE5 1749 aa20.89■□□□□ 0.93
SHKBP1-216ENST00000598201 VSIG10Q8N0Z9 540 aa20.89■□□□□ 0.93
SHKBP1-216ENST00000598201 KLHDC4Q8TBB5 520 aa20.89■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms